BAC Information

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BAC

Clone NameB6Ng01-045L21
Chromosome7 (Build37)
Map Location 17,340,823 - 17,523,351
singlet/doubletdoublet
Overlap geneSlc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3
Upstream geneObox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1
Downstream geneEG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045L21.bB6Ng01-045L21.g
ACCDH871111DH871112
length9671,103
definitionDH871111|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L21, 5' end.DH871112|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,522,384 - 17,523,351)(17,340,823 - 17,341,934)
sequence
gaattccctgatatttttgcatccacttcctgagagccgggccaaagagt
ccgcccccgcagtgtccagtaaaatactccttttctttttctttctaaga
ctgggtcctctctcctgttcctccctttccttgagcaacccttcattttt
ttttcaatgccaatactttattttcacgtttctgtaaaatgggtatggct
accagagaacagtccattattgtgctctaagtacaatgctgaagcaacag
actagcctaagatatatcaagaccgtgactcaaaatatcataagtaagca
tataaatttttttaaaattatatagaagctaggtagtggtgatggtggtg
gtccacacctttaatcccagaactcaagaggtggaagtgggctgatctct
gagttcaccaccagtctggtctactgagcgacttctagaaccaggaccac
acagaggaaacacaattatgtatgtgtcggagtgcaatgcccagggcaga
cagaagggggcgctagtctcctggagctggcgtccctgacctgtgagtca
gccagcatgggaactgggaacctaattcaggtcctttggaaaagcagcct
gtgcttttaactatcagtcatttctccagtgcacccccattttttccttt
tcttttggagctagagagatggctcaacagttaaaagcactggctgctct
tccagaggacccaggttcaattcccagcaccacatgacatctcacagctg
tgataactccagttccagggatctgactccctcacacagacatacataca
ttcaggcaaaacaccaatgcacataaaataagtaaataagtaaatcgggt
ttttttttaatttgtataatattttattttatacaaatgaaaaataagtg
tgtcaagggatggcaggatgtctcagtggggtaaaacacatgtgttacct
ggatgatccaagtcaaa
gaattcaaagcgaagatggatgagattactcttctttgggcctagggaac
agagaaccccgcccagcccagagggggaatgtgagactggagataagggt
ggcctcaggccagacacctgctggagctgtgtcaacgttaaccagggtca
gcctctcacccatgatgcaatccccaaattggctacaacaccccccagaa
ttgatacatcaccggtggggcgctccttgtgcccgctgcagagttagggc
cggccagagcctgatttccggaactacagaggaaccaccgtcctctctgg
cccttagcctggagtctctaaggggattcctgactcgaattccacatccc
atcctgcaggaaatcctgttgattccgccgtggaaacacaggccagccct
gacagctactccagcaccatcatctcctgcgcgactaaaacaatcacctc
cgtagagcttccgagccagctgccaacagctgccagcacaccaccaggtc
tggcagacttgagagaaggaagccagaaaagggtgcccagtgccgccctg
ggattagaattacagacactgtgagccacttgaatgctgggaaccgaact
cgggtcttttgtgagagcaatgctgctcttaactgctgaacactctctcc
caagatggtctcacactcatgatccccctgcctcctctccttcagcatat
cctatggttgtgtaccagcatgcccgactctctcataaacaccatctctg
cttcatggttatttgctctgaattttacttctctgctgaagctatgaatt
ccagtttgaccagattcgaggtccctgtggggaaagtgacctctccaggc
tgtggtggtcaagggagtagcctgggctattgtcatgaaatggcacccct
acctccaaagaaaaagatcccagacacctcccagtaagcatcttgacttc
tcaccttcacttcctctcgtctgtaaactgattttttttctacagtcgtt
attctgctttcccaagttaagtatataaaggacgctctaggctgcaggat
ggctccacgtgctcacaactgtctggatttccaaatctggatatccttac
aca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17522384_17523351
seq2: B6Ng01-045L21.b_43_1009 (reverse)

seq1  TTTGAACTTGGATCAT-CAGGTAACACATGTGTTTTTACCCACTGAGACA  49
      |||| ||||||||||| |||||||||||||||||||  ||||||||||||
seq2  TTTG-ACTTGGATCATCCAGGTAACACATGTGTTTTACCCCACTGAGACA  49

seq1  TCCTGCCATCCCTTGACACACTTATTTTTTCATTTGTAT-AAATAAAATA  98
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TCCTGCCATCCCTTGACACACTTA-TTTTTCATTTGTATAAAATAAAATA  98

seq1  TTATACAAATTAAAAAAAAAACCCGATTTACTTATTTACTTATTTTATGT  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAATT-AAAAAAAAACCCGATTTACTTATTTACTTATTTTATGT  147

seq1  GCATTGGTGTTTTGCCTGAATGTATGTATGTCTGTGTGAGGGAGTCAGAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTGTTTTGCCTGAATGTATGTATGTCTGTGTGAGGGAGTCAGAT  197

seq1  CCCTGGAACTGGAGTTATCACAGCTGTGAGATGTCATGTGGTGCTGGGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAACTGGAGTTATCACAGCTGTGAGATGTCATGTGGTGCTGGGAA  247

seq1  TTGAACCTGGGTCCTCTGGAAGAGCAGCCAGTGCTTTTAACTGTTGAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTGGGTCCTCTGGAAGAGCAGCCAGTGCTTTTAACTGTTGAGCC  297

seq1  ATCTCTCTAGCTCCAAAAGAAAAGGAAAAAATGGGGGTGCACTGGAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTAGCTCCAAAAGAAAAGGAAAAAATGGGGGTGCACTGGAGAAA  347

seq1  TGACTGATAGTTAAAAGCACAGGCTGCTTTTCCAAAGGACCTGAATTAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATAGTTAAAAGCACAGGCTGCTTTTCCAAAGGACCTGAATTAGG  397

seq1  TTCCCAGTTCCCATGCTGGCTGACTCACAGGTCAGGGACGCCAGCTCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTTCCCATGCTGGCTGACTCACAGGTCAGGGACGCCAGCTCCAG  447

seq1  GAGACTAGCGCCCCCTTCTGTCTGCCCTGGGCATTGCACTCCGACACATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAGCGCCCCCTTCTGTCTGCCCTGGGCATTGCACTCCGACACATA  497

seq1  CATAATTGTGTTTCCTCTGTGTGGTCCTGGTTCTAGAAGTCGCTCAGTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGTGTTTCCTCTGTGTGGTCCTGGTTCTAGAAGTCGCTCAGTAG  547

seq1  ACCAGACTGGTGGTGAACTCAGAGATCAGCCCACTTCCACCTCTTGAGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTGGTGGTGAACTCAGAGATCAGCCCACTTCCACCTCTTGAGTT  597

seq1  CTGGGATTAAAGGTGTGGACCACCACCATCACCACTACCTAGCTTCTATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGGACCACCACCATCACCACTACCTAGCTTCTATA  647

seq1  TAATTTTAAAAAAATTTATATGCTTACTTATGATATTTTGAGTCACGGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAAAAAATTTATATGCTTACTTATGATATTTTGAGTCACGGTC  697

seq1  TTGATATATCTTAGGCTAGTCTGTTGCTTCAGCATTGTACTTAGAGCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATATCTTAGGCTAGTCTGTTGCTTCAGCATTGTACTTAGAGCACA  747

seq1  ATAATGGACTGTTCTCTGGTAGCCATACCCATTTTACAGAAACGTGAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGACTGTTCTCTGGTAGCCATACCCATTTTACAGAAACGTGAAAA  797

seq1  TAAAGTATTGGCATTGAAAAAAAAATGAAGGGTTGCTCAAGGAAAGGGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATTGGCATTGAAAAAAAAATGAAGGGTTGCTCAAGGAAAGGGAG  847

seq1  GAACAGGAGAGAGGACCCAGTCTTAGAAAGAAAAAGAAAAGGAGTATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAGAGAGGACCCAGTCTTAGAAAGAAAAAGAAAAGGAGTATTTT  897

seq1  ACTGGACACTGCGGGGGCGGACTCTTTGGCCCGGCTCTCAGGAAGTGGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACACTGCGGGGGCGGACTCTTTGGCCCGGCTCTCAGGAAGTGGAT  947

seq1  GCAAAAATATCAGGGAATTC  968
      ||||||||||||||||||||
seq2  GCAAAAATATCAGGGAATTC  967

seq1: chr7_17340823_17341934
seq2: B6Ng01-045L21.g_67_1169

seq1  GAATTCAAAGCGAAGATGGATGAGATTACTCTTCTTTGGGCCTAGGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCGAAGATGGATGAGATTACTCTTCTTTGGGCCTAGGGAAC  50

seq1  AGAGAACCCCGCCCAGCCCAGAGGGGGAATGTGAGACTGGAGATAAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCCCGCCCAGCCCAGAGGGGGAATGTGAGACTGGAGATAAGGGT  100

seq1  GGCCTCAGGCCAGACACCTGCTGGAGCTGTGTCAACGTTAACCAGGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGCCAGACACCTGCTGGAGCTGTGTCAACGTTAACCAGGGTCA  150

seq1  GCCTCTCACCCATGATGCAATCCCCAAATTGGCTACAACACCCCCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCACCCATGATGCAATCCCCAAATTGGCTACAACACCCCCCAGAA  200

seq1  TTGATACATCACCGGTGGGGCGCTCCTTGTGCCCGCTGCAGAGTTAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACATCACCGGTGGGGCGCTCCTTGTGCCCGCTGCAGAGTTAGGGC  250

seq1  CGGCCAGAGCCTGATTTCCGGAACTACAGAGGAACCACCGTCCTCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGAGCCTGATTTCCGGAACTACAGAGGAACCACCGTCCTCTCTGG  300

seq1  CCCTTAGCCTGGAGTCTCTAAGGGGATTCCTGACTCGAATTCCACATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGCCTGGAGTCTCTAAGGGGATTCCTGACTCGAATTCCACATCCC  350

seq1  ATCCTGCAGGAAATCCTGTTGATTCCGCCGTGGAAACACAGGCCAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCAGGAAATCCTGTTGATTCCGCCGTGGAAACACAGGCCAGCCCT  400

seq1  GACAGCTACTCCAGCACCATCATCTCCTGCGCGACTAAAACAATCACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACTCCAGCACCATCATCTCCTGCGCGACTAAAACAATCACCTC  450

seq1  CGTAGAGCTTCCGAGCCAGCTGCCAACAGCTGCCAGCACACCACCAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAGCTTCCGAGCCAGCTGCCAACAGCTGCCAGCACACCACCAGGTC  500

seq1  TGGCAGACTTGAGAGAAGGAAGCCAGAAAAGGGTGCCCAGTGCCGCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACTTGAGAGAAGGAAGCCAGAAAAGGGTGCCCAGTGCCGCCCTG  550

seq1  GGATTAGAATTACAGACACTGTGAGCCACTTGAATGCTGGGAACCGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGAATTACAGACACTGTGAGCCACTTGAATGCTGGGAACCGAACT  600

seq1  CGGGTCTTTTGTGAGAGCAATGCTGCTCTTAACTGCTGAACACTCTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTTTTGTGAGAGCAATGCTGCTCTTAACTGCTGAACACTCTCTCC  650

seq1  CAAGATGGTCTCACACTCATGATCCCCCTGCCTCCTCTCCTTCAGCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGTCTCACACTCATGATCCCCCTGCCTCCTCTCCTTCAGCATAT  700

seq1  CCTATGGTTGTGTACCAGCATGCCCGACTCTCTCATAAACACCATCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTTGTGTACCAGCATGCCCGACTCTCTCATAAACACCATCTCTG  750

seq1  CTTCATGGTTATTTGCTCTGAATTTTACTTCTCTGCTGAAGCTATGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGTTATTTGCTCTGAATTTTACTTCTCTGCTGAAGCTATGAATT  800

seq1  CCAGTTTGACCAGATTCGAGGTCCCTGTGGGGAAAGTGACCTCTCCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGACCAGATTCGAGGTCCCTGTGGGGAAAGTGACCTCTCCAGGC  850

seq1  TGTGGTGGTCAAGGGAGTAGCCTGGGCTATTGTCATGAAATGGCACCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGTCAAGGGAGTAGCCTGGGCTATTGTCATGAAATGGCACCCCT  900

seq1  ACCCCCAAAGGAAAAAGATCCCAGACAACCTCCCAGTAAGCATCTTGACT  950
      ||| ||||| |||||||||||||||| |||||||||||||||||||||||
seq2  ACCTCCAAA-GAAAAAGATCCCAGAC-ACCTCCCAGTAAGCATCTTGACT  948

seq1  TCTCACCTTCACTTCCTCTCGTCCTGTAAACTGATTTTTTTTCCTACAGT  1000
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TCTCACCTTCACTTCCTCTCGT-CTGTAAACTGATTTTTTTT-CTACAGT  996

seq1  CGTTATTCTGCTTTCCCAAGTTAAGTTATATAAAAGGTACGCTC-AGGCT  1049
      ||||||||||||||||||||||||| ||||||||  | |||||| |||||
seq2  CGTTATTCTGCTTTCCCAAGTTAAG-TATATAAA--GGACGCTCTAGGCT  1043

seq1  GGAGCGATGGCTCAGCAGTTGCTCACAACTGTCTGTAGTTCCAATATCT-  1098
      | || ||||||||  ||  |||||||||||||||| | |||||| |||| 
seq2  GCAG-GATGGCTC--CACGTGCTCACAACTGTCTGGATTTCCAA-ATCTG  1089

seq1  GATATCATTACACA  1112
      |||||| |||||||
seq2  GATATCCTTACACA  1103