BAC Information

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BAC

Clone NameB6Ng01-044L16
Chromosome7 (Build37)
Map Location 149,728,692 - 149,866,069
singlet/doubletdoublet
Overlap geneNctc1, H19, Igf2, Igf2as, Ins2
Upstream geneAp2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23
Downstream geneEG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L16.bB6Ng01-044L16.g
ACCDH870400DH870401
length1,1061,057
definitionDH870400|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L16, 5' end.DH870401|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,864,959 - 149,866,069)(149,728,692 - 149,729,752)
sequence
gaattctgctttccttctacctctgagagagagctggggactcggctgag
ttaagaacccagctatcaattggaactgtgaaacagtccaagggacaaag
atactaggtccccaactgcaacttcctggggaatgatgtggaaaaatgct
cagccaaggacaaagaaagcatcacccactctggaacaatgtcccctgct
gtgaactggttcatcaggccatcagggccccttgttaagactctaattac
cctaggactaagtagaggtgttgacgtccaatgagcgctttctgcagacc
tagcaccagggaagtgtttggaaactgcagcttcagcccctctggccatc
tgctgacctaccccacctggagcccttaatgggtcaaacagcaaagtcca
gggggcagagaggaggtgctttggtctataaaggtagtggggacccagta
accaccagccctaagtgatccgctacaatcaaaaaccatcagcaagcagg
aaggtactcttctcagtgggcctggctccccagctaagacctcagggact
tgaggtaggatatagcctcctctcttacgtgaaacttttgctatcctcaa
cccagcctatcttccaggttattgtttcaacatggccctgtggatgcgct
tcctgcccctgctggccctgctcttcctctgggagtcccaccccacccag
gcttttgtcaagcagcacctttgtggttcccacctggtggaggctctcta
cctggtgtgtggggagcgtggcttcttctacacacccatgtcccgccgtg
aagtggaggacccacaaggtgagttctgccactgaaatctgtccccagtg
ctaactaccctggttttctcacacttgggacattgtaaattgtgtcctag
tgtggagggtctcgggataaccaggagtggggacacgtttctgggggaag
ctagacatatgtaaacatggcagctgcaggaatgagtaagattcctgcct
tatgggtccttgtggtagtaacttgggacatgtgactagaatcctagata
ggtacctatttagggcctcatagagcactgcactgacctgatgatgagta
gtgctt
gaattcttgctctgcgacatagctctgctgtgggctgtgggttctgagca
gggcctggggccccctgagatggagtcagtgctctcagccccacccccac
tggagtgcacgggcgggcgggcgagcaggccggtgggcgggagaaggggg
gtatgctggctgaggctgaaggccagcaaaagcacccttcaagtgttgat
ttagaggatgggaaggtcaggaagtgggcaggagaactgtattttcctta
gagaaataattcatggggccccccgggcatggacgaccctcactgttggg
ggaggaggaatcccatctttcacgctgcctgcacaaggaactctttgcaa
cctccacaggggcacaggcagacttgggggccaaggtcacccttcatcat
gtcctgctggcttccacagtccccccccagctttggccttgtcacacata
cagacacacacacagacacacacacacataccccaccagggccctcacag
gcccaggctacatcccgctcttttagccaggggaggaggaaggggcctct
agctgctggtgactgctttcctgatacccaggaggctacctggataggga
agctaggaggatcccgggtgcagtagtcacttcagtgtagaaccaagtca
cctacaataaggcagcctaggcgggcagatgaccatagacatggaaacag
ggtcagttgcctccttgttaccagacccctttgtgtatataagcccacca
actccagaggagctgcatgcattagggcaaagcctcaaggggggaccttc
tgtacttagccccaaagagtgtattcaccattagggcaatagagggcagg
ggtaggctactaaattgtctcatgtgcaagtacacacactcactcacaca
cacacacacacacacaccctcatggaccatatcccttttgatcccagtct
gggctggagacttgaagattgcctgcccctgtgactcaggggtcctggag
aattccatatccttctaggttttatgtgcctgttgcccctctgggctgga
gagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_149864959_149866069
seq2: B6Ng01-044L16.b_45_1150 (reverse)

seq1  AAGC-CTACTCATCTTCA-GTCAGTGCAGTGCTCTATGAGGGCCCTAAAT  48
      |||| ||||||||| ||| |||||||||||||||||||| ||||||||||
seq2  AAGCACTACTCATCATCAGGTCAGTGCAGTGCTCTATGA-GGCCCTAAAT  49

seq1  AGGTACCTATCCTGGGATCTAGTCACATGTCCCAAGTTACTACCACCAAG  98
      |||||||||||  ||  |||||||||||||||||||||||||||| ||||
seq2  AGGTACCTATCTAGGATTCTAGTCACATGTCCCAAGTTACTACCA-CAAG  98

seq1  GACCCCTTAAGGCAGGATTCTTACTCATTCCTGGCAGCTGCCATGTTTAC  148
      || ||| |||||||||| |||||||||||||| |||||||||||||||||
seq2  GA-CCCATAAGGCAGGAATCTTACTCATTCCT-GCAGCTGCCATGTTTAC  146

seq1  ATATGTCTAGCTTCCCCCAGAAACGTGTCCCCACTCCCTGGTTATCCCGA  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATATGTCTAGCTTCCCCCAGAAACGTGTCCCCACT-CCTGGTTATCCCGA  195

seq1  GACCCTCCACACCTAGGACACAATTTACAATGTCCCAAGTGTGAAGAAAA  248
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  GACCCTCCACA-CTAGGACACAATTTACAATGTCCCAAGTGTG-AGAAAA  243

seq1  CCAGGGTAGTTAGCACTGGGGACAGAATTCAGTGGCAGAACTCACCTTGT  298
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGGGTAGTTAGCACTGGGGACAGATTTCAGTGGCAGAACTCACCTTGT  293

seq1  GGGTCCTCCACTTCACGGCGGGACATGGGTGTGTAGAAGAAGCCACGCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCCACTTCACGGCGGGACATGGGTGTGTAGAAGAAGCCACGCTC  343

seq1  CCCACACACCAGGTAGAGAGCCTCCACCAGGTGGGAACCACAAAGGTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACCAGGTAGAGAGCCTCCACCAGGTGGGAACCACAAAGGTGCT  393

seq1  GCTTGACAAAAGCCTGGGTGGGGTGGGACTCCCAGAGGAAGAGCAGGGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACAAAAGCCTGGGTGGGGTGGGACTCCCAGAGGAAGAGCAGGGCC  443

seq1  AGCAGGGGCAGGAAGCGCATCCACAGGGCCATGTTGAAACAATAACCTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGCAGGAAGCGCATCCACAGGGCCATGTTGAAACAATAACCTGG  493

seq1  AAGATAGGCTGGGTTGAGGATAGCAAAAGTTTCACGTAAGAGAGGAGGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGCTGGGTTGAGGATAGCAAAAGTTTCACGTAAGAGAGGAGGCT  543

seq1  ATATCCTACCTCAAGTCCCTGAGGTCTTAGCTGGGGAGCCAGGCCCACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTACCTCAAGTCCCTGAGGTCTTAGCTGGGGAGCCAGGCCCACTG  593

seq1  AGAAGAGTACCTTCCTGCTTGCTGATGGTTTTTGATTGTAGCGGATCACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTACCTTCCTGCTTGCTGATGGTTTTTGATTGTAGCGGATCACT  643

seq1  TAGGGCTGGTGGTTACTGGGTCCCCACTACCTTTATAGACCAAAGCACCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGGTGGTTACTGGGTCCCCACTACCTTTATAGACCAAAGCACCT  693

seq1  CCTCTCTGCCCCCTGGACTTTGCTGTTTGACCCATTAAGGGCTCCAGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCCCCCTGGACTTTGCTGTTTGACCCATTAAGGGCTCCAGGTG  743

seq1  GGGTAGGTCAGCAGATGGCCAGAGGGGCTGAAGCTGCAGTTTCCAAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTCAGCAGATGGCCAGAGGGGCTGAAGCTGCAGTTTCCAAACAC  793

seq1  TTCCCTGGTGCTAGGTCTGCAGAAAGCGCTCATTGGACGTCAACACCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGTGCTAGGTCTGCAGAAAGCGCTCATTGGACGTCAACACCTCT  843

seq1  ACTTAGTCCTAGGGTAATTAGAGTCTTAACAAGGGGCCCTGATGGCCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCCTAGGGTAATTAGAGTCTTAACAAGGGGCCCTGATGGCCTGA  893

seq1  TGAACCAGTTCACAGCAGGGGACATTGTTCCAGAGTGGGTGATGCTTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGTTCACAGCAGGGGACATTGTTCCAGAGTGGGTGATGCTTTCT  943

seq1  TTGTCCTTGGCTGAGCATTTTTCCACATCATTCCCCAGGAAGTTGCAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTGGCTGAGCATTTTTCCACATCATTCCCCAGGAAGTTGCAGTT  993

seq1  GGGGACCTAGTATCTTTGTCCCTTGGACTGTTTCACAGTTCCAATTGATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTAGTATCTTTGTCCCTTGGACTGTTTCACAGTTCCAATTGATA  1043

seq1  GCTGGGTTCTTAACTCAGCCGAGTCCCCAGCTCTCTCTCAGAGGTAGAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTCTTAACTCAGCCGAGTCCCCAGCTCTCTCTCAGAGGTAGAAG  1093

seq1  GAAAGCAGAATTC  1111
      |||||||||||||
seq2  GAAAGCAGAATTC  1106

seq1: chr7_149728692_149729752
seq2: B6Ng01-044L16.g_68_1124

seq1  GAATTCTTGCTCTGCGACATAGCTCTGCTGTGGGCTGTGGGTTCTGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTCTGCGACATAGCTCTGCTGTGGGCTGTGGGTTCTGAGCA  50

seq1  GGGCCTGGGGCCCCCTGAGATGGAGTCAGTGCTCTCAGCCCCACCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGGCCCCCTGAGATGGAGTCAGTGCTCTCAGCCCCACCCCCAC  100

seq1  TGGAGTGCACGGGCGGGCGGGCGAGCAGGCCGGTGGGCGGGAGAAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGCACGGGCGGGCGGGCGAGCAGGCCGGTGGGCGGGAGAAGGGGG  150

seq1  GTATGCTGGCTGAGGCTGAAGGCCAGCAAAAGCACCCTTCAAGTGTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTGGCTGAGGCTGAAGGCCAGCAAAAGCACCCTTCAAGTGTTGAT  200

seq1  TTAGAGGATGGGAAGGTCAGGAAGTGGGCAGGAGAACTGTATTTTCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGATGGGAAGGTCAGGAAGTGGGCAGGAGAACTGTATTTTCCTTA  250

seq1  GAGAAATAATTCATGGGGCCCCCCGGGCATGGACGACCCTCACTGTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAATTCATGGGGCCCCCCGGGCATGGACGACCCTCACTGTTGGG  300

seq1  GGAGGAGGAATCCCATCTTTCACGCTGCCTGCACAAGGAACTCTTTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAATCCCATCTTTCACGCTGCCTGCACAAGGAACTCTTTGCAA  350

seq1  CCTCCACAGGGGCACAGGCAGACTTGGGGGCCAAGGTCACCCTTCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAGGGGCACAGGCAGACTTGGGGGCCAAGGTCACCCTTCATCAT  400

seq1  GTCCTGCTGGCTTCCACAGTCCCCCCCCAGCTTTGGCCTTGTCACACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTGGCTTCCACAGTCCCCCCCCAGCTTTGGCCTTGTCACACATA  450

seq1  CAGACACACACACAGACACACACACACATACCCCACCAGGGCCCTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACACAGACACACACACACATACCCCACCAGGGCCCTCACAG  500

seq1  GCCCAGGCTACATCCCGCTCTTTTAGCCAGGGGAGGAGGAAGGGGCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTACATCCCGCTCTTTTAGCCAGGGGAGGAGGAAGGGGCCTCT  550

seq1  AGCTGCTGGTGACTGC-TTCCTGATACCCAGGAGGCTACCTGGATAGGGA  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTGCTGGTGACTGCTTTCCTGATACCCAGGAGGCTACCTGGATAGGGA  600

seq1  AGCTAGGAGGATCCCGGGTGCAGTAGTCACTTCAGTGTAGAACCAAGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGAGGATCCCGGGTGCAGTAGTCACTTCAGTGTAGAACCAAGTCA  650

seq1  CCTACAATAAGGCAGCCTAGGCGGGCAGATGACCATAGACATGGAAACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAATAAGGCAGCCTAGGCGGGCAGATGACCATAGACATGGAAACAG  700

seq1  GGTCAGTTGCCTCCTTGTTACCAGACCCCTTTGTGTATATAAGCCCACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTGCCTCCTTGTTACCAGACCCCTTTGTGTATATAAGCCCACCA  750

seq1  ACTCCAGAGGAGCTGCATGCATTAGGGCAAAGCCTCAAGGGGGGACCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAGGAGCTGCATGCATTAGGGCAAAGCCTCAAGGGGGGACCTTC  800

seq1  TGTACTTAGCCCCAAAGAGTGTATTCA-CAATAGGGCAATAGAGGGCAGG  848
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  TGTACTTAGCCCCAAAGAGTGTATTCACCATTAGGGCAATAGAGGGCAGG  850

seq1  GGTAGGCTACTAAATTGTCTCATGTGCAAGTACACACACACACACACACA  898
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  GGTAGGCTACTAAATTGTCTCATGTGCAAGTACACACACTCACTCACACA  900

seq1  CACACACACACACACACCCTCATGAACCATAATCCACTTTTGATCCCAGT  948
      |||||||||||||||||||||||| ||||| |||| ||||||||||||||
seq2  CACACACACACACACACCCTCATGGACCAT-ATCC-CTTTTGATCCCAGT  948

seq1  CT-GGCTGGTAGAACTTG-AGATTGCCTGCCCCTGTGACTCAAGGGGTCC  996
      || |||||| || ||||| |||||||||||||||||||||| ||||||||
seq2  CTGGGCTGG-AG-ACTTGAAGATTGCCTGCCCCTGTGACTC-AGGGGTCC  995

seq1  T-GAGATTTCCATATCTTTCTCAGGTTTTTATGTGCCTTGTTGGCCCCTC  1045
      | |||| ||||||||| |||| ||| ||||||||||| |||| |||||||
seq2  TGGAGAATTCCATATCCTTCT-AGG-TTTTATGTGCC-TGTT-GCCCCTC  1041

seq1  TGGGCTGGTGAGACTT  1061
      |||||||| |||||||
seq2  TGGGCTGGAGAGACTT  1057