BAC Information

Click to search

BAC

Clone NameB6Ng01-050I10
Chromosome7 (Build37)
Map Location 131,146,117 - 131,272,661
singlet/doubletdoublet
Overlap geneEG628779
Upstream geneLOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG545999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050I10.bB6Ng01-050I10.g
ACCDH874442DH874443
length1,115543
definitionDH874442|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I10, 5' end.DH874443|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,146,117 - 131,147,242)(131,272,113 - 131,272,661)
sequence
gaattcagtcagtccagaaatctccccatggattctgtacctttgtaggg
actgtgtcctgtttttgtctcttcccagttttgggagatacgcagaatga
agtaagctctaaatgtttgctgtttaggtcgaatgtattatgtgcatagt
gcagacaactggtcaaactgaatacaatggccattgctaatatggtagtg
gatattcttccacagatttagtacttgcgaagtatgtatgcatgatctct
ttcaaattggtgaattttaaaaataacttcccatcttcaacttagagtac
agtgtgagtgtcttcctctgtctaaaatgtgctcctatgacataatttca
acactttctatgtatataaacaaaaggggttttaatcactacccagtaaa
agggggaaatatagacaatgtagttttatatttgggaatccttacaaaat
ttgagcccatacccatgtagcttatagagataagttgtagcaaagaataa
aacaaatggagtggcataagatagcaccaaagacaacagcaaaacttgga
taatcagaagggcatggggcctctccagtgaggatggactcactcccctg
gtggccacaggggaaagacaggtggatttggggtagatttgcatctaaga
aatgaaaaatacttcaatataagaaaagtctcacccacagagcattttag
cttgctgggggttgtcctaaacaaataccacaggggcagggtgacttgaa
cagagacatttatttcttacaattctggaaactgaacatccaggatcaag
gtgtccatggggttactttctacaccacccccaaactccctgtgcctttg
tgtggttgtttttctgcgtgtgcctgtgtcctgctctcctcttcctgtgt
gtatccctctcagcacaccagagtgtttattggtaactgatagtaaatgt
ctcagtgtcagtacctgggcattgcttgcatgcctgtatctcctcctctt
ggacaggccgcaaggggagctgcgctgttgggactgaaggttctttccct
ctttctactatcctctttctaacaaggcatattaagtgtgcttctatatg
ggaataagcccattt
tttagtggcaacacccactcttccctgggattaaaacaaaaagaatcccc
taaggggtttgaccctcttcttgggcaagcaataaggcacccaatgatac
atgctgaagaataacctcgctgagttagacttctccagataccctggaaa
aaaatggaaagctagaatcatgcccaagaaagggaggatccatgggaact
atggaaggatgaacaggtattggtgttctaaaaaaagaagtaggaaccag
tggggccaccacagcttctaagtagtcaactgaggacatgtgaggcttgt
ccaaagactgtggataaaactgcatgctgaggatattgtatcaataatga
agatggaaaatgggctgcgaagatgaatcacaatcaaacattccctccgc
tctgtctttaggctgtggatcctgagagctgaaaactattatccttccct
tctgttagagtcagctacatctgtctgacaaatgccaggtgcatagtaaa
tgctgagtaagaaggggaaagggagggagggaggtaaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_131146117_131147242
seq2: B6Ng01-050I10.b_44_1158

seq1  GAATTCAGTCAGTCCAGAAATCTCCCCATGGATTCTGTACCTTTGTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGTCCAGAAATCTCCCCATGGATTCTGTACCTTTGTAGGG  50

seq1  ACTGTGTCCTGTTTTTGTCTCTTCCCAGTTTTGGGAGATACGCAGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCCTGTTTTTGTCTCTTCCCAGTTTTGGGAGATACGCAGAATGA  100

seq1  AGTAAGCTCTAAATGTTTGCTGTTTAGGTCGAATGTATTATGTGCATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTCTAAATGTTTGCTGTTTAGGTCGAATGTATTATGTGCATAGT  150

seq1  GCAGACAACTGGTCAAACTGAATACAATGGCCATTGCTAATATGGTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAACTGGTCAAACTGAATACAATGGCCATTGCTAATATGGTAGTG  200

seq1  GATATTCTTCCACAGATTTAGTACTTGCGAAGTATGTATGCATGATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTTCCACAGATTTAGTACTTGCGAAGTATGTATGCATGATCTCT  250

seq1  TTCAAATTGGTGAATTTTAAAAATAACTTCCCATCTTCAACTTAGAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGGTGAATTTTAAAAATAACTTCCCATCTTCAACTTAGAGTAC  300

seq1  AGTGTGAGTGTCTTCCTCTGTCTAAAATGTGCTCCTATGACATAATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGTGTCTTCCTCTGTCTAAAATGTGCTCCTATGACATAATTTCA  350

seq1  ACACTTTCTATGTATATAAACAAAAGGGGTTTTAATCACTACCCAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCTATGTATATAAACAAAAGGGGTTTTAATCACTACCCAGTAAA  400

seq1  AGGGGGAAATATAGACAATGTAGTTTTATATTTGGGAATCCTTACAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAATATAGACAATGTAGTTTTATATTTGGGAATCCTTACAAAAT  450

seq1  TTGAGCCCATACCCATGTAGCTTATAGAGATAAGTTGTAGCAAAGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCATACCCATGTAGCTTATAGAGATAAGTTGTAGCAAAGAATAA  500

seq1  AACAAATGGAGTGGCATAAGATAGCACCAAAGACAACAGCAAAACTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGGAGTGGCATAAGATAGCACCAAAGACAACAGCAAAACTTGGA  550

seq1  TAATCAGAAGGGCATGGGGCCTCTCCAGTGAGGATGGACTCACTCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAAGGGCATGGGGCCTCTCCAGTGAGGATGGACTCACTCCCCTG  600

seq1  GTGGCCACAGGGGAAAGACAGGTGGATTTGGGGTAGATTTGCATCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACAGGGGAAAGACAGGTGGATTTGGGGTAGATTTGCATCTAAGA  650

seq1  AATGAAAAATACTTCAATATAAGAAAAGTCTCACCCACAGAGCATTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAATACTTCAATATAAGAAAAGTCTCACCCACAGAGCATTTTAG  700

seq1  CTTGCTGGGGGTTGTCCTAAACAAATACCACAGGGGCAGGGTGACTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGGGGTTGTCCTAAACAAATACCACAGGGGCAGGGTGACTTGAA  750

seq1  CAGAGACATTTATTTCTTACAATTCTGGAAACTGAACATCCAGGATCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACATTTATTTCTTACAATTCTGGAAACTGAACATCCAGGATCAAG  800

seq1  GTGTCCATGGGGTTACTTTCTACACCACCCCCAAACTCCCTGTGCCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATGGGGTTACTTTCTACACCACCCCCAAACTCCCTGTGCCTTTG  850

seq1  TGTGGTTGTTTTTCTGCGTGTGCCTGTGTCCTGCTCTCCTCTTCCTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTTTTTCTGCGTGTGCCTGTGTCCTGCTCTCCTCTTCCTGTGT  900

seq1  GTATCCCTCTCAGCACACCAGAGTGTTTATTGGTTAACTGATAGTAAAAT  950
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  GTATCCCTCTCAGCACACCAGAGTGTTTATTGG-TAACTGATAGT-AAAT  948

seq1  GTCTCAGTGTCAGGTACCTGGGCATTGCTTGCATGCCTGTATCTCCTCCT  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTGTCA-GTACCTGGGCATTGCTTGCATGCCTGTATCTCCTCCT  997

seq1  CTTGGACAGGCCGCAAGGGGAGCTGCGGCTGTTGGGGAGCTGAGAGTTCT  1050
      |||||||||||||||||||||||||| |||||||||   ||||  |||||
seq2  CTTGGACAGGCCGCAAGGGGAGCTGC-GCTGTTGGG--ACTGAAGGTTCT  1044

seq1  TTCCCCTCCTTTCTTACTAATCCTCTTTCTAAC-AGGCATATTAGGTGTT  1099
      |||||   ||||| |||| |||||||||||||| |||||||||| ||| |
seq2  TTCCC--TCTTTC-TACT-ATCCTCTTTCTAACAAGGCATATTAAGTG-T  1089

seq1  GCTCCTATATGGGATTAAGCCTCATTT  1126
      ||| |||||||||| |||||| |||||
seq2  GCTTCTATATGGGAATAAGCC-CATTT  1115

seq1: chr7_131272113_131272661
seq2: B6Ng01-050I10.g_67_615 (reverse)

seq1  CCTTCCTTACCTCCCTCCCTCCCTTTCCCCTTCTTACTCAGCATTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTACCTCCCTCCCTCCCTTTCCCCTTCTTACTCAGCATTTACTA  50

seq1  TGCACCTGGCATTTGTCAGACAGATGTAGCTGACTCTAACAGAAGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTGGCATTTGTCAGACAGATGTAGCTGACTCTAACAGAAGGGAAG  100

seq1  GATAATAGTTTTCAGCTCTCAGGATCCACAGCCTAAAGACAGAGCGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGTTTTCAGCTCTCAGGATCCACAGCCTAAAGACAGAGCGGAGG  150

seq1  GAATGTTTGATTGTGATTCATCTTCGCAGCCCATTTTCCATCTTCATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTGATTGTGATTCATCTTCGCAGCCCATTTTCCATCTTCATTAT  200

seq1  TGATACAATATCCTCAGCATGCAGTTTTATCCACAGTCTTTGGACAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAATATCCTCAGCATGCAGTTTTATCCACAGTCTTTGGACAAGCC  250

seq1  TCACATGTCCTCAGTTGACTACTTAGAAGCTGTGGTGGCCCCACTGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCCTCAGTTGACTACTTAGAAGCTGTGGTGGCCCCACTGGTTC  300

seq1  CTACTTCTTTTTTTAGAACACCAATACCTGTTCATCCTTCCATAGTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTTTTTTTAGAACACCAATACCTGTTCATCCTTCCATAGTTCCC  350

seq1  ATGGATCCTCCCTTTCTTGGGCATGATTCTAGCTTTCCATTTTTTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCCTCCCTTTCTTGGGCATGATTCTAGCTTTCCATTTTTTTCCAG  400

seq1  GGTATCTGGAGAAGTCTAACTCAGCGAGGTTATTCTTCAGCATGTATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGGAGAAGTCTAACTCAGCGAGGTTATTCTTCAGCATGTATCAT  450

seq1  TGGGTGCCTTATTGCTTGCCCAAGAAGAGGGTCAAACCCCTTAGGGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCTTATTGCTTGCCCAAGAAGAGGGTCAAACCCCTTAGGGGATT  500

seq1  CTTTTTGTTTTAATCCCAGGGAAGAGTGGGTGTTGCCACTAAAGAATTC  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTTAATCCCAGGGAAGAGTGGGTGTTGCCACTAAAGAATTC  549