BAC Information

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BAC

Clone NameB6Ng01-043B07
Chromosome7 (Build37)
Map Location 123,828,996 - 123,878,364
singlet/doubletdoublet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
Downstream geneLOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043B07.bB6Ng01-043B07.g
ACCDH869256DH869257
length1,109858
definitionDH869256|Mus musculus domesticus DNA, BAC clone: B6Ng01-043B07, 5' end.DH869257|Mus musculus domesticus DNA, BAC clone: B6Ng01-043B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,828,996 - 123,830,105)(123,877,504 - 123,878,364)
sequence
gaattcttgatcaccatctcagtgctacatgagatgagacatttggagtc
cagcttaaactgaatctccctgagcttcccagatgctaaggaaaaagcca
caggtgcctctgtattctcctatgtattaaaaaaatcataccacaccaca
ttatggccatttctgtacattgttttatcatttaatagatcactgaggtc
agggttccatattttttcctgtgggtccctgcgcatctgcccttgttaca
caagccacttccttccccatcattactaggccagttcatggcagccatca
ctggccatctggatctgaaaccaggatcccaagggactcctttcattctt
gtgcctcttccaatccattttccacttatcaggaagagggactatttgaa
attccagatatgagatgccaattctctacatagcctaataagggctgggc
tcttcctgtgtgtctgataccatcgcagcgaactctgtccccacttaccc
atgaagctctcctctctccaatcctttatgaatcactttttaggttcata
caactcagtgggatagttttggttattaccttcagatgtcaactctcccc
tccaatggtgagtggaatttatttccttattccacgattagggattaacc
atatgacttgttttagccaataggatgtgggtaggtatgacacaaatgga
ttgaagtagaacagagctgttgtgcacttcagttctgctaaggctgtgtg
agcaatgtgtctcaggtaagctgttgctcgcagtaaaatgagagatgtgc
tgcacagatttaaatggaacagataacctgtaaaccagctctgacaagag
ccacagatgcacagatcaaagaagagttggcccatcagtcaccatgttca
tgacacaggatactgttgctaagttatctcttcatggctcaattcacatc
ttcacattattgtacagttttctccaaagagaggcactcactttctctat
aatccaagcacctgtctgtctgtctgtctgtctgtctgtctgtctgtctg
ggtatctactttatgtatcattggtgtatgttatatctattaataatttt
tctatctac
gaattctcttccctttgagatgcatgacacacttcctgggtacctgccca
ctatgctgttgtgcaaaaacaaagacattacttgttgtaaagtaagagat
ccttatattgctatggaaagaagtaatcaaggcagccatttcatacctta
acagggttcaaccatgttttaagaaaaaataaccccctttgtacctctgt
gggtcttgtgcctgctgccacggtctctgtgtgtttgtatgtgcatcaat
cttgttgtgtcttgaagattctgcttccctggagtcatccacccctcagg
ctctgatcatctttccctcagtccagggactgactgagggaaagaagtgg
acactaagtcccatccctaatcaagaagctggttgcagcttgttccctgc
tgggaaagagaaaatcggtttcttcaatattgtcactggatgatgtcaat
cacagcccagggcagggcctaggtctaagagtaactggccaacacaaaat
ggactccatgtctttttgggagctttttgtttcttgttttgcttggttta
tttacttattgtttggtttagggtgttgttgttgtttgggttctgcttgt
ttccccttctttctttctttctttctttctttctttctttctttctttct
ttctttcttcctttcttcctttcttccttccttccttccttcctttcttt
ctttttttctttctttctttctttctttctttctttcttttcttttcttt
tctttgttgagaccaagaacatcaatttgggtgggtagggaagtaggaat
gtaagatttgtagtagctcaaatgaccacggttgtaaagagttagtaatg
tgctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123828996_123830105
seq2: B6Ng01-043B07.b_43_1151

seq1  GAATTCTTGATCACCATCTCAGTGCTACATGAGATGAGACATTTGGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCACCATCTCAGTGCTACATGAGATGAGACATTTGGAGTC  50

seq1  CAGCTTAAACTGAATCTCCCTGAGCTTCCCAGATGCTAAGGAAAAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAACTGAATCTCCCTGAGCTTCCCAGATGCTAAGGAAAAAGCCA  100

seq1  CAGGTGCCTCTGTATTCTCCTATGTATTAAAAAAATCATACCACACCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTCTGTATTCTCCTATGTATTAAAAAAATCATACCACACCACA  150

seq1  TTATGGCCATTTCTGTACATTGTTTTATCATTTAATAGATCACTGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCCATTTCTGTACATTGTTTTATCATTTAATAGATCACTGAGGTC  200

seq1  AGGGTTCCATATTTTTTCCTGTGGGTCCCTGCGCATCTGCCCTTGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCCATATTTTTTCCTGTGGGTCCCTGCGCATCTGCCCTTGTTACA  250

seq1  CAAGCCACTTCCTTCCCCATCATTACTAGGCCAGTTCATGGCAGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACTTCCTTCCCCATCATTACTAGGCCAGTTCATGGCAGCCATCA  300

seq1  CTGGCCATCTGGATCTGAAACCAGGATCCCAAGGGACTCCTTTCATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATCTGGATCTGAAACCAGGATCCCAAGGGACTCCTTTCATTCTT  350

seq1  GTGCCTCTTCCAATCCATTTTCCACTTATCAGGAAGAGGGACTATTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTTCCAATCCATTTTCCACTTATCAGGAAGAGGGACTATTTGAA  400

seq1  ATTCCAGATATGAGATGCCAATTCTCTACATAGCCTAATAAGGGCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGATATGAGATGCCAATTCTCTACATAGCCTAATAAGGGCTGGGC  450

seq1  TCTTCCTGTGTGTCTGATACCATCGCAGCGAACTCTGTCCCCACTTACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGTGTCTGATACCATCGCAGCGAACTCTGTCCCCACTTACCC  500

seq1  ATGAAGCTCTCCTCTCTCCAATCCTTTATGAATCACTTTTTAGGTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTCTCCTCTCTCCAATCCTTTATGAATCACTTTTTAGGTTCATA  550

seq1  CAACTCAGTGGGATAGTTTTGGTTATTACCTTCAGATGTCAACTCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGTGGGATAGTTTTGGTTATTACCTTCAGATGTCAACTCTCCCC  600

seq1  TCCAATGGTGAGTGGAATTTATTTCCTTATTCCACGATTAGGGATTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGGTGAGTGGAATTTATTTCCTTATTCCACGATTAGGGATTAACC  650

seq1  ATATGACTTGTTTTAGCCAATAGGATGTGGGTAGGTATGACACAAATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTTGTTTTAGCCAATAGGATGTGGGTAGGTATGACACAAATGGA  700

seq1  TTGAAGTAGAACAGAGCTGTTGTGCACTTCAGTTCTGCTAAGGCTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAGAACAGAGCTGTTGTGCACTTCAGTTCTGCTAAGGCTGTGTG  750

seq1  AGCAATGTGTCTCAGGTAAGCTGTTGCTCGCAGTAAAATGAGAGATGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTGTCTCAGGTAAGCTGTTGCTCGCAGTAAAATGAGAGATGTGC  800

seq1  TGCACAGATTTAAATGGAACAGATAACCTGTAAACCAGCTCTGACAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGATTTAAATGGAACAGATAACCTGTAAACCAGCTCTGACAAGAG  850

seq1  CCACAGATGCACAGATCAAAGAAGAGTTGGCCCATCAGTCACCATGTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATGCACAGATCAAAGAAGAGTTGGCCCATCAGTCACCATGTTCA  900

seq1  TGACACAGGATACTGTTGCTAAGTTATCTCTTCATGGCTTCAATTCACAT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGACACAGGATACTGTTGCTAAGTTATCTCTTCATGGC-TCAATTCACAT  949

seq1  CTTCACATTATTGTACAGTTTTCTCCAAAAGAGAGGCACTCACTTTCTCT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTCACATTATTGTACAGTTTTCTCC-AAAGAGAGGCACTCACTTTCTCT  998

seq1  ATAATCCAAGCACCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAAGCACCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC  1048

seq1  T-GGTATCTACTTTATGTATCATTTGTGTATGTTATATCTATTAATAATT  1099
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGGTATCTACTTTATGTATCATTGGTGTATGTTATATCTATTAATAATT  1098

seq1  TTTCTATCTAC  1110
      |||||||||||
seq2  TTTCTATCTAC  1109

seq1: chr7_123877504_123878364
seq2: B6Ng01-043B07.g_66_923 (reverse)

seq1  AAAGAGCACATTTACTTAACTCTTTACAACCGTGGTCATTTTGAGCTACT  50
      |||||||||| |||| |||||||||||||||||||||| |||||||||||
seq2  AAAGAGCACA-TTAC-TAACTCTTTACAACCGTGGTCA-TTTGAGCTACT  47

seq1  ACAAATCTTACATTCCTACTTCCCTACCCACCCAAATTGATGTTCTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTTACATTCCTACTTCCCTACCCACCCAAATTGATGTTCTTGGT  97

seq1  CTCAACAAAGAAAAGAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAAGAAAAGAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  147

seq1  AAGAAAAAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGAAA  197

seq1  GGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  247

seq1  AAGAAGGGGAAACAAGCAGAACCCAAACAACAACAACACCCTAAACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGAAACAAGCAGAACCCAAACAACAACAACACCCTAAACCAAA  297

seq1  CAATAAGTAAATAAACCAAGCAAAACAAGAAACAAAAAGCTCCCAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGTAAATAAACCAAGCAAAACAAGAAACAAAAAGCTCCCAAAAAG  347

seq1  ACATGGAGTCCATTTTGTGTTGGCCAGTTACTCTTAGACCTAGGCCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGTCCATTTTGTGTTGGCCAGTTACTCTTAGACCTAGGCCCTGC  397

seq1  CCTGGGCTGTGATTGACATCATCCAGTGACAATATTGAAGAAACCGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTGTGATTGACATCATCCAGTGACAATATTGAAGAAACCGATTT  447

seq1  TCTCTTTCCCAGCAGGGAACAAGCTGCAACCAGCTTCTTGATTAGGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCCAGCAGGGAACAAGCTGCAACCAGCTTCTTGATTAGGGATG  497

seq1  GGACTTAGTGTCCACTTCTTTCCCTCAGTCAGTCCCTGGACTGAGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAGTGTCCACTTCTTTCCCTCAGTCAGTCCCTGGACTGAGGGAAA  547

seq1  GATGATCAGAGCCTGAGGGGTGGATGACTCCAGGGAAGCAGAATCTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCAGAGCCTGAGGGGTGGATGACTCCAGGGAAGCAGAATCTTCAA  597

seq1  GACACAACAAGATTGATGCACATACAAACACACAGAGACCGTGGCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACAAGATTGATGCACATACAAACACACAGAGACCGTGGCAGCAG  647

seq1  GCACAAGACCCACAGAGGTACAAAGGGGGTTATTTTTTCTTAAAACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGACCCACAGAGGTACAAAGGGGGTTATTTTTTCTTAAAACATGG  697

seq1  TTGAACCCTGTTAAGGTATGAAATGGCTGCCTTGATTACTTCTTTCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCTGTTAAGGTATGAAATGGCTGCCTTGATTACTTCTTTCCATA  747

seq1  GCAATATAAGGATCTCTTACTTTACAACAAGTAATGTCTTTGTTTTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATAAGGATCTCTTACTTTACAACAAGTAATGTCTTTGTTTTTGCA  797

seq1  CAACAGCATAGTGGGCAGGTACCCAGGAAGTGTGTCATGCATCTCAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCATAGTGGGCAGGTACCCAGGAAGTGTGTCATGCATCTCAAAGG  847

seq1  GAAGAGAATTC  861
      |||||||||||
seq2  GAAGAGAATTC  858