BAC Information

Click to search

BAC

Clone NameB6Ng01-051G06
Chromosome7 (Build37)
Map Location 6,088,032 - 6,257,494
singlet/doubletdoublet
Overlap geneZfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667
Upstream geneV1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c
Downstream geneZfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051G06.bB6Ng01-051G06.g
ACCDH875045DH875046
length1,133834
definitionDH875045|Mus musculus domesticus DNA, BAC clone: B6Ng01-051G06, 5' end.DH875046|Mus musculus domesticus DNA, BAC clone: B6Ng01-051G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,088,032 - 6,089,177)(6,256,662 - 6,257,494)
sequence
gaattcagtcacaatgcacacatggtagaagaccaccaacgccttcaagc
tctgctctggcttccatgtgcatggtggtatgcttgccccacaccctctc
atacacacacagacaaaatagaactgaaaacattttaaagcttagagatt
cagagtgccagtgtactgtgtgcatctctgaacagtatttgcagtcatga
catggaatctgaatgttgaatacagcaagaagtctgggagctcaggccac
aaggacctgcagggggcagaggagcatgctatgttaagtgacaacctagg
gaagcactgcctaagaactggagaaggctggtaaggaacaagaactttgg
tcaggcacagttcttccttaggctctgactttccctaaggtgtctggtta
ttctgtttagtgtgcaggtttgtaaataggcagatgttaagtgactgggg
agctaattaaagggtggggttccttttcagctgatgcttggaggctctat
aggccagaacctgtgctccacaggacagcaggttctaaagagcaatgggg
tttgaaagtgatgctgtgggcatttagcaaggggacagcagggtcagcct
aggaggtcagcttcacttggttgcactgtctctgaaaagatagggcagac
aactttttttttacctcagtacggtcttcagagatggctctgtggtcaag
ggcacttggtgtccttgaagatgactcacgtttgattcccagaacccaca
tggtggctcaaagtagctccagttccaggggctctaataccctcttctgg
ccaccccaggcaccagggaaacatgtggtatacataaacacacacaggca
aaacacttatacacaaataaaatttcagaacgttagaacctgggatatac
gactctgctagctatgcagtacatctgtgggggcagtggaccatgccagg
aaacctggtaagtcgagtaggttcagaaccccaacacctcatacctaagg
acagggaatatttcacctactcccaaccagatttctggcctggaacgaat
gacaccaactcccccacaaaaaacatgatcctgggtacgtaacaagaaag
gattccatgctatgaaattctagatgatctagg
gaattctttcatgctgcgcaagatgagcactctggctgaaggctttccca
cacagatcacattcataaggtctgtcctcactgtgaattctcttatgccg
cgtaagagatattcggtggctgaatgctttcccacattcttcacactgat
agggcttctctccggtatgaattctctgatgttcactaagaaatgactgg
cggccaaacactttactacatttattgcacttgaaaggtttctcttccga
atggatgttgagatgcactttaagatttttcatcccaccaaacatctttc
cacattccttgcatgcaatgagtttctttttccttttatgaattttctgg
tgctgaataaaggatgaaaggcgactacacaccttctcacacttgctgca
cttaaactgcttctccccactatgaattcttaggtgcagaataagggtgg
agagccgtccaaagtctttctgacatttatcacatttgtagggattccct
gaagtgtgaattctctgatggagcattaaggctgagatcctactaaagga
cttcccgcatttcccacacataaaagggttttccgactggcaagttttct
gcctggcactctgaattaaggccttcttactttcatgagttttctttcca
atacaaactcttttatgtacaaggactggctgctttttgaagcctctttt
gtatttattgtatttttgtattttctttctgttgtgactcctcttatgaa
gtaaaagggatgacatccgactgaagactttcccacacttcctgcactgg
tgaacgctgtcagtagtgtgatttattacggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6088032_6089177
seq2: B6Ng01-051G06.b_45_1177

seq1  GAATTCAGTCACAATGCACACATGGTAGAAGACCACCAACGCCTTCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACAATGCACACATGGTAGAAGACCACCAACGCCTTCAAGC  50

seq1  TCTGCTCTGGCTTCCATGTGCATGGTGGTATGCTTGCCCCACACCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTGGCTTCCATGTGCATGGTGGTATGCTTGCCCCACACCCTCTC  100

seq1  ATACACACACAGACAAAATAGAACTGAAAACATTTTAAAGCTTAGAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACAGACAAAATAGAACTGAAAACATTTTAAAGCTTAGAGATT  150

seq1  CAGAGTGCCAGTGTACTGTGTGCATCTCTGAACAGTATTTGCAGTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCCAGTGTACTGTGTGCATCTCTGAACAGTATTTGCAGTCATGA  200

seq1  CATGGAATCTGAATGTTGAATACAGCAAGAAGTCTGGGAGCTCAGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATCTGAATGTTGAATACAGCAAGAAGTCTGGGAGCTCAGGCCAC  250

seq1  AAGGACCTGCAGGGGGCAGAGGAGCATGCTATGTTAAGTGACAACCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTGCAGGGGGCAGAGGAGCATGCTATGTTAAGTGACAACCTAGG  300

seq1  GAAGCACTGCCTAAGAACTGGAGAAGGCTGGTAAGGAACAAGAACTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTGCCTAAGAACTGGAGAAGGCTGGTAAGGAACAAGAACTTTGG  350

seq1  TCAGGCACAGTTCTTCCTTAGGCTCTGACTTTCCCTAAGGTGTCTGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACAGTTCTTCCTTAGGCTCTGACTTTCCCTAAGGTGTCTGGTTA  400

seq1  TTCTGTTTAGTGTGCAGGTTTGTAAATAGGCAGATGTTAAGTGACTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTAGTGTGCAGGTTTGTAAATAGGCAGATGTTAAGTGACTGGGG  450

seq1  AGCTAATTAAAGGGTGGGGTTCCTTTTCAGCTGATGCTTGGAGGCTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTAAAGGGTGGGGTTCCTTTTCAGCTGATGCTTGGAGGCTCTAT  500

seq1  AGGCCAGAACCTGTGCTCCACAGGACAGCAGGTTCTAAAGAGCAATGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAACCTGTGCTCCACAGGACAGCAGGTTCTAAAGAGCAATGGGG  550

seq1  TTTGAAAGTGATGCTGTGGGCATTTAGCAAGGGGACAGCAGGGTCAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTGATGCTGTGGGCATTTAGCAAGGGGACAGCAGGGTCAGCCT  600

seq1  AGGAGGTCAGCTTCACTTGGTTGCACTGTCTCTGAAAAGATAGGGCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCAGCTTCACTTGGTTGCACTGTCTCTGAAAAGATAGGGCAGAC  650

seq1  AACTTTTTTTTTACCTCAGTACGGTCTTCAGAGATGGCTCTGTGGTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTTTTACCTCAGTACGGTCTTCAGAGATGGCTCTGTGGTCAAG  700

seq1  GGCACTTGGTGTCCTTGAAGATGACTCAGGTTTGATTCCCAGAACCCACA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCACTTGGTGTCCTTGAAGATGACTCACGTTTGATTCCCAGAACCCACA  750

seq1  TGGTGGCTCAAAGTAGCTCCAGTTCCAGGGGCTCTAATACCCTCTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCAAAGTAGCTCCAGTTCCAGGGGCTCTAATACCCTCTTCTGG  800

seq1  CCACCCCAGGCACCAGGGAAACATGTGGTATACATAAACACACACAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGGCACCAGGGAAACATGTGGTATACATAAACACACACAGGCA  850

seq1  AAACACTTATACACAAAATAAAATTTCAGAACGTTAGAACCTGGGATATA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAACACTTATACAC-AAATAAAATTTCAGAACGTTAGAACCTGGGATATA  899

seq1  CGACTCTGCTAGCTATGCAGTACATCTGT-GGGGCAGTGGACCATGCCAG  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGACTCTGCTAGCTATGCAGTACATCTGTGGGGGCAGTGGACCATGCCAG  949

seq1  GAAACCTGGTAAGGTCGAGTAGGTTCAGAAACCCCAACACCTCATACCTA  999
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  GAAACCTGGTAA-GTCGAGTAGGTTCAG-AACCCCAACACCTCATACCTA  997

seq1  AGGACAGGGAATATTTCACCTACTCCCAACCAGATTTCCTGGCCTGGAAC  1049
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGACAGGGAATATTTCACCTACTCCCAACCAGATTT-CTGGCCTGGAAC  1046

seq1  AGATGACCACAACTCCCCACACAAAGAACATGACCCCTGGTCACGTAACA  1099
        |||||  ||||||||| |||||| |||||||  |||||  ||||||||
seq2  GAATGACACCAACTCCCC-CACAAAAAACATGA-TCCTGGGTACGTAACA  1094

seq1  CAGAACAGAATTCTCCATGCTAATGAGATATCTAGATGGGTTCTAGG  1146
       |||| || ||  |||||||| |||| || |||||||  | ||||||
seq2  -AGAA-AGGAT--TCCATGCT-ATGAAAT-TCTAGAT--GATCTAGG  1133

seq1: chr7_6256662_6257494
seq2: B6Ng01-051G06.g_65_898 (reverse)

seq1  ACACCGTAAT-AATCACACTACTGACAGCGTTCACCAGTGCAGGAAGTGT  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACCGTAATAAATCACACTACTGACAGCGTTCACCAGTGCAGGAAGTGT  50

seq1  GGGAAAGTCTTCAGTCGGATGTCATCCCTTTTACTTCATAAGAGGAGTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTCTTCAGTCGGATGTCATCCCTTTTACTTCATAAGAGGAGTCA  100

seq1  CAACAGAAAGAAAATACAAAAATACAATAAATACAAAAGAGGCTTCAAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAGAAAATACAAAAATACAATAAATACAAAAGAGGCTTCAAAA  150

seq1  AGCAGCCAGTCCTTGTACATAAAAGAGTTTGTATTGGAAAGAAAACTCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGTCCTTGTACATAAAAGAGTTTGTATTGGAAAGAAAACTCAT  200

seq1  GAAAGTAAGAAGGCCTTAATTCAGAGTGCCAGGCAGAAAACTTGCCAGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGAAGGCCTTAATTCAGAGTGCCAGGCAGAAAACTTGCCAGTC  250

seq1  GGAAAACCCTTTTATGTGTGGGAAATGCGGGAAGTCCTTTAGTAGGATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCCTTTTATGTGTGGGAAATGCGGGAAGTCCTTTAGTAGGATCT  300

seq1  CAGCCTTAATGCTCCATCAGAGAATTCACACTTCAGGGAATCCCTACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAATGCTCCATCAGAGAATTCACACTTCAGGGAATCCCTACAAA  350

seq1  TGTGATAAATGTCAGAAAGACTTTGGACGGCTCTCCACCCTTATTCTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAATGTCAGAAAGACTTTGGACGGCTCTCCACCCTTATTCTGCA  400

seq1  CCTAAGAATTCATAGTGGGGAGAAGCAGTTTAAGTGCAGCAAGTGTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAATTCATAGTGGGGAGAAGCAGTTTAAGTGCAGCAAGTGTGAGA  450

seq1  AGGTGTGTAGTCGCCTTTCATCCTTTATTCAGCACCAGAAAATTCATAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTAGTCGCCTTTCATCCTTTATTCAGCACCAGAAAATTCATAAA  500

seq1  AGGAAAAAGAAACTCATTGCATGCAAGGAATGTGGAAAGATGTTTGGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGAAACTCATTGCATGCAAGGAATGTGGAAAGATGTTTGGTGG  550

seq1  GATGAAAAATCTTAAAGTGCATCTCAACATCCATTCGGAAGAGAAACCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAATCTTAAAGTGCATCTCAACATCCATTCGGAAGAGAAACCTT  600

seq1  TCAAGTGCAATAAATGTAGTAAAGTGTTTGGCCGCCAGTCATTTCTTAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGCAATAAATGTAGTAAAGTGTTTGGCCGCCAGTCATTTCTTAGT  650

seq1  GAACATCAGAGAATTCATACCGGAGAGAAGCCCTATCAGTGTGAAGAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCAGAGAATTCATACCGGAGAGAAGCCCTATCAGTGTGAAGAATG  700

seq1  TGGGAAAGCATTCAGCCACCGAATATCTCTTACGCGGCATAAGAGAATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGCATTCAGCCACCGAATATCTCTTACGCGGCATAAGAGAATTC  750

seq1  ACAGTGAGGACAGACCTTATGAATGTGATCTGTGTGGGAAAGCCTTCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGGACAGACCTTATGAATGTGATCTGTGTGGGAAAGCCTTCAGC  800

seq1  CAGAGTGCTCATCTTGCGCAGCATGAAAGAATTC  833
      ||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCTCATCTTGCGCAGCATGAAAGAATTC  834