BAC Information

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BAC

Clone NameB6Ng01-044I24
Chromosome7 (Build37)
Map Location 34,474,157 - 34,591,305
singlet/doubletdoublet
Overlap geneLOC668440, Abpz, LOC100043860
Upstream geneEG270499, LOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1
Downstream geneLOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I24.bB6Ng01-044I24.g
ACCDH870280DH870281
length9841,181
definitionDH870280|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I24, 5' end.DH870281|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,474,157 - 34,474,926)(34,590,102 - 34,591,305)
sequence
gaattcttctgtgagatgtaagaacactgactttcatccatgttcattta
tctgccatgcaaccattcacaccagcacgagtttctaagttatttcacca
ttatagtacaatctaatataatgttattcagtttattaaattgtttcata
tttgtccattaggagcttcttaatgcttacggatgccagttttcacagac
atttgtgggtgagtgttcatgtgtttgtgtgcttttgtgtgtgtgtgcct
gtgtattgccccttttgttgggggatctcctatctgcgtggaatgggtct
ctgatggcaagtgggcgaaggactcggtgaatgacaaacagatatgacat
gagaggatgtgttgaatctgagtgtaatgttacaaagtgaacaccattct
tatacaatagagaaaacaaaggggtaggatgtcacagcaggcaaagtaca
ttgaagttacctgacacaaaacaaaggaatgacttcaaaatatcttacag
gaaccaggtaatatttacagtaaggataaaacagccctgcctatggtcag
ctaatgacaggtaaggatttcacaccctagtcacaatttgtgctactcct
ttgagccttgtgaaagctagcataagggagttctgctctagcagaccttc
tcatgaataatgcaataccacaacccccctctatcctaggccttgataaa
ttcttgcatgagtgcaacttggctgttcttttaagtatctgtggggaatc
tctatttttcagaagaattcaccaacttgcttctaatatgcaatgtagcc
cgctatacctggctataattaagattcctgtctcagtggaattccctaaa
tctttcatggtaaatccacctattagctaggccattgtgtattccctcat
ttgggtaagactgggctactgtcctaagtaatcactctgcaaattagccc
tgaagctattctaactctgttctttgtatgccta
gaattccaaatgacccttcatccaccccttcacgggcagagagggtgtgt
ccccagtggattggcacagcagaggaagtattacaaagggtgctaagagg
caaagctgtggtagtctctatgacactcccacctatggaagcagactgct
taggcccattcactcagccaaaagacacactggagctgtcccccttggtg
ttgccatatttgacctcttgaaaggcttctcttgagagggctttttttct
actttcagaagtgtggactgaacatacagtgctggaggaggctgaagaca
gtagagcaaagcatgagacaggggtgtgaaagcagagtgatcaacaggtt
gagctatgaaataggtcaagcacttctttgtaatgtgatagctgaaacat
ttgacaagattcaggacaggagacacaaaggtggtggaatgaaaagaggg
cagaagcagactctgaggaaggataaatgtgatccagaggacagaaactt
taggccctgtttgctacaagaggtccagggagctgtggagtctttagaga
ctcctccagggtctatagccaacctgctgctgagttctaaggaatccagc
tttcctgtccatgctgtggaggatgcttcagcagagttaggccccaattc
ttttgtaattgggcaagcagtttcacacacaaatgctgctttgtaaagtt
tgcttatcttattctctagttaaataaatgtggccaatagccaattactg
gggagaagggagatattctgggattcagttgctgtgctggggatcacaga
taggaaccatgaggagagagaagagaagaaaggaggagaaagaaaatgaa
gaggaggaggccaccaggaggcttgatggatcatgactcaaggtcagaaa
tggaccatgaagacagactgatggagtagaaataaccgtgatgtagactt
aaacaacagcaatttgttgcctatgattggatgttagttagatacctcag
aacttgtctaatttaagcttacatatcatcaataaattgcaaacatttgt
gtctcatagaggttagttagatatattactatttacgccgctcgtgctca
ctggtgccaatggagccaaaaaaacaaaggcagcccaggatgcattcttc
atctaccctttccatttgtttttatggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_34474157_34474926
seq2: B6Ng01-044I24.b_47_816

seq1  GAATTCTTCTGTGAGATGTAAGAACACTGACTTTCATCCATGTTCATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTGAGATGTAAGAACACTGACTTTCATCCATGTTCATTTA  50

seq1  TCTGCCATGCAACCATTCACACCAGCACGAGTTTCTAAGTTATTTCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATGCAACCATTCACACCAGCACGAGTTTCTAAGTTATTTCACCA  100

seq1  TTATAGTACAATCTAATATAATGTTATTCAGTTTATTAAATTGTTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTACAATCTAATATAATGTTATTCAGTTTATTAAATTGTTTCATA  150

seq1  TTTGTCCATTAGGAGCTTCTTAATGCTTACGGATGCCAGTTTTCACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCATTAGGAGCTTCTTAATGCTTACGGATGCCAGTTTTCACAGAC  200

seq1  ATTTGTGGGTGAGTGTTCATGTGTTTGTGTGCTTTTGTGTGTGTGTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGGTGAGTGTTCATGTGTTTGTGTGCTTTTGTGTGTGTGTGCCT  250

seq1  GTGTATTGCCCCTTTTGTTGGGGGATCTCCTATCTGCGTGGAATGGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGCCCCTTTTGTTGGGGGATCTCCTATCTGCGTGGAATGGGTCT  300

seq1  CTGATGGCAAGTGGGCGAAGGACTCGGTGAATGACAAACAGATATGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCAAGTGGGCGAAGGACTCGGTGAATGACAAACAGATATGACAT  350

seq1  GAGAGGATGTGTTGAATCTGAGTGTAATGTTACAAAGTGAACACCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATGTGTTGAATCTGAGTGTAATGTTACAAAGTGAACACCATTCT  400

seq1  TATACAATAGAGAAAACAAAGGGGTAGGATGTCACAGCAGGCAAAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATAGAGAAAACAAAGGGGTAGGATGTCACAGCAGGCAAAGTACA  450

seq1  TTGAAGTTACCTGACACAAAACAAAGGAATGACTTCAAAATATCTTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTACCTGACACAAAACAAAGGAATGACTTCAAAATATCTTACAG  500

seq1  GAACCAGGTAATATTTACAGTAAGGATAAAACAGCCCTGCCTATGGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGTAATATTTACAGTAAGGATAAAACAGCCCTGCCTATGGTCAG  550

seq1  CTAATGACAGGTAAGGATTTCACACCCTAGTCACAATTTGTGCTACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGACAGGTAAGGATTTCACACCCTAGTCACAATTTGTGCTACTCCT  600

seq1  TTGAGCCTTGTGAAAGCTAGCATAAGGGAGTTCTGCTCTAGCAGACCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTTGTGAAAGCTAGCATAAGGGAGTTCTGCTCTAGCAGACCTTC  650

seq1  TCATGAATAATGCAATACCACAACCCCCCTCTATCCTAGGCCTTGATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATAATGCAATACCACAACCCCCCTCTATCCTAGGCCTTGATAAA  700

seq1  TTCTTGCATGAGTGCAACTTGGCTGTTCTTTTAAGTATCTGTGGGGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCATGAGTGCAACTTGGCTGTTCTTTTAAGTATCTGTGGGGAATC  750

seq1  TCTATTTTTCAGAAGAATTC  770
      ||||||||||||||||||||
seq2  TCTATTTTTCAGAAGAATTC  770

seq1: chr7_34590102_34591305
seq2: B6Ng01-044I24.g_69_1249 (reverse)

seq1  ATCCCCATAAAACAAAAATGGAAATTGTGCTAAGATAGAAGAATGCTATC  50
      |||||||||||| | |||||||||  ||    |||| ||||||||| |||
seq2  ATCCCCATAAAA-ACAAATGGAAAGGGT----AGAT-GAAGAATGC-ATC  43

seq1  CTGGGCTGCCTTTGTCTTCTTTGTGCTCCATATGTGGCACCAGTGAGCAG  100
      ||||||||||||||| || |||| |||||||   ||||||||||||||| 
seq2  CTGGGCTGCCTTTGT-TTTTTTG-GCTCCAT---TGGCACCAGTGAGCAC  88

seq1  AAGCTGGCTGTAAATAAAGTATATAT-TCTAACTAACCTCTAATGAAGAC  149
       ||| ||| ||||||  |||| |||| |||||||||||||| ||| ||||
seq2  GAGC-GGC-GTAAAT--AGTA-ATATATCTAACTAACCTCT-ATG-AGAC  131

seq1  ACAAATGTTTGCATTTTATTTGATGATATGTAAGCCTATATTAGACAAGT  199
      ||||||||||||| |||| |||||||||||||||| || |||||||||||
seq2  ACAAATGTTTGCAATTTA-TTGATGATATGTAAGCTTAAATTAGACAAGT  180

seq1  TCTGAGTTATTCTAACTTACATCCAATCCATAGGCAACAAATTGCTTGTT  249
      |||||| || ||||||| ||||||||| ||||||||||||||||| ||||
seq2  TCTGAGGTA-TCTAACTAACATCCAAT-CATAGGCAACAAATTGC-TGTT  227

seq1  GTTTAAGTCTACATCACGGTTATTTCTACTCCATCAGTCTGTCTTCATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTCTACATCACGGTTATTTCTACTCCATCAGTCTGTCTTCATGG  277

seq1  TCCATTTCTGACCTTGAGTTCATGATCCATCAAGCCTCCTGGTGGCCTCC  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCATTTCTGACCTTGAG-TCATGATCCATCAAGCCTCCTGGTGGCCTCC  326

seq1  TCCTCTTCATTTTCTTTCTCCTCCTTTCTTCTCTTCTCTCTCCTCATGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCATTTTCTTTCTCCTCCTTTCTTCTCTTCTCTCTCCTCATGGT  376

seq1  TCCTATCTGTGATCCCCAGCACAGCAACTGAATCCCAGAATATCTCCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCTGTGATCCCCAGCACAGCAACTGAATCCCAGAATATCTCCCTT  426

seq1  CTCCCCAGTAATTGGCTATTGGCCACATTTATTTAACTAGAGAATAAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGTAATTGGCTATTGGCCACATTTATTTAACTAGAGAATAAGAT  476

seq1  AAGCAAACTTTACAAAGCAGCATTTGTGTGTGAAACTGCTTGCCCAATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACTTTACAAAGCAGCATTTGTGTGTGAAACTGCTTGCCCAATTA  526

seq1  CAAAAGAATTGGGGCCTAACTCTGCTGAAGCATCCTCCACAGCATGGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAATTGGGGCCTAACTCTGCTGAAGCATCCTCCACAGCATGGACA  576

seq1  GGAAAGCTGGATTCCTTAGAACTCAGCAGCAGGTTGGCTATAGACCCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTGGATTCCTTAGAACTCAGCAGCAGGTTGGCTATAGACCCTGG  626

seq1  AGGAGTCTCTAAAGACTCCACAGCTCCCTGGACCTCTTGTAGCAAACAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTCTAAAGACTCCACAGCTCCCTGGACCTCTTGTAGCAAACAGG  676

seq1  GCCTAAAGTTTCTGTCCTCTGGATCACATTTATCCTTCCTCAGAGTCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGTTTCTGTCCTCTGGATCACATTTATCCTTCCTCAGAGTCTGC  726

seq1  TTCTGCCCTCTTTTCATTCCACCACCTTTGTGTCTCCTGTCCTGAATCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCTCTTTTCATTCCACCACCTTTGTGTCTCCTGTCCTGAATCTT  776

seq1  GTCAAATGTTTCAGCTATCACATTACAAAGAAGTGCTTGACCTATTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGTTTCAGCTATCACATTACAAAGAAGTGCTTGACCTATTTCAT  826

seq1  AGCTCAACCTGTTGATCACTCTGCTTTCACACCCCTGTCTCATGCTTTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAACCTGTTGATCACTCTGCTTTCACACCCCTGTCTCATGCTTTGC  876

seq1  TCTACTGTCTTCAGCCTCCTCCAGCACTGTATGTTCAGTCCACACTTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTCTTCAGCCTCCTCCAGCACTGTATGTTCAGTCCACACTTCTG  926

seq1  AAAGTAGAAAAAAAGCCCTCTCAAGAGAAGCCTTTCAAGAGGTCAAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAAAAAAAGCCCTCTCAAGAGAAGCCTTTCAAGAGGTCAAATAT  976

seq1  GGCAACACCAAGGGGGACAGCTCCAGTGTGTCTTTTGGCTGAGTGAATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACACCAAGGGGGACAGCTCCAGTGTGTCTTTTGGCTGAGTGAATGG  1026

seq1  GCCTAAGCAGTCTGCTTCCATAGGTGGGAGTGTCATAGAGACTACCACAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGCAGTCTGCTTCCATAGGTGGGAGTGTCATAGAGACTACCACAG  1076

seq1  CTTTGCCTCTTAGCACCCTTTGTAATACTTCCTCTGCTGTGCCAATCCAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTCTTAGCACCCTTTGTAATACTTCCTCTGCTGTGCCAATCCAC  1126

seq1  TGGGGACACACCCTCTCTGCCCGTGAAGGGGTGGATGAAGGGTCATTTGG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACACACCCTCTCTGCCCGTGAAGGGGTGGATGAAGGGTCATTTGG  1176

seq1  AATTC  1204
      |||||
seq2  AATTC  1181