BAC Information

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BAC

Clone NameB6Ng01-046B05
Chromosome17 (Build37)7 (Build37)
Map Location 35,840,458 - 35,840,61819,303,998 - 19,305,020
singlet/doubletsingletsinglet
Overlap geneDdr1
Upstream geneTnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4
Downstream geneLOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046B05.bB6Ng01-046B05.g
ACCDH871349DH871350
length1661,012
definitionDH871349|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B05, 5' end.DH871350|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,840,458 - 35,840,618)(19,303,998 - 19,305,020)
sequence
tttctctctctctctctcttctctttctctctctctctctctctccctct
tcttctccctctcctccctctctccctccccctctcctccctctcctccc
tctcctccctctcctccctctcctccctctcctccctctcctccctctcc
tccctctcctccctct
gaattcatcctcagctctcacagggtagatggagatacaggctcctgcag
gatcttctttgccatgcactccacacaggtgtgtgttatgcacccacagt
gtgcacagtgagacacaagccttccaaaacttgtgcatccagtacagaat
tatgaaatcacacttgaaagtgatgattgccatttgttccaaacatggga
ctatgtagataaattcatggacatatccttcttccttttttccttctttc
cttctttacttcttttcatcttttcttcttttcttccttcttttcttcat
tccttcacccctccctccctcccttcttttcttccttccttccttcctgc
tttctttgttttttttatcttacttccttttaacccccattattttctga
gatattgtcaggaactgaacattctaaaaaaataattctaatcattgtcc
tcacaaagtccttgtctagaggactggaagtcagagtatccaggggacaa
agtcactggcttaatggaaccataaatagaatggaaaacaattcagaaag
tgagaactgtttcgaggaggaggttatagggccacttctcctcacactag
gcatcttttatataaagagtgatatggggacacctgagtagaggattcca
cagagcagaaacaacaccatgtgagtctctgagtgcatggaggtcatgat
gctcacctccattcagggcacagccctacccactggaataagctgaggga
tgctcacagctgctcagattggtggcttctctctcttcccttctagcctc
cctcttaacctgctggctcttgcccatcactgccggagtcaccatcgaat
ccgtaccacccaaattggttgaagagaaatgttcttctacgagtggacat
ctgccagagatcttcgagtctttgtctggtatagagggtgacagacatga
gcctcggattgcattgtattcactgactatagcccaagtgtgacagacta
gcacagttgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35840458_35840618
seq2: B6Ng01-046B05.b_66_202 (reverse)

seq1  AGGAAGGGAGGGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAG  50
      ||||   |||||| |||||||||   |||||||||   |||||||||   
seq2  AGGA---GAGGGA-GGAGAGGGA---GGAGAGGGA---GGAGAGGGA---  37

seq1  GGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGG  100
      |||||||||   |||||||||   |||||||||   |||||||| |||||
seq2  GGAGAGGGA---GGAGAGGGA---GGAGAGGGA---GGAGAGGGGGAGGG  78

seq1  AGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAG  150
      |||| | || ||||||||||| | ||||||||||||||||||||||||| 
seq2  AGAGAGGGA-GGAGAGGGAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAA  127

seq1  AGAGAGAGAGA  161
      ||||| |||||
seq2  AGAGA-AGAGA  137

seq1: chr7_19303998_19305020
seq2: B6Ng01-046B05.g_66_1077

seq1  GAATTCATCCTCAGCTCTCACAGGGTAGATGGAGATACAGGCTCCTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCAGCTCTCACAGGGTAGATGGAGATACAGGCTCCTGCAG  50

seq1  GATCTTCTTTGCCATGCACTCCACACAGGTGTGTGTTATGCACCCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTTTGCCATGCACTCCACACAGGTGTGTGTTATGCACCCACAGT  100

seq1  GTGCACAGTGAGACACAAGCCTTCCAAAACTTGTGCATCCAGTACAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGTGAGACACAAGCCTTCCAAAACTTGTGCATCCAGTACAGAAT  150

seq1  TATGAAATCACACTTGAAAGTGATGATTGCCATTTGTTCCAAACATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATCACACTTGAAAGTGATGATTGCCATTTGTTCCAAACATGGGA  200

seq1  CTATGTAGATAAATTCATGGACATATCCTTCTTCCTTTTTTCCTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGATAAATTCATGGACATATCCTTCTTCCTTTTTTCCTTCTTTC  250

seq1  CTTCTTTACTTCTTTTCATCTTTTCTTCTTTTCTTCCTTCTTTTCTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTACTTCTTTTCATCTTTTCTTCTTTTCTTCCTTCTTTTCTTCAT  300

seq1  TCCTTCACCCCTCCCTCCCTCCCTTCTTTTCTTCCTTCCTTCCTTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACCCCTCCCTCCCTCCCTTCTTTTCTTCCTTCCTTCCTTCCTGC  350

seq1  TTTCTTTGTTTTTTTTATCTTACTTCCTTTTAACCCCCATTATTTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTTTTTTTATCTTACTTCCTTTTAACCCCCATTATTTTCTGA  400

seq1  GATATTGTCAGGAACTGAACATTCTAAAAAAATAATTCTAATCATTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTCAGGAACTGAACATTCTAAAAAAATAATTCTAATCATTGTCC  450

seq1  TCACAAAGTCCTTGTCTAGAGGACTGGAAGTCAGAGTATCCAGGGGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGTCCTTGTCTAGAGGACTGGAAGTCAGAGTATCCAGGGGACAA  500

seq1  AGTCACTGGCTTAATGGAACCATAAATAGAATGGAAAACAATTCAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGGCTTAATGGAACCATAAATAGAATGGAAAACAATTCAGAAAG  550

seq1  TGAGAACTGTTTCGAGGAGGAGGTTATAGGGCCACTTCTCCTCACACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTGTTTCGAGGAGGAGGTTATAGGGCCACTTCTCCTCACACTAG  600

seq1  GCATCTTTTATATAAAGAGTGATATGGGGACACCTGAGTAGAGGATTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTTATATAAAGAGTGATATGGGGACACCTGAGTAGAGGATTCCA  650

seq1  CAGAGCAGAAACAACACCATGTGAGTCTCTGAGTGCATGGAGGTCATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGAAACAACACCATGTGAGTCTCTGAGTGCATGGAGGTCATGAT  700

seq1  GCTCACCTCCATTCAGGGCACAGCCCTACCCACTGGAATAAGCTGAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTCCATTCAGGGCACAGCCCTACCCACTGGAATAAGCTGAGGGA  750

seq1  TGCTCACAGCTGCTCAGGATTGGTGGCTTCTCTCTCTTCCCTTCTAGCCT  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTCACAGCTGCTCA-GATTGGTGGCTTCTCTCTCTTCCCTTCTAGCCT  799

seq1  CCCTCTTAACCTGCTGGCTCTTGCCCATCACTGCCGGAGTCACCATCGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTAACCTGCTGGCTCTTGCCCATCACTGCCGGAGTCACCATCGAA  849

seq1  TCCGTACCACCCAAATTGGTTGAAGGAGAAAATGTTCTTCTACGAGTGGA  900
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TCCGTACCACCCAAATTGGTTGAA-GAG-AAATGTTCTTCTACGAGTGGA  897

seq1  CAATCTGCCAGAGAATCTTCGAGTCTTTGTCTGGTATAGAGGGGTGACAG  950
      | ||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  C-ATCTGCCAGAG-ATCTTCGAGTCTTTGTCTGGTATAGA-GGGTGACAG  944

seq1  ACATGAGCCTCGGAATTGCATTGTATTCACTTGACTATAGCACAAGTGTG  1000
      ||||||||||||| |||||||||||||||| |||||||||| ||||||||
seq2  ACATGAGCCTCGG-ATTGCATTGTATTCAC-TGACTATAGCCCAAGTGTG  992

seq1  ACAGGACCTAAGCACAGTGGTAG  1023
      ||| |||   |||||||| ||||
seq2  ACA-GAC--TAGCACAGTTGTAG  1012