BAC Information

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BAC

Clone NameB6Ng01-051P13
Chromosome7 (Build37)7 (Build37)
Map Location 11,583,701 - 11,584,79812,152,527 - 12,153,081
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042163, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798
Downstream geneGm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051P13.bB6Ng01-051P13.g
ACCDH875462DH875463
length1,0921,002
definitionDH875462|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P13, 5' end.DH875463|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,583,701 - 11,584,798)(12,152,527 - 12,153,081)
sequence
gaattcactatgaagcccatgtcttgtcatgtacccaatggacaccctgg
gctgtgcaaagtagaaaggcctcaagcagtacatctttgtgggatagttt
tacataatgtgcattcaaatactgatttctgtgcaaggacacctaattgc
tattggctgttggcagtgtcataattgttgaagcatctcctgtctcaagg
ttgtgtaaaaattgttcttcatcacctctgattggctaaatgcggagagc
ttttgaggttgcttctaggaaggtcaacctgatcaacccctagacacggt
gagaatgggactttgtttattgcctgtttgattacttttattattgtcta
gtttgttccttatttatgctttgttttttcttaactattttgtttatgcc
ttaggactggccatatactttgtgtgtacctagaatggtataaaagcaga
atggaaaaaaataaacaggccttcagcttcagaactggctagggtcatgt
tacagtgttgtccagttgtctttttcttatcaatccttgctcccttcctg
aagaacccattgactgactgagctggctgggtcagttaataaagatctaa
atagacaatagctgggcaggagagataaaataggattttccatcccagtg
agggggttaaaggtggggggcagagatcaagaagggtgtcatgagtgagg
cttcatgaggagatgttggagcaggaggagccagggaaagactaagatgg
caggtaacaagacatgggactggaaaataatccaggccatgatagtcggg
tcagaatagatacatttctgtccagctgtaattctttgaagcttctgtat
gaatataatctctgtgtcattatgtgggaggatacagaagaaagaccaca
gttacacttttacatgacacagtcctccttgcctcagccacttgtaggca
caccccactaccacttggtgttttcttttcttcttctttttctctggaga
aaggatctaccatttagccatagctgactcaagacgcacctgttctgtcc
ctgagtgttagtaaaggctgtaccaccatgccagaatacatt
gaattctttgcagtctgtgggctagtggtgtgctgatttttaaagtgtcc
ccacctgtagtggctattcctggttgtcaacttgactatatttggaatga
actacaatccagaattggaaggcccaccagtgacccttatctagaggctt
ggagatagaagattctgatctggatcttggtatggagatcttgaggcata
gtggctatgaattccagaagactaaatctctgacttcaaggtaatctggg
attaaaggtgtggtggaacacgcctttaatctgggctataccttctgttg
gagacaatataaggacattgggagaagggagtcttgctcttgctccttag
cctgcttggtgtgtgagactgagtaactgctagatccttggactttcatt
cacagctactactgaatctatacatggtattctacacagtattgcttctg
accaaggaactcatttcactgccagagaagtgcgacagtgggcccatgat
catggaattcattggtcttaccatgttccccatcatcctgaagcagctgg
tctgatagaaagatggaatggccttttgaagatgaagttacagcaccaat
taggtggtaacagcatggaaggctgggacatagttcttcagaaggcagta
tatgctttgaatcagtgtctgatatatggtacagtttcccccatagccag
gatccatgggtccaggaatcaggggtggaaaagggaatagttccacttac
tatcactcctagtgaccctctaggaaaatttttgcttcctttccccataa
ttttaggttctactggcctagaagtttggctccagacaggggagtgctcc
taccaggagctacaacaatcattccattgaactggaatctcagacttcac
cctggttattttgggcttctaatgcccttaaaccaacagctaaaaaagga
gtacagtgttaggagggtgatagatccagattaccatggggaaattgatt
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11583701_11584798
seq2: B6Ng01-051P13.b_46_1137

seq1  GAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTGG  50

seq1  GCTGTGCAAAGTAGAAAGGCCTCAAGCAGTACATCTTTGTGGGATAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAAAGTAGAAAGGCCTCAAGCAGTACATCTTTGTGGGATAGTTT  100

seq1  TACATAATGTGCATTCAAATACTGATTTCTGTGCAAGGACACCTAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGTGCATTCAAATACTGATTTCTGTGCAAGGACACCTAATTGC  150

seq1  TATTGGCTGTTGGCAGTGTCATAATTGTTGAAGCATCTCCTGTCTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTGTTGGCAGTGTCATAATTGTTGAAGCATCTCCTGTCTCAAGG  200

seq1  TTGTGTAAAAATTGTTCTTCATCACCTCTGATTGGCTAAATGCGGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAAAATTGTTCTTCATCACCTCTGATTGGCTAAATGCGGAGAGC  250

seq1  TTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACACGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACACGGT  300

seq1  GAGAATGGGACTTTGTTTATTGCCTGTTTGATTACTTTTATTATTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGGACTTTGTTTATTGCCTGTTTGATTACTTTTATTATTGTCTA  350

seq1  GTTTGTTCCTTATTTATGCTTTGTTTTTTCTTAACTATTTTGTTTATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCCTTATTTATGCTTTGTTTTTTCTTAACTATTTTGTTTATGCC  400

seq1  TTAGGACTGGCCATATACTTTGTGTGTACCTAGAATGGTATAAAAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTGGCCATATACTTTGTGTGTACCTAGAATGGTATAAAAGCAGA  450

seq1  ATGGAAAAAAATAAACAGGCCTTCAGCTTCAGAACTGGCTAGGGTCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAAATAAACAGGCCTTCAGCTTCAGAACTGGCTAGGGTCATGT  500

seq1  TACAGTGTTGTCCAGTTGTCTTTTTCTTATCAATCCTTGCTCCCTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTTGTCCAGTTGTCTTTTTCTTATCAATCCTTGCTCCCTTCCTG  550

seq1  AAGAACCCATTGACTGACTGAGCTGGCTGGGTCAGTTAATAAAGATCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCATTGACTGACTGAGCTGGCTGGGTCAGTTAATAAAGATCTAA  600

seq1  ATAGACAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAGTG  650

seq1  AGGGGGTTAAAGGTGGGGGGCAGAGATCAAGAAGGGTGTCATGAGTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTAAAGGTGGGGGGCAGAGATCAAGAAGGGTGTCATGAGTGAGG  700

seq1  CTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAGATGG  750

seq1  CAGGTAACAAGACATGGGACTGGAAAATAATCCAGGCCATGATAGTCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAACAAGACATGGGACTGGAAAATAATCCAGGCCATGATAGTCGGG  800

seq1  TCAGAATAGATACATTTCTGTCCAGCTGTAATTC-TTGAAGCTTCTGTAT  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGAATAGATACATTTCTGTCCAGCTGTAATTCTTTGAAGCTTCTGTAT  850

seq1  GAATATAATCTCTGTGTCATTATGTGGGAGGATACAGAAGAAAGACCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATCTCTGTGTCATTATGTGGGAGGATACAGAAGAAAGACCACA  900

seq1  GTTACACTTTTACATGACACAGTCCTCC-TGCCTCAGCCACTTGTAGGCA  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTACACTTTTACATGACACAGTCCTCCTTGCCTCAGCCACTTGTAGGCA  950

seq1  CACCCCACTA-CACTTGGTGTTTTCTTTTTCTTCTTCTTTTTCTCTGGAG  997
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  CACCCCACTACCACTTGGTGTTTTC-TTTTCTTCTTCTTTTTCTCTGGAG  999

seq1  AAAGGATCTTACCATCTAGCCATAGCTGAACTCAAAGACGCACCTGTTTC  1047
      |||||||| |||||| |||||||||||| |||| |||||||||||| |||
seq2  AAAGGATC-TACCATTTAGCCATAGCTG-ACTC-AAGACGCACCTG-TTC  1045

seq1  TGTCCCCTGAGTGTTAGTAAAGGCTTGTACCACCATGCCCAGATATACAT  1097
      ||| |||||||||||||||||||| |||||||||||| ||||| ||||||
seq2  TGT-CCCTGAGTGTTAGTAAAGGC-TGTACCACCATG-CCAGA-ATACAT  1091

seq1  T  1098
      |
seq2  T  1092

seq1: chr7_12152527_12153081
seq2: B6Ng01-051P13.g_72_624

seq1  GAATTCTTTGCAGTCTGTGGGGTAGTGGTGTGCTGATCTTTAAAGTGTCC  50
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GAATTCTTTGCAGTCTGTGGGCTAGTGGTGTGCTGATTTTTAAAGTGTCC  50

seq1  CCACCTGTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATGA  100

seq1  ACTACAATCCAGAATTGGAAGGCCCACCAGTGACCATTATCTAGAGGCTT  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTACAATCCAGAATTGGAAGGCCCACCAGTGACCCTTATCTAGAGGCTT  150

seq1  GGAGATAGAAGTTTCTGATCTGCATCTTGGTATGGAGATCTTGAGGCATA  200
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  GGAGATAGAAGATTCTGATCTGGATCTTGGTATGGAGATCTTGAGGCATA  200

seq1  GTGGCTATGAATTCCAGAAGATTAAATCTCTGACTTCAAGGTCATCTGGG  250
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GTGGCTATGAATTCCAGAAGACTAAATCTCTGACTTCAAGGTAATCTGGG  250

seq1  ATTAAAGGTGTGGTGGAACACGCCTTTAATCTGGGCTATACCTTCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGGTGGAACACGCCTTTAATCTGGGCTATACCTTCTGTTG  300

seq1  GAGACAATATAAGGACATTGGAAGAAGGGAGTCTTGCTCTTATTCCTTAG  350
      ||||||||||||||||||||| |||||||||||||||||||  |||||||
seq2  GAGACAATATAAGGACATTGGGAGAAGGGAGTCTTGCTCTTGCTCCTTAG  350

seq1  CCTGCTTGCTGTGTGAGGCTGAGTAACTGCTAGATCCTTGGACTTTCATT  400
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  CCTGCTTGGTGTGTGAGACTGAGTAACTGCTAGATCCTTGGACTTTCATT  400

seq1  CACAGCTACTACTGAATCTATCGTCATGGTATTCCACACAGTATTGCTTC  450
      |||||||||||||||||||||   |||||||||| |||||||||||||||
seq2  CACAGCTACTACTGAATCTAT--ACATGGTATTCTACACAGTATTGCTTC  448

seq1  TGACCAAGGAACTCATTTCACTGCCAGAGAAGTGGGACAGTGGGCCCAGG  500
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TGACCAAGGAACTCATTTCACTGCCAGAGAAGTGCGACAGTGGGCCCATG  498

seq1  ATCATGGAATTCATTGGTCTTACCATGTTACCCATCATCCTGAAGCAGCT  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCATGGAATTCATTGGTCTTACCATGTTCCCCATCATCCTGAAGCAGCT  548

seq1  GGTCT  555
      |||||
seq2  GGTCT  553