BAC Information

Click to search

BAC

Clone NameB6Ng01-049B03
Chromosome7 (Build37)
Map Location 5,414,937 - 5,415,921
singlet/doubletsinglet
Overlap geneEG630071
Upstream geneEps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10
Downstream geneEG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049B03.bB6Ng01-049B03.g
ACCDH873438DH873439
length9731,169
definitionDH873438|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B03, 5' end.DH873439|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaataataacatgaatttttcattactaattaatttttagaagg
tagggtgacgttttgttttattggaaataaagaacaaagcatggcatatt
tactgggtcttgttgagcctttaaaactcaatcttcaccatgtaaattaa
ctgtggatatgtgaagaaatgtatgatttcagatagagttggattactta
tacttgggatttgatctgtttatagattctcaagataatggaagcacagg
tcttgtttagatattcttatctatcacttctgtggcatagtccacactac
ttgatctgtggatctcagtgactgtaaacatgagactgcatctgcatgac
ttggactgtgtaatacagtgttccctatgtcctcagtagctccagatttg
ctagtactggatgtctcactacgaatctgattcaatccattgacatcatt
tctaactgtggtcacataatcagattgttgaaactttccaagaaccaaat
ttgaaaaaaaaatggggggaggtttccttccatggattcaaaacatgtgt
gatacaatggagcctaagaatgaattatcctcctaagtatttacctacaa
gtatttattccatgggctgtggataccagttgtggaacccaagggaagaa
agtatttaaatttcttccagggctcatgagaaacctgaaaataaaatgag
tcatgaatatgcaataaacctcacctttgcacaaagaaataaaagctggt
agaaatctgatgtgctgatatgcatggcacttcacatccacactgcccag
gtttaaggcaggaaaaagtgtcattttcatgggagtcttcttcctcctta
tattacacttctcatggccaatttcattgatccaaggtgctttgagataa
tttggatgaatactgatgatctttgggatatctgtgctttcatccttgca
gcagtcagacaccactgaaagat
gaattctttgtttatctctgtgccccatttttgaaaaggtttatttgatt
ttctggtgtccagcttcttgagttttatatatatattggatattagtccc
ctatctgatttaggattggtaaagatcttttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttacagaagctttgcaatttta
ttaggtcccatttgacaattcttgatttacagcagaagccattgctgttc
tattcaggaattttccccctgtgccgatatatttgaggctttccccactt
tctcctctataattttcagtgttttatgtggagttcctagatccacttag
acttgaccttagtacaaggagataagaatggatcaatgcatattcttcta
catgataatctccagttgtgccagcaccatttgttgaaaatgctgtcttt
cttccactggatggttttagctcccttgtcaaagatcaagtgaccgtagg
tgtgtgggttcatttctgggtcttcaattctattccatttgtctacctgt
ttgtctgtatatcaggaccaagcagtttttatcacaatttctctgtagta
catctttaggtcaggcatggtgattccaccagagattctcttatccttga
gaagagtttttgctatcctaggtttttgttattccagatgaatttgcaaa
ttatcctttctaattcgttgaagaattgagttggaattttaatggggatt
ttcattgaatctctagattgctttccccaagatacccatttttactatat
tgatccagccaattcatgagatggaagatctttccatctttctgagatct
tctttgatttatatgtcagagacttgaagttcttatcatacagatatttc
acttccttagtttgatcacaccagtattttatattgcttgtgatatgtga
ggtgttgtttcctattctttctcatctgtatctttgtgtagagaaagaca
tttattccttgatacttttatacagctacttcctgagctgttatcagtta
gagtcttggggaatatacgtcacttagaactactatcatcgcaatggata
tttgacatctctcatcattgatccagatcattgtgtcaatgatccgcgga
gatacgactcaattgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5414937_5415921
seq2: B6Ng01-049B03.b_44_1013 (reverse)

seq1  TTTCAGTGGGTGTCTGAACTGCTGCAAGGATGAAAGCACAAGATAATCCC  50
      ||||||| |||||||| |||||||||||||||||||||| |||| |||||
seq2  TTTCAGT-GGTGTCTG-ACTGCTGCAAGGATGAAAGCAC-AGAT-ATCCC  46

seq1  AAAGATTCATCAGTTATTTCATCCAAATTTATTCTCCAAAAGCACCTTGG  100
      ||||| ||||||||   ||||||||||||   ||||  ||||||||||||
seq2  AAAGA-TCATCAGT--ATTCATCCAAATT--ATCTC--AAAGCACCTTGG  89

seq1  ATCAATGAAATTGGCCATGAGAAGTGTAATATTAAGGAGGAAGAAGACTC  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCAATGAAATTGGCCATGAGAAGTGTAATA-TAAGGAGGAAGAAGACTC  138

seq1  CCATGAAAATGAACATCTTTTTCCTGCCTTAAACCTGGGCAGTGTGGATT  200
      ||||||||||| ||| |||||||||||||||||||||||||||||||| |
seq2  CCATGAAAATG-ACA-CTTTTTCCTGCCTTAAACCTGGGCAGTGTGGA-T  185

seq1  GTGAAGTGCCATGCATATCAGCACATCAGATTTCTACCAGCTTTTATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGCCATGCATATCAGCACATCAGATTTCTACCAGCTTTTATTTC  235

seq1  TTTGTGCAAAGGTGAGGTTTATTGCATATTCATGACTCATTTTATTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAAAGGTGAGGTTTATTGCATATTCATGACTCATTTTATTTTCA  285

seq1  GGTTTCTCCTGAGCCCTGGAAGAAATTTAAATACTTTCTTCCCTTGGGTT  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCATGAGCCCTGGAAGAAATTTAAATACTTTCTTCCCTTGGGTT  335

seq1  CCACAACTGGTATCCACAGCCCATGGAATAAATACTTGTAGGTAAATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACTGGTATCCACAGCCCATGGAATAAATACTTGTAGGTAAATACT  385

seq1  TAGGAGGATAATTCATTCTTAGGCTCCATTGTATCACACATGTTTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGATAATTCATTCTTAGGCTCCATTGTATCACACATGTTTTGAAT  435

seq1  CCATGGAAGGAAACCTCCCCCCATTTTTTTTTCAAATTTGGTTCTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAGGAAACCTCCCCCCATTTTTTTTTCAAATTTGGTTCTTGGAA  485

seq1  AGTTTCAACAATCTGATTATGTGACCACAGTTAGAAATGATGTCAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAACAATCTGATTATGTGACCACAGTTAGAAATGATGTCAATGGA  535

seq1  TTGAATCAGATTCGTAGTGAGACATCCAGTACTAGCAAATCTGGAGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCAGATTCGTAGTGAGACATCCAGTACTAGCAAATCTGGAGCTAC  585

seq1  TGAGGACATAGGGAACACTGTATTACACAGTCCAAGTCATGCAGATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACATAGGGAACACTGTATTACACAGTCCAAGTCATGCAGATGCAG  635

seq1  TCTCATGTTTACAGTCACTGAGATCCACAGATCAAGTAGTGTGGACTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTTTACAGTCACTGAGATCCACAGATCAAGTAGTGTGGACTATG  685

seq1  CCACAGAAGTGATAGATAAGAATATCTAAACAAGACCTGTGCTTCCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAGTGATAGATAAGAATATCTAAACAAGACCTGTGCTTCCATTA  735

seq1  TCTTGAGAATCTATAAACAGATCAAATCCCAAGTATAAGTAATCCAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGAATCTATAAACAGATCAAATCCCAAGTATAAGTAATCCAACTC  785

seq1  TATCTGAAATCATACATTTCTTCACATATCCACAGTTAATTTACATGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAATCATACATTTCTTCACATATCCACAGTTAATTTACATGGTG  835

seq1  AAGATTGAGTTTTAAAGGCTCAACAAGACCCAGTAAATATGCCATGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAGTTTTAAAGGCTCAACAAGACCCAGTAAATATGCCATGCTTT  885

seq1  GTTCTTTATTTCCAATAAAACAAAACGTCACCCTACCTTCTAAAAATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATTTCCAATAAAACAAAACGTCACCCTACCTTCTAAAAATTAA  935

seq1  TTAGTAATGAAAAATTCATGTTATTATTTGAATTC  985
      |||||||||||||||||||||||||||||||||||
seq2  TTAGTAATGAAAAATTCATGTTATTATTTGAATTC  970