BAC Information

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BAC

Clone NameB6Ng01-049L12
Chromosome7 (Build37)
Map Location 147,866,923 - 147,867,964
singlet/doubletsinglet
Overlap genenone
Upstream gene9330101J02Rik, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913
Downstream geneOlfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049L12.bB6Ng01-049L12.g
ACCDH873900DH873901
length7051,019
definitionDH873900|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L12, 5' end.DH873901|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcctaggcaaatggatggtcctggagggtatcatcct
gagtgaggtaacccaatcacaaaagaactcaaatgatatgtactcactga
tgagtggatattagcccagaaatttagaataaccaagatataagatacaa
tttggtaaacccattaaactgaagaagaacgaagaccaaaatgtggacac
tttgcaccttcttagaattgggaacaaaacacccatggaaggaggtacag
aaacaatgtttggagctgagacgaaaggatggaccatctagagactgcca
tatccggggatccatcccataatcagcttccaaacgctgacaccattgca
tgcaagattttactgaaaggaccctgatatggctgtctcttatgagacta
tgcaggggcctagcaaacacagaagtggatgctcacagtcagctattgga
tggatcacagggtccccaatggaggagctagagaaagtacccaaagagct
aaagggatccgcaatcctataggtggaacaacaatatgaactaaccagta
ccccagagctcttgtatctagatgcatatgtatcaaaagatggcctagtc
ggccatcactagaaagagaggcccattggtcatgcaaactttatatgccc
cagtactggggaacaccagggccaaaaagtgggagtgggtgggtaaggtg
tggag
gaattcaggtgacagatgactccaacaaaggtgcacactgggctgagcac
agactcttttttttgcaagcagcaggtcttgaccctgtgaagctctgtct
tcctttggatagaggccactgaccttcagaaatacctgtcatttctgaga
ccacaggtaggttcttgtcctggtgcctcatgggatagaaactcaaggag
aaagctcttaggatcaattaagaaaaattatgacttaatgacccaagctt
cctgcagacttgtgaggagcacaatggtcaggggagtcacatactgtggg
tactacctgcattggaactgttcccactctacagcctcattgtcaccaac
catgttcatgccccggtgttaccatgtcttgtatggaagttctcaccagg
atacaaattgtctaccctgtattctgctgagagtgtttcacctgaatcag
acatgcacacaatgggtctattctaagtatcttgtactgcctatttctct
cttcatctccctacagtcaagacattctgtatattgttatgaattgatgt
tccttcagcactaccattctgttttctacaatttcaaacatttaaaatat
ttattcagcccttaggctctctatacaagtagcatcatacagatagaaga
attcatgtttaggaatatgtatcaatttgtgtatacatatatgtatgcaa
taacaactagaatataaaaagtggccatgaatttggagaagagtgacaga
gggttatatagaaggtgtgcaaggagaaaggcagacataaaggatctaat
gaaagcataatctcaaaattattaaagataaaatattatttaacattttc
tgtgtcactagattatatagaaaacataataaaccatttaattacagttt
tagatgcaaatatttttcacacatgttttctgatcatggctctttcttta
cacttctccagatctctctacttcccaatcatgacatctctggctctcag
aaaacaaacagaagtgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_147866923_147867964
seq2: B6Ng01-049L12.g_66_1084 (reverse)

seq1  TTGCACTTCTGTTTGTTTTTCTGAAGAGCCAAGAAGGATGGTCATGGATT  50
      ||||||||||||||| ||||||| |||||| |||  ||| ||||| ||||
seq2  TTGCACTTCTGTTTG-TTTTCTG-AGAGCC-AGA--GAT-GTCAT-GATT  43

seq1  GGGGAAGGTAGAGAAGATCTGGGAGAAGTTGTAAAAGGAAAGAGCCATGA  100
      |||  | |||||| |||||| ||||||| ||||||  |||||||||||||
seq2  GGG--AAGTAGAG-AGATCT-GGAGAAG-TGTAAA--GAAAGAGCCATGA  86

seq1  TCAGAAAACATTGTGTGAAAAAATTATTTTGCATCTAAAACTTGTAATTA  150
      |||||||||| |||||||||||  || |||||||||||||| ||||||||
seq2  TCAGAAAACA-TGTGTGAAAAA--TA-TTTGCATCTAAAAC-TGTAATTA  131

seq1  AATTGGTTTATTTATGTTTTCTTATATAATCTAGTGACACAGAAAATGTT  200
      || ||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  AA-TGGTTTA-TTATGTTTTC-TATATAATCTAGTGACACAGAAAATGTT  178

seq1  AAATAATATTTTATCTTTAATAATTTTGAGATTATGCTTTCATTAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATTTTATCTTTAATAATTTTGAGATTATGCTTTCATTAGATCC  228

seq1  TTTATGTCCTGCCTTTCTCCTTGCACACCTTCTATATAACCCTCTGTCAC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGT-CTGCCTTTCTCCTTGCACACCTTCTATATAACCCTCTGTCAC  277

seq1  TCTTCTCCAAATTCATGGCCACTTTTTATATTCTAGTTGTTATTGCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCAAATTCATGGCCACTTTTTATATTCTAGTTGTTATTGCATAC  327

seq1  ATATATGTATACACAAATTGATACATATTCCTAAACATGAATTCTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATACACAAATTGATACATATTCCTAAACATGAATTCTTCTAT  377

seq1  CTGTATGATGCTACTTGTATAGAGAGCCTAAGGGCTGAATAAATATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGATGCTACTTGTATAGAGAGCCTAAGGGCTGAATAAATATTTTA  427

seq1  AATGTTTGAAATTGTAGAAAACAGAATGGTAGTGCTGAAGGAACATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGAAATTGTAGAAAACAGAATGGTAGTGCTGAAGGAACATCAAT  477

seq1  TCATAACAATATACAGAATGTCTTGACTGTAGGGAGATGAAGAGAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAATATACAGAATGTCTTGACTGTAGGGAGATGAAGAGAGAAAT  527

seq1  AGGCAGTACAAGATACTTAGAATAGACCCATTGTGTGCATGTCTGATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTACAAGATACTTAGAATAGACCCATTGTGTGCATGTCTGATTCA  577

seq1  GGTGAAACACTCTCAGCAGAATACAGGGTAGACAATTTGTATCCTGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACACTCTCAGCAGAATACAGGGTAGACAATTTGTATCCTGGTGA  627

seq1  GAACTTCCATACAAGACATGGTAACACCGGGGCATGAACATGGTTGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCATACAAGACATGGTAACACCGGGGCATGAACATGGTTGGTGA  677

seq1  CAATGAGGCTGTAGAGTGGGAACAGTTCCAATGCAGGTAGTACCCACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGCTGTAGAGTGGGAACAGTTCCAATGCAGGTAGTACCCACAGT  727

seq1  ATGTGACTCCCCTGACCATTGTGCTCCTCACAAGTCTGCAGGAAGCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTCCCCTGACCATTGTGCTCCTCACAAGTCTGCAGGAAGCTTGG  777

seq1  GTCATTAAGTCATAATTTTTCTTAATTGATCCTAAGAGCTTTCTCCTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAAGTCATAATTTTTCTTAATTGATCCTAAGAGCTTTCTCCTTGA  827

seq1  GTTTCTATCCCATGAGGCACCAGGACAAGAACCTACCTGTGGTCTCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATCCCATGAGGCACCAGGACAAGAACCTACCTGTGGTCTCAGAA  877

seq1  ATGACAGGTATTTCTGAAGGTCAGTGGCCTCTATCCAAAGGAAGACAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGTATTTCTGAAGGTCAGTGGCCTCTATCCAAAGGAAGACAGAG  927

seq1  CTTCACAGGGTCAAGACCTGCTGCTTGCAAAAAAAAGAGTCTGTGCTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGGGTCAAGACCTGCTGCTTGCAAAAAAAAGAGTCTGTGCTCAG  977

seq1  CCCAGTGTGCACCTTTGTTGGAGTCATCTGTCACCTGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGCACCTTTGTTGGAGTCATCTGTCACCTGAATTC  1019