BAC Information

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BAC

Clone NameB6Ng01-049D07
Chromosome7 (Build37)
Map Location 79,464,192 - 79,615,316
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665535, Mctp2, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D07.bB6Ng01-049D07.g
ACCDH873535DH873536
length1,1151,123
definitionDH873535|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D07, 5' end.DH873536|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,614,199 - 79,615,316)(79,464,192 - 79,465,337)
sequence
gaattctgtctctgaaaacattcgggtttgtaaactgctttcttttgtct
tcaaagaggtagtggtcgacacgttgcctcattacttcctctctcaaaga
tgttttatgtgtggcaaactcaacttgtctggtcctactgggatgtagtc
cacagtggtcttcctttacagcctctgcatgtcggtgacactgtttgatc
atctgaacaagaagctgaacaaaaagcacaagtgtcctccagggcctctg
tagggagggaggaccatgattctctaccctatgagattccatggcctctg
ggaagttcagcacagactctcaagtgagatatctaccctaaacccagagt
acaacagtaagtagttttttaaacaaaaatggtattcccaggtgtaattt
aatgaagctagagactccttgattcaaacctgccacaaagtggtgagaga
gacaagaggaagaagcagacaagccagctaatggtccccaaataagttct
ccagatggagcacattttttggtctaccccaggctgtcatcaacatttca
acatttaacgtttcatttcctgctttcttcttgcctgtcacagaaattgg
actaaaattccctcttcaccaaaagtatcacgcacagttttgtactgttt
ttttttttcttcactgtgctctgaattgtggcatattaagtagatctcct
tggcagggcacaagctaatttgacagaaggtaagtgacttgtgacttgtc
acatactatcaatcaatagcttgcatctcctatcaaaaagtggccttggc
tgtttttaatcttatgttctatctcattcctataatccccagaacaaaaa
gagacaacacgcctggaaatacaaacaattttctaaagataaggttcact
tcaaaaagggaaattttaaacttgtaccccagtgttacccagggtgtcct
ccttcatttcatcacacttgagtgttcccttcatacagcaaatgcaggaa
atactgtctctagcatggcttcatgtacttcactgatctagcctctcaag
gaattgtgcaccaagttccagcatggtagaatgtccactggtagggaaaa
tgccagggaatgatc
gaattctctctgagcttagaaaagtcagcaggctctgcttggtctcccca
ccactgaactgcaaaatgtgctcgctgcaggttctaaaggaaaggaaact
cagaatacatcttctgggggacaggtggaccatgccatcagacaagagaa
ctggtaaggttgactgagctcaacccactgaatcaaagaattaagaaagg
taggattggggccactccctctctgccctcacctgatctgaaacacaaaa
ccatgaaatcccaaagataggaccatggcaatctgttaagcagctagcta
ccctggaattctccatgctaatgaggcatctagatagccccagtattcag
ccaatgagcttcccatcctgggcattccttctcggaaaaaggcatttaat
ctctggttcaccttgagtaaggtatatgcattcatattcgccatctaata
aagtagtttgattaagcatggagcatctcttcatcaaggattgccagggc
gggaggctttcatagtaaagagactttcctaaatctcctgggaaggactt
ctctctctcccaatccctccatcatctcagcactcactcagaaacaaacc
gagttccacccccatcccaggttctcacatccccttccagactggcacgt
gaatgccctgaagggaagcacagaccagagacccctgttcccgactccca
gcagtatgtcaatggtgcctgggtacacacgagactaggaaccatagcaa
acctctcggactccactgttgttcccaactgggaaacatggactgaggac
tgtgttttgcctcctctaagctgcgtgcaggcagtcctctggccacccca
gcaatgaaatgcatgcagcttagaaactttgcttttctgggattggcaca
ctgcacactatctgtgtctaagcaaataactattgctgctgttaatgtga
aagtgaccagcacagttccctttatcttattctggcaggatgggagtcca
gcttatagcatctgactgaactcatcatgtctattttggcattgatctag
gttcaacgacacaacacatttaaaatagtccaaggacaaccctggaagag
atatctgagtctaacttcagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_79614199_79615316
seq2: B6Ng01-049D07.b_44_1158 (reverse)

seq1  GATCATTTCCTTGCCATTCTCCCTA-CAGT-GACATTCTACATTGCTGGA  48
      ||||| |||| || |||| |||||| |||| ||||||||||  |||||| 
seq2  GATCA-TTCCCTGGCATTTTCCCTACCAGTGGACATTCTACCATGCTGG-  48

seq1  AACTTGGTGCACAATATCCTTGAGAGGCCTAAGATCAGTGAAGTACATGA  98
      ||||||||||||||| ||||||||||||   |||||||||||||||||||
seq2  AACTTGGTGCACAAT-TCCTTGAGAGGC--TAGATCAGTGAAGTACATGA  95

seq1  AGCCATTGCTAGAGAACAGTATTTCCTGCATTTGCTGTATGGAAGGGAAC  148
      ||||| |||||||| ||||||||||||||||||||||||| |||||||||
seq2  AGCCA-TGCTAGAG-ACAGTATTTCCTGCATTTGCTGTAT-GAAGGGAAC  142

seq1  ACTCAAGTGTGTGGAAATGAAGGAGGACACCCTGGGTAACACTGGGGTAC  198
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTGTGATGAAATGAAGGAGGACACCCTGGGTAACACTGGGGTAC  192

seq1  AAGTTTAAAATTT-CCTTTTTGAAGTGAACCTTATCTTTAG-AAATTGTT  246
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  AAGTTTAAAATTTCCCTTTTTGAAGTGAACCTTATCTTTAGAAAATTGTT  242

seq1  TGTATTTCCAGGCGTGTTGTCTCTTTTTG-TCTGGGGATTATAGGAATGA  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTATTTCCAGGCGTGTTGTCTCTTTTTGTTCTGGGGATTATAGGAATGA  292

seq1  GATAGAACATAAGATTAAAAACAGCCAAGGCCACTTTTTGATAGGAGATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACATAAGATTAAAAACAGCCAAGGCCACTTTTTGATAGGAGATG  342

seq1  CAAGCTATTGATTGATAGTATGTGACAAGTCACAAGTCACTTACCTTCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTATTGATTGATAGTATGTGACAAGTCACAAGTCACTTACCTTCTG  392

seq1  TCAAATTAGCTTGTGCCCTGCCAAGGAGATCTACTTAATATGCCACAATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAGCTTGTGCCCTGCCAAGGAGATCTACTTAATATGCCACAATT  442

seq1  CAGAGCACAGTGAAGAAAAAAAAAAACAGTACAAAACTGTGCGTGATACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACAGTGAAGAAAAAAAAAAACAGTACAAAACTGTGCGTGATACT  492

seq1  TTTGGTGAAGAGGGAATTTTAGTCCAATTTCTGTGACAGGCAAGAAGAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGAAGAGGGAATTTTAGTCCAATTTCTGTGACAGGCAAGAAGAAA  542

seq1  GCAGGAAATGAAACGTTAAATGTTGAAATGTTGATGACAGCCTGGGGTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAATGAAACGTTAAATGTTGAAATGTTGATGACAGCCTGGGGTAG  592

seq1  ACCAAAAAATGTGCTCCATCTGGAGAACTTATTTGGGGACCATTAGCTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAATGTGCTCCATCTGGAGAACTTATTTGGGGACCATTAGCTGG  642

seq1  CTTGTCTGCTTCTTCCTCTTGTCTCTCTCACCACTTTGTGGCAGGTTTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGCTTCTTCCTCTTGTCTCTCTCACCACTTTGTGGCAGGTTTGA  692

seq1  ATCAAGGAGTCTCTAGCTTCATTAAATTACACCTGGGAATACCATTTTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAGTCTCTAGCTTCATTAAATTACACCTGGGAATACCATTTTTG  742

seq1  TTTAAAAAACTACTTACTGTTGTACTCTGGGTTTAGGGTAGATATCTCAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAACTACTTACTGTTGTACTCTGGGTTTAGGGTAGATATCTCAC  792

seq1  TTGAGAGTCTGTGCTGAACTTCCCAGAGGCCATGGAATCTCATAGGGTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTCTGTGCTGAACTTCCCAGAGGCCATGGAATCTCATAGGGTAG  842

seq1  AGAATCATGGTCCTCCCTCCCTACAGAGGCCCTGGAGGACACTTGTGCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATGGTCCTCCCTCCCTACAGAGGCCCTGGAGGACACTTGTGCTT  892

seq1  TTTGTTCAGCTTCTTGTTCAGATGATCAAACAGTGTCACCGACATGCAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAGCTTCTTGTTCAGATGATCAAACAGTGTCACCGACATGCAGA  942

seq1  GGCTGTAAAGGAAGACCACTGTGGACTACATCCCAGTAGGACCAGACAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAAAGGAAGACCACTGTGGACTACATCCCAGTAGGACCAGACAAG  992

seq1  TTGAGTTTGCCACACATAAAACATCTTTGAGAGAGGAAGTAATGAGGCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTGCCACACATAAAACATCTTTGAGAGAGGAAGTAATGAGGCAA  1042

seq1  CGTGTCGACCACTACCTCTTTGAAGACAAAAGAAAGCAGTTTACAAACCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCGACCACTACCTCTTTGAAGACAAAAGAAAGCAGTTTACAAACCC  1092

seq1  GAATGTTTTCAGAGACAGAATTC  1118
      |||||||||||||||||||||||
seq2  GAATGTTTTCAGAGACAGAATTC  1115

seq1: chr7_79464192_79465337
seq2: B6Ng01-049D07.g_68_1190

seq1  GAATTCTCTCTGAGCTTAGAAAAGTCAGCAGGCTCTGCTTGGTCTCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGAGCTTAGAAAAGTCAGCAGGCTCTGCTTGGTCTCCCCA  50

seq1  CCACTGAACTGCAAAATGTGCTCGCTGCAGGTTCTAAAGGAAAGGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAACTGCAAAATGTGCTCGCTGCAGGTTCTAAAGGAAAGGAAACT  100

seq1  CAGAATACATCTTCTGGGGGACAGGTGGACCATGCCATCAGACAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACATCTTCTGGGGGACAGGTGGACCATGCCATCAGACAAGAGAA  150

seq1  CTGGTAAGGTTGACTGAGCTCAACCCACTGAATCAAAGAATTAAGAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGGTTGACTGAGCTCAACCCACTGAATCAAAGAATTAAGAAAGG  200

seq1  TAGGATTGGGGCCACTCCCTCTCTGCCCTCACCTGATCTGAAACACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTGGGGCCACTCCCTCTCTGCCCTCACCTGATCTGAAACACAAAA  250

seq1  CCATGAAATCCCAAAGATAGGACCATGGCAATCTGTTAAGCAGCTAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATCCCAAAGATAGGACCATGGCAATCTGTTAAGCAGCTAGCTA  300

seq1  CCCTGGAATTCTCCATGCTAATGAGGCATCTAGATAGCCCCAGTATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAATTCTCCATGCTAATGAGGCATCTAGATAGCCCCAGTATTCAG  350

seq1  CCAATGAGCTTCCCATCCTGGGCATTCCTTCTCGGAAAAAGGCATTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGCTTCCCATCCTGGGCATTCCTTCTCGGAAAAAGGCATTTAAT  400

seq1  CTCTGGTTCACCTTGAGTAAGGTATATGCATTCATATTCGCCATCTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTCACCTTGAGTAAGGTATATGCATTCATATTCGCCATCTAATA  450

seq1  AAGTAGTTTGATTAAGCATGGAGCATCTCTTCATCAAGGATTGCCAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTTGATTAAGCATGGAGCATCTCTTCATCAAGGATTGCCAGGGC  500

seq1  GGGAGGCTTTCATAGTAAAGAGACTTTCCTAAATCTCCTGGGAAGGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTTTCATAGTAAAGAGACTTTCCTAAATCTCCTGGGAAGGACTT  550

seq1  CTCTCTCTCCCAATCCCTCCATCATCTCAGCACTCACTCAGAAACAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCCCAATCCCTCCATCATCTCAGCACTCACTCAGAAACAAACC  600

seq1  GAGTTCCACCCCCATCCCAGGTTCTCACATCCCCTTCCAGACTGGCACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCACCCCCATCCCAGGTTCTCACATCCCCTTCCAGACTGGCACGT  650

seq1  GAATGCCCTGAAGGGAAGCACAGACCAGAGACCCCTGTTCCCGACTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCTGAAGGGAAGCACAGACCAGAGACCCCTGTTCCCGACTCCCA  700

seq1  GCAGTATGTCAATGGTGCCTGGGTACACACGAGACTAGGAACCATAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGTCAATGGTGCCTGGGTACACACGAGACTAGGAACCATAGCAA  750

seq1  ACCTCTCGGACTCCACTGTTGTTCCCAACTGGGAAACATGGACTGAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCGGACTCCACTGTTGTTCCCAACTGGGAAACATGGACTGAGGAC  800

seq1  TGTGTTTTGCCTCCTCTAAGCTGCGTGCAGGCAGTCCTCTGGCCACCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGCCTCCTCTAAGCTGCGTGCAGGCAGTCCTCTGGCCACCCCA  850

seq1  GCAATGAAATGCATGCAGCTTAGAAAACTTTGCTTTTCTGGGATTGGCAC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCAATGAAATGCATGCAGCTTAG-AAACTTTGCTTTTCTGGGATTGGCAC  899

seq1  ACTGCACACTATCTGTTGTCTAAGCAAATAACTATTGCTGCTGTTAAATG  950
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  ACTGCACACTATCTG-TGTCTAAGCAAATAACTATTGCTGCTGTT-AATG  947

seq1  TGAAAGTGAACCAGCACAGTTCCCTTTATCTTATTCTGGCCAGGAATGGG  1000
      |||||||| |||||||||||||||||||||||||||||| |||| |||||
seq2  TGAAAGTG-ACCAGCACAGTTCCCTTTATCTTATTCTGG-CAGG-ATGGG  994

seq1  AGTCCAAGCCTATAGGCATCTGACTGAACCTCAATCATGTCTATTATGGC  1050
      ||||| ||| |||| ||||||||||||| ||| |||||||||||| ||||
seq2  AGTCC-AGCTTATA-GCATCTGACTGAA-CTC-ATCATGTCTATTTTGGC  1040

seq1  ATTGATTCTAGGTTCAAACAGACAAACAAACAACA-ATTAAAAATAGTCC  1099
      ||||| |||||||||||   |||      |||||| ||| ||||||||||
seq2  ATTGA-TCTAGGTTCAA--CGAC------ACAACACATTTAAAATAGTCC  1081

seq1  AAAGAACAACACTAGGAAAGAGATATCTGAGTTCCTAACTTCAGTCT  1146
       ||| ||||| ||  | |||||||||||||||  |||||||||||||
seq2  -AAGGACAACCCT--GGAAGAGATATCTGAGT--CTAACTTCAGTCT  1123