BAC Information

Click to search

BAC

Clone NameB6Ng01-042O05
Chromosome7 (Build37)
Map Location 71,408,799 - 71,546,521
singlet/doubletdoublet
Overlap geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
Upstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneApba2, 5730507A09Rik, Ndnl2, Tjp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042O05.bB6Ng01-042O05.g
ACCDH869120DH869121
length931748
definitionDH869120|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O05, 5' end.DH869121|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,545,591 - 71,546,521)(71,408,799 - 71,409,381)
sequence
gaattccaggtacttggcagatcgtagacactcatgtatgaatatatcct
tgatttattctactctcttctgcatgaggactgaggcttttctgttaatt
ttctgattatgcctagccaatgaattgtcctatggaattactttaaacta
aagcctaagtggcattgctggtagtctaccagtcaaacatgaccatctac
agataaatgttccctgatgagaatgctcttatcaaacatttcttcacatt
ttcagtcgctcttagcaaaatgcagcttaggagacattacaattcagggc
ccggagagatggtgcagtgagttgatatgctggccaccagtcctgatgac
ctgagtttgatccccagaatacacacgatggaagcagactcgtgaaagct
gtcctctgacttctacatgcatggcatggtactgggagtaggggcattta
aaagaaaaatcagtaattaaaaatgatttggttttataataagcagcaag
tcattcgggtttttaaggctagaacagaattataagaacactttggctgg
gatgtagaccagtgtctagctcatgcttagcctgcctacatgaggccctc
agttcaatccctggcactgtaactcaaaccttggcaagttgatgaaattc
ttattttagaaattttcttcatgtgcctaattgcgtcatagtgacagtga
cttccttcatgtgcctaactgcctcatagtgacagtgactttcttcatgt
gcctaactgcctcatagtaacagtgaaaagcacttccattcctattacaa
gagaggccacatttaatccaaacagccactttggtggcctgttttaagtc
tattggatgtagttgtcctcaaaattcatccattattgttatagtttcct
aaaaggagaatgtgtgtgtgtgtgtgtgtgt
gaattcattgggaggcatcctgtgttctggaaccatctgtccaagaaaga
gacattgcaggctgaatttcaggcttctcttttttttttttttttttttt
aagatttatttattatatgtaagtacactgtagctgtcctcagacactcc
agaagagggagtcagatctcgttacggatggttgtgagccaccatgtggt
tgctgggatttgaactctggaccttcggaagagcagtcgggtgctcttac
ccactgagccatctcaccagcccgactttggactttgaaagtatgttgag
actgtagaagagtatgaagacttttaaaattgaactaaatttattttgca
ttatgcttatccataagcttatgactttggactttgaaagtatgttgaga
ctgtagaagagtatgaagacttttaaaattgaactaaatttattttgcat
tatgcttatccataagcttatgggttcagggagtgtgaagtgtgtgcttt
gaatgaaaatagcccccttagactcatttatttgaatacttggtccctag
ctggtagaagtgtttaggaaggattaggaggtgtggccttattggaggag
gtgtgtcactggggtggactatgaggttttaaaagcccatgtcattctca
gtgatctctctttctccaccacccacatccccttctgggatgtagatcaa
gatatgatctgtcactgttctttgctccatcatcatggtcccaacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71545591_71546521
seq2: B6Ng01-042O05.b_49_979 (reverse)

seq1  ACACACACACACACACACACATTCTCCTTTTAGGAAACTATAACAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATTCTCCTTTTAGGAAACTATAACAATAAT  50

seq1  GGATGAATTTTGAGGACAACTACATCCAATAGACTTAAAACAGGCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATTTTGAGGACAACTACATCCAATAGACTTAAAACAGGCCACCA  100

seq1  AAGTGGCTGTTTGGATTAAATGTGGCCTCTCTTGTAATAGGAATGGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTGTTTGGATTAAATGTGGCCTCTCTTGTAATAGGAATGGAAGT  150

seq1  GCTTTTCACTGTTACTATGAGGCAGTTAGGCACATGAAGAAAGTCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCACTGTTACTATGAGGCAGTTAGGCACATGAAGAAAGTCACTGT  200

seq1  CACTATGAGGCAGTTAGGCACATGAAGGAAGTCACTGTCACTATGACGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGAGGCAGTTAGGCACATGAAGGAAGTCACTGTCACTATGACGCA  250

seq1  ATTAGGCACATGAAGAAAATTTCTAAAATAAGAATTTCATCAACTTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCACATGAAGAAAATTTCTAAAATAAGAATTTCATCAACTTGCCA  300

seq1  AGGTTTGAGTTACAGTGCCAGGGATTGAACTGAGGGCCTCATGTAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGAGTTACAGTGCCAGGGATTGAACTGAGGGCCTCATGTAGGCAG  350

seq1  GCTAAGCATGAGCTAGACACTGGTCTACATCCCAGCCAAAGTGTTCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCATGAGCTAGACACTGGTCTACATCCCAGCCAAAGTGTTCTTAT  400

seq1  AATTCTGTTCTAGCCTTAAAAACCCGAATGACTTGCTGCTTATTATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTCTAGCCTTAAAAACCCGAATGACTTGCTGCTTATTATAAAA  450

seq1  CCAAATCATTTTTAATTACTGATTTTTCTTTTAAATGCCCCTACTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCATTTTTAATTACTGATTTTTCTTTTAAATGCCCCTACTCCCAG  500

seq1  TACCATGCCATGCATGTAGAAGTCAGAGGACAGCTTTCACGAGTCTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCCATGCATGTAGAAGTCAGAGGACAGCTTTCACGAGTCTGCTT  550

seq1  CCATCGTGTGTATTCTGGGGATCAAACTCAGGTCATCAGGACTGGTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGTGTGTATTCTGGGGATCAAACTCAGGTCATCAGGACTGGTGGCC  600

seq1  AGCATATCAACTCACTGCACCATCTCTCCGGGCCCTGAATTGTAATGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATCAACTCACTGCACCATCTCTCCGGGCCCTGAATTGTAATGTCT  650

seq1  CCTAAGCTGCATTTTGCTAAGAGCGACTGAAAATGTGAAGAAATGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTGCATTTTGCTAAGAGCGACTGAAAATGTGAAGAAATGTTTGA  700

seq1  TAAGAGCATTCTCATCAGGGAACATTTATCTGTAGATGGTCATGTTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCATTCTCATCAGGGAACATTTATCTGTAGATGGTCATGTTTGAC  750

seq1  TGGTAGACTACCAGCAATGCCACTTAGGCTTTAGTTTAAAGTAATTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACTACCAGCAATGCCACTTAGGCTTTAGTTTAAAGTAATTCCAT  800

seq1  AGGACAATTCATTGGCTAGGCATAATCAGAAAATTAACAGAAAAGCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAATTCATTGGCTAGGCATAATCAGAAAATTAACAGAAAAGCCTCA  850

seq1  GTCCTCATGCAGAAGAGAGTAGAATAAATCAAGGATATATTCATACATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATGCAGAAGAGAGTAGAATAAATCAAGGATATATTCATACATGA  900

seq1  GTGTCTACGATCTGCCAAGTACCTGGAATTC  931
      |||||||||||||||||||||||||||||||
seq2  GTGTCTACGATCTGCCAAGTACCTGGAATTC  931

seq1: chr7_71408799_71409381
seq2: B6Ng01-042O05.g_66_648

seq1  GAATTCATTGGGAGGCATCCTGTGTTCTGGAACCATCTGTCCAAGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGGAGGCATCCTGTGTTCTGGAACCATCTGTCCAAGAAAGA  50

seq1  GACATTGCAGGCTGAATTTCAGGCTTCTCTTTTTTTTTTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGCAGGCTGAATTTCAGGCTTCTCTTTTTTTTTTTTTTTTTTTTT  100

seq1  AAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAGACACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAGACACTCC  150

seq1  AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGT  200

seq1  TGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTAC  250

seq1  CCACTGAGCCATCTCACCAGCCCGACTTTGGACTTTGAAAGTATGTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCATCTCACCAGCCCGACTTTGGACTTTGAAAGTATGTTGAG  300

seq1  ACTGTAGAAGAGTATGAAGACTTTTAAAATTGAACTAAATTTATTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAAGAGTATGAAGACTTTTAAAATTGAACTAAATTTATTTTGCA  350

seq1  TTATGCTTATCCATAAGCTTATGACTTTGGACTTTGAAAGTATGTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTATCCATAAGCTTATGACTTTGGACTTTGAAAGTATGTTGAGA  400

seq1  CTGTAGAAGAGTATGAAGACTTTTAAAATTGAACTAAATTTATTTTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAGAGTATGAAGACTTTTAAAATTGAACTAAATTTATTTTGCAT  450

seq1  TATGCTTATCCATAAGCTTATGGGTTCAGGGAGTGTGAAGTGTGTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTATCCATAAGCTTATGGGTTCAGGGAGTGTGAAGTGTGTGCTTT  500

seq1  GAATGAAAATAGCCCCCTTAGACTCATTTATTTGAATACTTGGTCCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAATAGCCCCCTTAGACTCATTTATTTGAATACTTGGTCCCTAG  550

seq1  CTGGTAGAAGTGTTTAGGAAGGATTAGGAGGTG  583
      |||||||||||||||||||||||||||||||||
seq2  CTGGTAGAAGTGTTTAGGAAGGATTAGGAGGTG  583