BAC Information

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BAC

Clone NameB6Ng01-052E16
Chromosome7 (Build37)
Map Location 93,945,353 - 94,086,593
singlet/doubletdoublet
Overlap geneEG546983, Vmn2r-ps87, LOC637896
Upstream geneEG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1
Downstream geneEG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E16.bB6Ng01-052E16.g
ACCDH875687DH875688
length1,243559
definitionDH875687|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E16, 5' end.DH875688|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,085,313 - 94,086,593)(93,945,353 - 93,945,856)
sequence
gaattcaaaaatcacatgcacagagatttttgtaggaaaaacagccatca
gtttccttaccatagaacttgagaagctgttggtctttttaagagcagcg
tttacaatcggtttctataagggcttcttcagccacaatagactcctaac
tacaggtgcagaactccaaagaccaattgatactgtctatttttttttct
ttttctctttcaccaaattatctccagatagttggagagtactgcatttc
tcaaacctgttctctcatgtgtaaactatctctagtcagggtataaagca
cctatgagcattaccttcacttctctagattttcacatagttctaaacac
atacacaaaaacacataaaacagaaaccaacagatccagacacacacgac
cctttctcatcctccacaagcaggcaaaagaattagaggatttctgagag
ggaagctcccactgcaagaacagaactcagtccctgtgcctgatatcctg
agagtaccaggcttccctggctctccccacttcccagggcataccccagg
gcagcagcctgtggtcctcctagcatgtttgctgaccacagtcctccagt
cctcaccgcctgagaggacagctgcaaatacaaagcgtgcatttcagaaa
accccattgtctacaaacatagtcacaaggtcttctgcttccactaggac
gaccaaaaccagagaaaccaaactcaggcggatctaaactcaggctgatc
agaataaactcaggacaatcagaatccaaaactgaggcagatcagtataa
actcagatggatccaaactcatgctgtgccgtgcttctgaaacaaaggat
gagacacagaaacacacacacacacacacacacacacacacacacacaca
caacaagcacatgttcatttcagaaaacagaaacagacactcagaacaga
gacactgggccagcatgcacacattctagagggatccccatacctccaag
tcggatcctcagtgtgaagggtgatcccgttcctggcctaaccaccaata
aagacccacaaagtgatgactccccccacgtctgactgaaggagtgggtg
aaccccaatgctcatagagaaactgtcctaaagcaactgcaagaagactt
tattcaagagtctcttggtcccagctaaactacacagtaaggaccatgtg
ctagactgtaaggtgaagaaaccactcaaagagttagggaggt
gaattcaagttttaaaattcaaaatgtcacttcactttcattcttaaaag
tagaagacattgtggtgcattgaacaggaaatattcatgagataaactac
agactttctacatattaaagagaaataccagaattgtttagtagacactt
accaagcagattagaaattgtggcatcattgatgatggcaaaacaaaacc
aacaatatttttcaaaaaatgtaaagcattaaatattttatatagaaacc
attgactataaaatgagtgtataataaatgttaatgtaaattaaattata
tgatttgaaaaaaattaaatatgaatgtaattatagattatttcatttag
gtggttattttttctatttaagttatatatatataatttataatccatat
gtagtgtgaatgcaatatatatatatgtgtatatatatacacacatatat
atatatacatatgtatatatagagttctcactccatatggggatataaat
atctatgtatatataaaaatataaaaatatatatatatatatgtgtttat
atatactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_94085313_94086593
seq2: B6Ng01-052E16.b_46_1288 (reverse)

seq1  ACCTCCCCTACCCTCTTTGAGTTGTGGTTTCTTCCTTTAAATAACCCCTT  50
      |||||||  |  ||||||||   ||||||||||           | ||||
seq2  ACCTCCCTAA--CTCTTTGA---GTGGTTTCTT-----------CACCTT  34

seq1  ACCCAGCTACTAGGGGCACCATGGTCCTCTACCCCTGTGTAGTGTATGAC  100
      |  |||   |||   ||| ||||||||| ||   ||||||||| ||    
seq2  A--CAG--TCTA---GCA-CATGGTCCT-TA---CTGTGTAGTTTA----  68

seq1  TGTGGGCCCAAGAGCACTCTTGAAATAAAAGTCTTCTTGCAGTTTGCTTT  150
        |||| ||||||| |||||||||   ||||||||||||||| |||||||
seq2  GCTGGGACCAAGAG-ACTCTTGAA--TAAAGTCTTCTTGCAG-TTGCTTT  114

seq1  AAGACAGTTTCTC-ATGAGCAATTTGGGGTGTCA-CCACTCC-TCAGTCA  197
      | ||||||||||| |||||||  ||||||| ||| ||||||| |||||||
seq2  AGGACAGTTTCTCTATGAGCA--TTGGGGT-TCACCCACTCCTTCAGTCA  161

seq1  GAACGT-GGGGGAGTCATCACTTTGTGGGTCTTTATTTGGTGTGTAGGCC  246
      | |||| |||||||||||||||||||||||||||| ||||||  ||||||
seq2  G-ACGTGGGGGGAGTCATCACTTTGTGGGTCTTTA-TTGGTGGTTAGGCC  209

seq1  AGGAAACGTGATCACCCCTCACACCTGA-GATCCGACTTGGAGGTATGGG  295
      ||| |||| |||||||| ||||| |||| |||||||||||||||||||||
seq2  AGG-AACGGGATCACCCTTCACA-CTGAGGATCCGACTTGGAGGTATGGG  257

seq1  GATCCCCTCTAGAATGTGTGCATGCTGG-CCAGTGTCTCTGTTCTGAGTG  344
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAT-CCCTCTAGAATGTGTGCATGCTGGCCCAGTGTCTCTGTTCTGAGTG  306

seq1  TCTGTTTCTGTTTTCTGAAATGAACATGTGCTTGTTGTGTGTGTGTGTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGTTTTCTGAAATGAACATGTGCTTGTTGTGTGTGTGTGTGT  356

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTGTCTCATCCTTTGTTTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTGTCTCATCCTTTGTTTCA  406

seq1  GAAGCACGGCACAGCATGAGTTTGGATCCATCTGAGTTTATACTGATCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACGGCACAGCATGAGTTTGGATCCATCTGAGTTTATACTGATCTG  456

seq1  CCTCAGTTTTGGATTCTGATTGTCCTGAGTTTATTCTGATCAGCCTGAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTTGGATTCTGATTGTCCTGAGTTTATTCTGATCAGCCTGAGT  506

seq1  TTAGATCCGCCTGAGTTTGGTTTCTCTGGTTTTGGTCGTCCTAGTGGAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCCGCCTGAGTTTGGTTTCTCTGGTTTTGGTCGTCCTAGTGGAAG  556

seq1  CAGAAGACCTTGTGACTATGTTTGTAGACAATGGGGTTTTCTGAAATGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACCTTGTGACTATGTTTGTAGACAATGGGGTTTTCTGAAATGCA  606

seq1  CGCTTTGTATTTGCAGCTGTCCTCTCAGGCGGTGAGGACTGGAGGACTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTGTATTTGCAGCTGTCCTCTCAGGCGGTGAGGACTGGAGGACTGT  656

seq1  GGTCAGCAAACATGCTAGGAGGACCACAGGCTGCTGCCCTGGGGTATGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCAAACATGCTAGGAGGACCACAGGCTGCTGCCCTGGGGTATGCC  706

seq1  CTGGGAAGTGGGGAGAGCCAGGGAAGCCTGGTACTCTCAGGATATCAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTGGGGAGAGCCAGGGAAGCCTGGTACTCTCAGGATATCAGGC  756

seq1  ACAGGGACTGAGTTCTGTTCTTGCAGTGGGAGCTTCCCTCTCAGAAATCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACTGAGTTCTGTTCTTGCAGTGGGAGCTTCCCTCTCAGAAATCC  806

seq1  TCTAATTCTTTTGCCTGCTTGTGGAGGATGAGAAAGGGTCGTGTGTGTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCTTTTGCCTGCTTGTGGAGGATGAGAAAGGGTCGTGTGTGTCT  856

seq1  GGATCTGTTGGTTTCTGTTTTATGTGTTTTTGTGTATGTGTTTAGAACTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTTGGTTTCTGTTTTATGTGTTTTTGTGTATGTGTTTAGAACTA  906

seq1  TGTGAAAATCTAGAGAAGTGAAGGTAATGCTCATAGGTGCTTTATACCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATCTAGAGAAGTGAAGGTAATGCTCATAGGTGCTTTATACCCT  956

seq1  GACTAGAGATAGTTTACACATGAGAGAACAGGTTTGAGAAATGCAGTACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAGATAGTTTACACATGAGAGAACAGGTTTGAGAAATGCAGTACT  1006

seq1  CTCCAACTATCTGGAGATAATTTGGTGAAAGAGAAAAAGAAAAAAAAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTATCTGGAGATAATTTGGTGAAAGAGAAAAAGAAAAAAAAATA  1056

seq1  GACAGTATCAATTGGTCTTTGGAGTTCTGCACCTGTAGTTAGGAGTCTAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATCAATTGGTCTTTGGAGTTCTGCACCTGTAGTTAGGAGTCTAT  1106

seq1  TGTGGCTGAAGAAGCCCTTATAGAAACCGATTGTAAACGCTGCTCTTAAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGAAGAAGCCCTTATAGAAACCGATTGTAAACGCTGCTCTTAAA  1156

seq1  AAGACCAACAGCTTCTCAAGTTCTATGGTAAGGAAACTGATGGCTGTTTT  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAACAGCTTCTCAAGTTCTATGGTAAGGAAACTGATGGCTGTTTT  1206

seq1  TCCTACAAAAATCTCTGTGCATGTGATTTTTGAATTC  1281
      |||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAAAATCTCTGTGCATGTGATTTTTGAATTC  1243

seq1: chr7_93945353_93945856
seq2: B6Ng01-052E16.g_65_610

seq1  GAATTCAAGTTTTAAAATTCAAAATGTCACTTCACTTTCATTCTTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTTAAAATTCAAAATGTCACTTCACTTTCATTCTTAAAAG  50

seq1  TAGAAGACATTGTGGTGCATTGAACAGGAAATATTCATGAGATAAACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACATTGTGGTGCATTGAACAGGAAATATTCATGAGATAAACTAC  100

seq1  AGACTTTCTACATATTAAAGAGAAATACCAGAATTGTTTAGTAGACACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTACATATTAAAGAGAAATACCAGAATTGTTTAGTAGACACTT  150

seq1  ACCAAGCAGATTAGAAATTGTGGCATCATTGATGATGGCAAAACAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAGATTAGAAATTGTGGCATCATTGATGATGGCAAAACAAAACC  200

seq1  AACAATATTTTTCAAAAAATGTAAAGCATTAAATATTTTATATAGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTTTTCAAAAAATGTAAAGCATTAAATATTTTATATAGAAACC  250

seq1  ATTGACTATAAAATGAGTGTATAATAAATGTTAATGTAAATTAAATTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTATAAAATGAGTGTATAATAAATGTTAATGTAAATTAAATTATA  300

seq1  TGATTTGAAAAAAATTAAATATGAATGTAATTATAGATTATTTCATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAAAAAAATTAAATATGAATGTAATTATAGATTATTTCATTTAG  350

seq1  GTGGTTATTTTTTCTATTTAAGTTATATATATATAATTTATAATCCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATTTTTTCTATTTAAGTTATATATATATAATTTATAATCCATAT  400

seq1  GTAGTGTGAATGCAATATATATATATGTGTATATATATACACACATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTGAATGCAATATATATATATGTGTATATATATACACACATATAT  450

seq1  ATATATACATATGTACATA---------CAC-------------------  472
      ||||||||||||||| |||         |||                   
seq2  ATATATACATATGTATATATAGAGTTCTCACTCCATATGGGGATATAAAT  500

seq1  --------------ACACACACACACATATATATATATATATGTGT  504
                    | | | | | | ||||||||||||||||||||
seq2  ATCTATGTATATATAAAAATATAAAAATATATATATATATATGTGT  546