BAC Information

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BAC

Clone NameB6Ng01-043P23
Chromosome7 (Build37)
Map Location 3,674,419 - 3,813,912
singlet/doubletdoublet
Overlap genePira1, LOC100041137, LOC100041146, Pira2, LOC675749
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3
Downstream geneLOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043P23.bB6Ng01-043P23.g
ACCDH869884DH869885
length1,055415
definitionDH869884|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P23, 5' end.DH869885|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,812,859 - 3,813,912)(3,674,419 - 3,674,839)
sequence
gaattccatgtcatagcacaggaaagagtagaaccttttcctctccaggg
acagcaagggccctggttggatgcttagttaggaaacttcgaccatccct
aacttctgtaacttctgtatctaactccacagccacagagaaccaggatc
acacaacggagaatctcatcaggatggggatggcagtcgtggtcctcatc
gtcctttcgattctagccactgaggcttggcgaagccatagacagaccca
ccatgcagctgggaactactctgaggagagaagaatgcatcttcaatgtt
ctacactctgggaaataaagatgatgacccaaagttgtcaaaaaaaaacg
aaaaaaagaaaaaaacactgttgtggtattgaggaactgctgtgatagaa
tgtctggggagcaaaagtttggggttcatagggaagtggaatttgataat
gaggtgcttcaccaacaagtgaattactgtccctccacgtactcggagcc
tttgtttcctgaaccgacactcttctgaacccagaaagtgagggaatagg
ctgtcccacctgcctggaatatctttcacctgtggattgtatttttctgt
atttctttatggggtttattcattcacatttaaaggcctctgtcatcttt
atgaattgtatttaaggacagttccttgtatgtgagtgagtgtgcatata
cgggagggttgggtgtgtgtattagcctactgccattgggtgttctttca
ggcaccttggtgggcaggagcttgggagacaaaggcttagttgatgttcc
ttgtggcagcagacctcctggaaagcatgcagtccttggggtaggaaatg
gagtactcagtgtaggttattgctctttcctaagtattcaggggagttgg
caggacagggcttggtgaggagatgcttacttgttatcctgtaggatggc
agcctctgagtaatcaggcagggtggtggctgctactattttttaaggaa
caacccataaatgacctcctgggtctatggtctctgctcagcaaactaat
cagag
cattcctgtgtatactgtgtgttgattgagtctttatccccacatcttcc
ctttttcttaccctgtccaccagcttacccttcttactaacctgaatgta
tttttgtttcttcccatgaacttctggtttttggaaatatgctattcaat
cctatgagagttcttatttccccctttcatttgataaacttgtgtatttt
ttttctctttctggctgaggtttttcttgatgtgagctgctgctgctgct
tcttcttctccttcttccccttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttcttcttcttctccttctcctcctgctcctcctccttct
cctccttcttcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3812859_3813912
seq2: B6Ng01-043P23.b_48_1102 (reverse)

seq1  CTCTGA-TAG-TTGCTGAGCA-AGA-CATTGACCCAGGA-GTCATTTTAT  45
      |||||| ||| |||||||||| ||| ||| ||||||||| |||||||   
seq2  CTCTGATTAGTTTGCTGAGCAGAGACCATAGACCCAGGAGGTCATTT--A  48

seq1  TGGTTTGTTCCTTTAAAAAATAGTAGCAGCCACAACCCTGCCTGATTACT  95
      ||| ||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TGGGTTGTTCC-TTAAAAAATAGTAGCAGCCACCACCCTGCCTGATTACT  97

seq1  CAGAGGGCTGCCATCCTACAGGATACCAGTTAAGCATCTCCTCACCAAGC  145
      |||| |||||||||||||||||||| ||  ||||||||||||||||||||
seq2  CAGA-GGCTGCCATCCTACAGGATAACAAGTAAGCATCTCCTCACCAAGC  146

seq1  CCTGTCCTGCCAACTCCCCTGAATACTTAGGAAAGAGCAATAACCTACAC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGCCAACTCCCCTGAATACTTAGGAAAGAGCAATAACCTACAC  196

seq1  TGAGTACTCCATTTCCTACCCCAAGGACTGCATGCTTTCCAGGAGGTCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTCCATTTCCTACCCCAAGGACTGCATGCTTTCCAGGAGGTCTG  246

seq1  CTGCCACAAGGAACATCAACTAAGCCTTTGTCTCCCAAGCTCCTGCCCAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAAGGAACATCAACTAAGCCTTTGTCTCCCAAGCTCCTGCCCAC  296

seq1  CAAGGTGCCTGAAAGAACACCCAATGGCAGTAGGCTAATACACACACCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCCTGAAAGAACACCCAATGGCAGTAGGCTAATACACACACCCA  346

seq1  ACCCTCCCGTATATGCACACTCACTCACATACAAGGAACTGTCCTTAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCGTATATGCACACTCACTCACATACAAGGAACTGTCCTTAAAT  396

seq1  ACAATTCATAAAGATGACAGAGGCCTTTAAATGTGAATGAATAAACCCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCATAAAGATGACAGAGGCCTTTAAATGTGAATGAATAAACCCCA  446

seq1  TAAAGAAATACAGAAAAATACAATCCACAGGTGAAAGATATTCCAGGCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATACAGAAAAATACAATCCACAGGTGAAAGATATTCCAGGCAG  496

seq1  GTGGGACAGCCTATTCCCTCACTTTCTGGGTTCAGAAGAGTGTCGGTTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAGCCTATTCCCTCACTTTCTGGGTTCAGAAGAGTGTCGGTTCA  546

seq1  GGAAACAAAGGCTCCGAGTACGTGGAGGGACAGTAATTCACTTGTTGGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAAGGCTCCGAGTACGTGGAGGGACAGTAATTCACTTGTTGGTG  596

seq1  AAGCACCTCATTATCAAATTCCACTTCCCTATGAACCCCAAACTTTTGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTCATTATCAAATTCCACTTCCCTATGAACCCCAAACTTTTGCT  646

seq1  CCCCAGACATTCTATCACAGCAGTTCCTCAATACCACAACAGTGTTTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACATTCTATCACAGCAGTTCCTCAATACCACAACAGTGTTTTTT  696

seq1  TCTTTTTTTCGTTTTTTTTTGACAACTTTGGGTCATCATCTTTATTTCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTCGTTTTTTTTTGACAACTTTGGGTCATCATCTTTATTTCCC  746

seq1  AGAGTGTAGAACATTGAAGATGCATTCTTCTCTCCTCAGAGTAGTTCCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTAGAACATTGAAGATGCATTCTTCTCTCCTCAGAGTAGTTCCCA  796

seq1  GCTGCATGGTGGGTCTGTCTATGGCTTCGCCAAGCCTCAGTGGCTAGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATGGTGGGTCTGTCTATGGCTTCGCCAAGCCTCAGTGGCTAGAAT  846

seq1  CGAAAGGACGATGAGGACCACGACTGCCATCCCCATCCTGATGAGATTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGGACGATGAGGACCACGACTGCCATCCCCATCCTGATGAGATTCT  896

seq1  CCGTTGTGTGATCCTGGTTCTCTGTGGCTGTGGAGTTAGATACAGAAGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTGTGATCCTGGTTCTCTGTGGCTGTGGAGTTAGATACAGAAGTT  946

seq1  ACAGAAGTTAGGGATGGTCGAAGTTTCCTAACTAAGCATCCAACCAGGGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTTAGGGATGGTCGAAGTTTCCTAACTAAGCATCCAACCAGGGC  996

seq1  CCTTGCTGTCCCTGGAGAGGAAAAGGTTCTACTCTTTCCTGTGCTATGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGTCCCTGGAGAGGAAAAGGTTCTACTCTTTCCTGTGCTATGAC  1046

seq1  ATGGAATTC  1054
      |||||||||
seq2  ATGGAATTC  1055

seq1: chr7_3674419_3674839
seq2: B6Ng01-043P23.g_67_487

seq1  GAATTCCATTCCTGTGTATACTGTGTGTTGATTGAGTCTTTATCCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCTGTGTATACTGTGTGTTGATTGAGTCTTTATCCCCACA  50

seq1  TCTTCCCTTTTTCTTACCCTGTCCACCAGCTTACCCTTCTTACTAACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTTTTCTTACCCTGTCCACCAGCTTACCCTTCTTACTAACCTG  100

seq1  AATGTATTTTTGTTTCTTCCCATGAACTTCTGGTTTTTGGAAATATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTTTGTTTCTTCCCATGAACTTCTGGTTTTTGGAAATATGCTA  150

seq1  TTCAATCCTATGAGAGTTCTTATTTCCCCCTTTCATTTGATAAACTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCTATGAGAGTTCTTATTTCCCCCTTTCATTTGATAAACTTGTG  200

seq1  TATTTTTTTTCTCTTTCTGGCTGAGGTTTTTCTTGATGTGAGCTGCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTCTCTTTCTGGCTGAGGTTTTTCTTGATGTGAGCTGCTGCT  250

seq1  GCTGCTTCTTCTTCTCCTTCTTCCCCTTCTTCTTCTTCTTCTTCTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCTTCTTCTCCTTCTTCCCCTTCTTCTTCTTCTTCTTCTTCTTC  300

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  350

seq1  CTTCTTCTTCTTCTTCTTCTTTTCCTTCTCCTTCTCTTCCTGTTCCTCCT  400
      ||||||||||||||||||||| | |||||||||||| ||||| |||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTCCTGCTCCTCCT  400

seq1  CTTTCTCCTCCTCCTTCCTCC  421
      | |||||||||| ||||||||
seq2  CCTTCTCCTCCTTCTTCCTCC  421