BAC Information

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BAC

Clone NameB6Ng01-045A05
Chromosome7 (Build37)
Map Location 81,659,146 - 81,683,004
singlet/doubletdoublet
Overlap geneSlco3a1
Upstream geneChd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, EG665308
Downstream geneEG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045A05.bB6Ng01-045A05.g
ACCDH870596DH870597
length9041,117
definitionDH870596|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A05, 5' end.DH870597|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,682,797 - 81,683,004)(81,659,146 - 81,659,870)
sequence
gaattctccacactgatttctatacttgctggagcagttcacattcccac
taacagtgagtgagaattgccttcccctcttgcattgtttgtttgttgtt
ttctcagtaactctggaattcttgggtaagattgacactcaaagggaatg
gagaaatctgaccaggccccacccatagaggaagaactacagataatgac
tacttcggggagaaatagtattttccagggatgaaccccctaaatgggtg
tctaatgccatccagtcagccctaaaaaatgcaaagaagaaacactaaat
gtttctacactagactgtattttttgcacagacacacacacacacacaca
cacacacacacagaaggagacagacagacagacagacagacagacacata
cacacagcagtaatcactaaagaaaaagagccatattttaaagggagcaa
ggaagtataggggctagaggaaagagaggggaaggaaaataatgtaattc
tatcttaattaaatgagatgttttattgtctttgaaattttcaatgtact
ttgatcacattcacccccccccatccaccccatcaccctacccctctgac
tttgtatcatcttcctctttacttgccttcctagtccaattgtgctgctc
ctgcttctgagagaagacaggtagaatttgtctttgtgtgtctggtttac
ctcatttgccataatgatctctgtttcctggatgctcgattccccccaga
tgacgctatggcatgtccctcccacgtgcctgctctaagttccaaaggta
attggtatccgtgtttgtcacattgcatattttgttctcccaactacacc
aagatgtccattcactctcatcacagtatcagtgaggaaactgagctaag
ggaa
gaattctctgaggctcaagggaaaaatgagttaaataaataagaaactag
ttaacacaaaggaagccagtaaagaaggaaccagagaaacaaagacatga
gacacaagacaaatcacaacatggctgatagaaactcaacttccatcaac
tgatcacggtccccaaaatacatgaaaagagactgacaaaatgaaaggag
aaattgagccataatggctgtacaggttaacagcccactcaataactgat
ataaacagcagaccaaaaaaaaaaaaaatcagtaaggatgaaaaggattt
gaacaatgctctctcccattttaagctcaaccagaaaatgacaaacagct
catttttcaaaatcggcaagtgtcatttgaatagacatttcatcaaagaa
gatgtacacatttctaataagcatctgaaaagatgcttagcaacattagt
cttagagaaatgccaatcagaaccacagtgatatattactacacgcccac
cagagtgtctgtttaaaaagacacagagaccaagtcttcaaatactgcta
gtgagaatgtgaagacaatgcgaacagatgctttggaaagtggtggggca
atttattaaaatattaaactttattttataatggggtaatttctctccca
gagctctactgaagaacgatgaaaacccatacatcacaaaagcccctaaa
ttgtggcagtgtgcatcagagtccgaaacgactcaaatattcatcaacgc
acacagagaaacataatgtgttacatccataagtctgatggcaatgtcat
ctactaaatcaatatcatagagttccaatagaaggaacagtactcagcag
tgaagttaaataaactattgatacatgtggaagataaataaatctcaaaa
agacaacactccatttatatgaacatcctgaaaaagattatatatatcaa
aatggcactgggaggaagctcagcagctgacagctgttgtaactaaagtt
tctctaaatctggtgcctctttggcttcctcatgtacgcgtgccattatg
cccataaattaagcaaaaaacacctctaactaaaataaatagtatgttta
tgtatttagaaatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_81682797_81683004
seq2: B6Ng01-045A05.b_124_403 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTG----------TGTGT  40
      |||||||||||||||||||||||||||||||||||           || |
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGCAAAAAATACAGTCT  50

seq1  -GTGT-------GTGTGTGTGTCCCC-----------GAAGTCTGA----  67
       ||||        |  |||| ||  |            | | ||||    
seq2  AGTGTAGAAACATTTAGTGTTTCTTCTTTGCATTTTTTAGGGCTGACTGG  100

seq1  ------------ACCCTCTTCACAGG-----ACCTTTTAAAGA-------  93
                  ||||  ||    ||      |||   ||| |       
seq2  ATGGCATTAGACACCCATTTAGGGGGTTCATCCCTGGAAAATACTATTTC  150

seq1  -TCCAGAAGTAAAAGTCA-CATC----GCTCAGCCAAGCTGACCAGGTGC  137
        || |||||   |||||  |||    | ||  ||    ||    ||  |
seq2  TCCCCGAAGT---AGTCATTATCTGTAGTTCTTCCTCTATGGGTGGGGCC  197

seq1  TGGGAACACCACCCTCGTAGCCTT---GT-TCCATCT----CAA-----C  174
      |||  | |   | | | |  ||||   || || ||||    |||     |
seq2  TGGTCAGATTTCTC-CATTCCCTTTGAGTGTCAATCTTACCCAAGAATTC  246

seq1  TACAGGCTGTAGGAAAACAACAAACAAACAATGC  208
       | ||    |  ||||||||||||||||||||||
seq2  CAGAGTTACTGAGAAAACAACAAACAAACAATGC  280

seq1: chr7_81659146_81659870
seq2: B6Ng01-045A05.g_478_1184

seq1  TTTCTAATAAGCATCTGAAAAGATGCTTAGCAACATTAGTCTTAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATAAGCATCTGAAAAGATGCTTAGCAACATTAGTCTTAGAGAAA  50

seq1  TGCCAATCAGAACCACAGTGATATATTACTACACGCCCACCAGAGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATCAGAACCACAGTGATATATTACTACACGCCCACCAGAGTGTCT  100

seq1  GTTTAAAAAGACACAGAGACCAAGTCTTCAAATACTGCTAGTGAGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAGACACAGAGACCAAGTCTTCAAATACTGCTAGTGAGAATGT  150

seq1  GAAGACAATGCGAACAGATGCTTTGGAAAGTGGTGGGGCAATTTATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAATGCGAACAGATGCTTTGGAAAGTGGTGGGGCAATTTATTAAA  200

seq1  ATATTAAACTTTATTTTATAATGGGGTAATTTCTCTCCCAGAGCTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAACTTTATTTTATAATGGGGTAATTTCTCTCCCAGAGCTCTACT  250

seq1  GAAGAACGATGAAAACCCATACATCACAAAAGCCCCTAAATTGTGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACGATGAAAACCCATACATCACAAAAGCCCCTAAATTGTGGCAGT  300

seq1  GTGCATCAGAGTCCGAAACGACTCAAATATTCATCAACGCACACAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCAGAGTCCGAAACGACTCAAATATTCATCAACGCACACAGAGAA  350

seq1  ACATAATGTGTTACATCCATAAGTCTGATGGCAATGTCATCTACTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGTGTTACATCCATAAGTCTGATGGCAATGTCATCTACTAAATC  400

seq1  AATATCATAGAGTTCCAATAGAAGGAACAGTACTCAGCAGTGAAGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATAGAGTTCCAATAGAAGGAACAGTACTCAGCAGTGAAGTTAAA  450

seq1  TAAACTATTGATACATGTGGAAGATAAATAAATCTCAAAAAGACAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTGATACATGTGGAAGATAAATAAATCTCAAAAAGACAACACT  500

seq1  CCATTTATATGAACATCCTGAAAAAGATTAATATATATCAAAAGGGCACT  550
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  CCATTTATATGAACATCCTGAAAAAGATT-ATATATATCAAAATGGCACT  549

seq1  GGGAGGAAGGCTCAGCAGCTGACAGCTGTTTGTAACTAAAGTTTCTCTAA  600
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  GGGAGGAA-GCTCAGCAGCTGACAGCTG-TTGTAACTAAAGTTTCTCTAA  597

seq1  ATCTGGTGCCCTCTTTTGGCTTCCTCAAGTACCGCGTGCACATTAGTGCA  650
      |||||||| |||| ||||||||||||| ||| ||||||| ||||| ||| 
seq2  ATCTGGTG-CCTC-TTTGGCTTCCTCATGTA-CGCGTGC-CATTA-TGCC  642

seq1  CATACATATAAGCAGACAAACACTCATAAACATAAAATAAAAATAAGTAA  700
      |||| || |||||| | ||||||   |||   |||||||||    |||  
seq2  CATAAAT-TAAGCA-AAAAACACCTCTAA--CTAAAATAAA---TAGT--  683

seq1  ATGTTTTATGTATTTAGAAATAGAA  725
      ||| |||||||||||||||||||||
seq2  ATG-TTTATGTATTTAGAAATAGAA  707