BAC Information

Click to search

BAC

Clone NameB6Ng01-049B04
Chromosome7 (Build37)
Map Location 117,733,890 - 117,895,410
singlet/doubletdoublet
Overlap geneSbf2, Adm
Upstream geneSt5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, LOC668246
Downstream geneB430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049B04.bB6Ng01-049B04.g
ACCDH873440DH873441
length922712
definitionDH873440|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B04, 5' end.DH873441|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,733,890 - 117,734,812)(117,894,701 - 117,895,410)
sequence
gaattcattattaataattatctataaatatagaatagctaatcctgtca
ctgtggtaaaatcactttccaccctgtatctttagagaggctaaatgttt
accattggaatggagcataatgaaagcttgtagaatacttgataatgatc
tacttcttaacccaagagatgactgcacagtgtctgcattttgacatcat
ttctgggctgtgcagtttgtatacttttcgctatacatgctatcatttaa
taaaggttcctaaaagatctacatttattgcaacagaacttccaaaacaa
acacagtcccaagaaaaagacaaagcaactgggcattagtgtcatgtttt
taactggtttgcattaataaaatttttatgcaatgaacaagaaaaacata
tgcaactagtacatgcaataactaaaagattaagtttttactccgtttag
tctaattctcataaaagagaaaccaaagcaaacagaagtagaaaggctcc
actttcccaacatccgccagggcacatttgtccaaagacaggtgccttcc
ttttttctgttatttttgctaccaagcttcagtccagactctggtctcct
gcaccctattctcttgtgtgcctcttctctctgacaagttactatggctg
tccctggccgtttgtagatcctttcaatatctacctttaccagctcacag
ataatacttggtcatgttttaggtgttattttcttcaaacattttttaaa
gtatcagaaaattaattctaaaaactacactctttgtttctaaaatagac
atctctcttgtgcatgtcatgctgggaactgaatccaggaccttgtcata
ccttgcatataaacatatatatatatacatatatatgtatatgtatatat
gtgtgtatatatgtagatatat
gaattcagtcagttctcagcatctgtgctgggtggcttacaaaggctggt
aattccacctccagagatccaaaattctctcttggctttagcagctgctg
cattcttgcgaacacacacacacacacacacacacacacacacacacaca
cacactaaaaatctttttttaaaggaaaaaaaaatactacagtctaggca
gtgtgcagaccataactcaattaatagagtgttttcctgagatgcacaaa
gcctgggttctgttcctagcaccgcataaaattgggtgtagtgctgcata
cctaaaatctcagcacttcggaggtgatggcaagacttgtccaaagtcat
cctcggctacatagaaagtttgaacgtggtatacatatgtgggaatctat
ctgaaaataaaatggcaggctatccactgtcaggcactcatagcaacgta
tagacaacagcgtaggaacggcatgtaaacacttagaaaggaaagcctgg
ggtgtccctggagccactggcttgtaacagttctaaggtacctatgacag
acattacaaagcaggcagtctcttcatcacggtttgctgggatccttgcc
tgcccccgcccccctttctgagcagcttcctcctggaccttccttccctt
ggccatgtggaaaatggaaacagggaaaacaaaggactctgggaggtggg
gggtgggaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_117733890_117734812
seq2: B6Ng01-049B04.b_42_963

seq1  GAATTCATTATTAATAATTATCTATAAATATAGAATAGCTAATCCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTAATAATTATCTATAAATATAGAATAGCTAATCCTGTCA  50

seq1  CTGTGGTAAAATCACTTTCCACCCTGTATCTTTAGAGAGGCTAAATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTAAAATCACTTTCCACCCTGTATCTTTAGAGAGGCTAAATGTTT  100

seq1  ACCATTGGAATGGAGCATAATGAAAGCTTGTAGAATACTTGATAATGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGGAATGGAGCATAATGAAAGCTTGTAGAATACTTGATAATGATC  150

seq1  TACTTCTTAACCCAAGAGATGACTGCACAGTGTCTGCATTTTGACATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTAACCCAAGAGATGACTGCACAGTGTCTGCATTTTGACATCAT  200

seq1  TTCTGGGCTGTGCAGTTTGTATACTTTTCGCTATACATGCTATCATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTGTGCAGTTTGTATACTTTTCGCTATACATGCTATCATTTAA  250

seq1  TAAAGGTTCCTAAAAGATCTACATTTATTGCAACAGAACTTCCAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTCCTAAAAGATCTACATTTATTGCAACAGAACTTCCAAAACAA  300

seq1  ACACAGTCCCAAGAAAAAGACAAAGCAACTGGGCATTAGTGTCATGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCCCAAGAAAAAGACAAAGCAACTGGGCATTAGTGTCATGTTTT  350

seq1  TAACTGGTTTGCATTAATAAAATTTTTATGCAATGAACAAGAAAAACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGTTTGCATTAATAAAATTTTTATGCAATGAACAAGAAAAACATA  400

seq1  TGCAACTAGTACATGCAATAACTAAAAGATTAAGTTTTTACTCCGTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTAGTACATGCAATAACTAAAAGATTAAGTTTTTACTCCGTTTAG  450

seq1  TCTAATTCTCATAAAAGAGAAACCAAAGCAAACAGAAGTAGAAAGGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCTCATAAAAGAGAAACCAAAGCAAACAGAAGTAGAAAGGCTCC  500

seq1  ACTTTCCCAACATCCGCCAGGGCACATTTGTCCAAAGACAGGTGCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCAACATCCGCCAGGGCACATTTGTCCAAAGACAGGTGCCTTCC  550

seq1  TTTTTTCTGTTATTTTTGCTACCAAGCTTCAGTCCAGACTCTGGTCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGTTATTTTTGCTACCAAGCTTCAGTCCAGACTCTGGTCTCCT  600

seq1  GCACCCTATTCTCTTGTGTGCCTCTTCTCTCTGACAAGTTACTATGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTATTCTCTTGTGTGCCTCTTCTCTCTGACAAGTTACTATGGCTG  650

seq1  TCCCTGGCCGTTTGTAGATCCTTTCAATATCTACCTTTACCAGCTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCCGTTTGTAGATCCTTTCAATATCTACCTTTACCAGCTCACAG  700

seq1  ATAATACTTGGTCATGTTTTAGGTGTTATTTTCTTCAAACATTTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTTGGTCATGTTTTAGGTGTTATTTTCTTCAAACATTTTTTAAA  750

seq1  GTATCAGAAAATTAATTCTAAAAACTACACTCTTTGTTTCTAAAATAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAAAATTAATTCTAAAAACTACACTCTTTGTTTCTAAAATAGAC  800

seq1  ATCTCTCTTGTGCATGTCATGCTGGGAACTGAATCCAGGACCTTGTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTTGTGCATGTCATGCTGGGAACTGAATCCAGGACCTTGTCATA  850

seq1  CCTTGCAATATAAACATATATATATATACATATATATGTATATGTATATA  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGC-ATATAAACATATATATATATACATATATATGTATATGTATATA  899

seq1  TGTGTGTATATATGTATATATAT  923
      |||||||||||||||| ||||||
seq2  TGTGTGTATATATGTAGATATAT  922

seq1: chr7_117894701_117895410
seq2: B6Ng01-049B04.g_69_780 (reverse)

seq1  CACCTCC--ACCCCCACCTCCCAGAGTCCTTTGTTTTCCCTGTTTCCATT  48
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCACCCCCCACCTCCCAGAGTCCTTTGTTTTCCCTGTTTCCATT  50

seq1  TTCCACATGGCCAAGGGAAGGAAGGTCCAGGAGGAAGCTGCTCAGAAAGG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGGCCAAGGGAAGGAAGGTCCAGGAGGAAGCTGCTCAGAAAGG  100

seq1  GGGGCGGGGGCAGGCAAGGATCCCAGCAAACCGTGATGAAGAGACTGCCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGGGCAGGCAAGGATCCCAGCAAACCGTGATGAAGAGACTGCCT  150

seq1  GCTTTGTAATGTCTGTCATAGGTACCTTAGAACTGTTACAAGCCAGTGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAATGTCTGTCATAGGTACCTTAGAACTGTTACAAGCCAGTGGC  200

seq1  TCCAGGGACACCCCAGGCTTTCCTTTCTAAGTGTTTACATGCCGTTCCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGACACCCCAGGCTTTCCTTTCTAAGTGTTTACATGCCGTTCCTA  250

seq1  CGCTGTTGTCTATACGTTGCTATGAGTGCCTGACAGTGGATAGCCTGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTTGTCTATACGTTGCTATGAGTGCCTGACAGTGGATAGCCTGCCA  300

seq1  TTTTATTTTCAGATAGATTCCCACATATGTATACCACGTTCAAACTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCAGATAGATTCCCACATATGTATACCACGTTCAAACTTTCT  350

seq1  ATGTAGCCGAGGATGACTTTGGACAAGTCTTGCCATCACCTCCGAAGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCGAGGATGACTTTGGACAAGTCTTGCCATCACCTCCGAAGTGC  400

seq1  TGAGATTTTAGGTATGCAGCACTACACCCAATTTTATGCGGTGCTAGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTAGGTATGCAGCACTACACCCAATTTTATGCGGTGCTAGGAA  450

seq1  CAGAACCCAGGCTTTGTGCATCTCAGGAAAACACTCTATTAATTGAGTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCAGGCTTTGTGCATCTCAGGAAAACACTCTATTAATTGAGTTA  500

seq1  TGGTCTGCACACTGCCTAGACTGTAGTATTTTTTTTTCCTTTAAAAAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCACACTGCCTAGACTGTAGTATTTTTTTTTCCTTTAAAAAAAG  550

seq1  ATTTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  600

seq1  TTCGCAAGAATGCAGCAGCTGCTAAAGCCAAGAGAGAATTTTGGATCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAGAATGCAGCAGCTGCTAAAGCCAAGAGAGAATTTTGGATCTCT  650

seq1  GGAGGTGGAATTACCAGCCTTTGTAAGCCACCCAGCACAGATGCTGAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGAATTACCAGCCTTTGTAAGCCACCCAGCACAGATGCTGAGAA  700

seq1  CTGACTGAATTC  710
      ||||||||||||
seq2  CTGACTGAATTC  712