BAC Information

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BAC

Clone NameB6Ng01-045O07
Chromosome7 (Build37)
Map Location 24,068,162 - 24,069,267
singlet/doubletsinglet
Overlap geneEG628664
Upstream geneLOC100043626, LOC100043043, LOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088
Downstream geneNlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045O07.bB6Ng01-045O07.g
ACCDH871218DH871219
length1,1651,105
definitionDH871218|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O07, 5' end.DH871219|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagattctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcaattcga
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttctttcactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccgagatattttatattat
ttgcgcctattgagaggtgtttgtttccctattttcattctcagcccgtt
tattccttgtgtaagaaaacgcatggacttgcttgagtgaattataatct
cacctactctccgaaccgttttcacgctgagaggttccctcggggggagt
tttagggccgtgatacatctattcatcgccagaggagattgtgacttcct
cctcctacatatgag
gaattcagagtctgcagagatcagtaaagagtggttgatcccctcagatt
agggatacatatagttgtgagctgccatatgagtgctaggaatcgaatct
tgtttctctcctagaacagcaagtgctcttaactatggagacatgtctcc
tggatttttaattttgtctgtttatttacttatttattcactttatatcc
caattgacgccccctccaactgcccccctctcctcctagttccctatact
cctctctttcacctctgaaaaaatggaagcccctcctgggtaccaaccca
cccaggcacctcaagttactgtagcactaggcacatcctctcccactgag
gccagacaaagcagaccagttagagtaacaggatccacaggcaggcagca
gagtcagactaagccctcacagacaaagctgcacatctgctacatatgtg
taggggtctaggtccagcccttgtatgctctttggttgatggctcgtttc
ttggaaccataaggatagttgactctgatggtcttctgtggagtccctgc
cccctccaggttccccaatccttcccccaactcttccagaagacttcctg
ggcttggtctcatgtttggctacgggtctctacgtctgtttcagtcagct
gctgggtggagcccctcagaggacaattattctagggttgtgactgtgaa
tccatgctgacagatacaaacaacctaaggctccaagataagaaggcagg
cctacaacgtgtcccattgatcgtctgaggacagctcagcacaccgcccc
accctaaactgcaggggttgcttctgcattcatttatgtcagtctcacac
ggggtacctatttatccaggcccgcaatgacaaatatagctgtcacagtg
tcttcacatgttctatcattgtgacaggctttgactaacaatgagtatca
agcctcacaatgtggccctgtgaatctactcccccatgcagtcaccagtc
gtagctgtttctttccatccatacacaaatcctttgatttgtgggctgga
ctgacacttcatcaaagtagatcacagtgttctccagagagctctaggtg
aacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24068162_24069267
seq2: B6Ng01-045O07.g_70_1174 (reverse)

seq1  TTGTTCACCTAGACTTCT-TGGAGACCACTGTGAACTCAACTTTGATGAA  49
      |||||||||||||  ||| |||||| ||||||||  || |||||||||||
seq2  TTGTTCACCTAGAGCTCTCTGGAGAACACTGTGA--TCTACTTTGATGAA  48

seq1  CGTG-CAGT-CAG-CCACATATCCAAGGGATCTGTGTATGGATGG-AAGA  95
       ||| |||| ||| ||||| || ||| |||| ||||||||||||| ||||
seq2  -GTGTCAGTCCAGCCCACAAAT-CAAAGGATTTGTGTATGGATGGAAAGA  96

seq1  AACAGCTACGACT-GTGACTGCAT-GGGGAGTAGATTCACAGGGCCACAT  143
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  AACAGCTACGACTGGTGACTGCATGGGGGAGTAGATTCACAGGGCCACAT  146

seq1  TGTGAGGCTTTGATACCTCATTGTTAGTCAAAGCCTTGTCACAATGATAG  193
      |||||||| |||||| ||||||||||||||||||| ||||||||||||||
seq2  TGTGAGGC-TTGATA-CTCATTGTTAGTCAAAGCC-TGTCACAATGATAG  193

seq1  AACATGTGAAGACACTGTTGACAGCTATATTTGTCATTGCGGGCCTGGAT  243
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACATGTGAAGACACTG-TGACAGCTATATTTGTCATTGCGGGCCTGGAT  242

seq1  AAATAGGTACCCCGTGTGAGACTGACATAAATGAATGCAGAAGCAACCCC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTACCCCGTGTGAGACTGACATAAATGAATGCAGAAGCAACCCC  292

seq1  TGCAGTTTAGGGTGGGGCGGTGTGCTGAGCTGTCCTCAGACGATCAATGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTAGGGTGGGGCGGTGTGCTGAGCTGTCCTCAGACGATCAATGG  342

seq1  GACACGTTGTAGGCCTGCCTTCTTATCTTGGAGCCTTAGGTTGTTTGTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTTGTAGGCCTGCCTTCTTATCTTGGAGCCTTAGGTTGTTTGTAT  392

seq1  CTGTCAGCATGGATTCACAGTCACAACCCTAGAATAATTGTCCTCTGAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCATGGATTCACAGTCACAACCCTAGAATAATTGTCCTCTGAGG  442

seq1  GGCTCCACCCAGCAGCTGACTGAAACAGACGTAGAGACCCGTAGCCAAAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCACCCAGCAGCTGACTGAAACAGACGTAGAGACCCGTAGCCAAAC  492

seq1  ATGAGACCAAGCCCAGGAAGTCTTCTGGAAGAGTTGGGGGAAGGATTGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCAAGCCCAGGAAGTCTTCTGGAAGAGTTGGGGGAAGGATTGGG  542

seq1  GAACCTGGAGGGGGCAGGGACTCCACAGAAGACCATCAGAGTCAACTATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGGGGGCAGGGACTCCACAGAAGACCATCAGAGTCAACTATC  592

seq1  CTTATGGTTCCAAGAAACGAGCCATCAACCAAAGAGCATACAAGGGCTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTTCCAAGAAACGAGCCATCAACCAAAGAGCATACAAGGGCTGG  642

seq1  ACCTAGACCCCTACACATATGTAGCAGATGTGCAGCTTTGTCTGTGAGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGACCCCTACACATATGTAGCAGATGTGCAGCTTTGTCTGTGAGGG  692

seq1  CTTAGTCTGACTCTGCTGCCTGCCTGTGGATCCTGTTACTCTAACTGGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGACTCTGCTGCCTGCCTGTGGATCCTGTTACTCTAACTGGTC  742

seq1  TGCTTTGTCTGGCCTCAGTGGGAGAGGATGTGCCTAGTGCTACAGTAACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTCTGGCCTCAGTGGGAGAGGATGTGCCTAGTGCTACAGTAACT  792

seq1  TGAGGTGCCTGGGTGGGTTGGTACCCAGGAGGGGCTTCCATTTTTTCAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGCCTGGGTGGGTTGGTACCCAGGAGGGGCTTCCATTTTTTCAGA  842

seq1  GGTGAAAGAGAGGAGTATAGGGAACTAGGAGGAGAGGGGGGCAGTTGGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGAGAGGAGTATAGGGAACTAGGAGGAGAGGGGGGCAGTTGGAG  892

seq1  GGGGCGTCAATTGGGATATAAAGTGAATAAATAAGTAAATAAACAGACAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTCAATTGGGATATAAAGTGAATAAATAAGTAAATAAACAGACAA  942

seq1  AATTAAAAATCCAGGAGACATGTCTCCATAGTTAAGAGCACTTGCTGTTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATCCAGGAGACATGTCTCCATAGTTAAGAGCACTTGCTGTTC  992

seq1  TAGGAGAGAAACAAGATTCGATTCCTAGCACTCATATGGCAGCTCACAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGAAACAAGATTCGATTCCTAGCACTCATATGGCAGCTCACAAC  1042

seq1  TATATGTATCCCTAATCTGAGGGGATCAACCACTCTTTACTGATCTCTGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATCCCTAATCTGAGGGGATCAACCACTCTTTACTGATCTCTGC  1092

seq1  AGACTCTGAATTC  1106
      |||||||||||||
seq2  AGACTCTGAATTC  1105