BAC Information

Click to search

BAC

Clone NameB6Ng01-052F15
Chromosome7 (Build37)
Map Location 100,668,386 - 100,698,161
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298
Downstream geneLOC666783, EG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052F15.bB6Ng01-052F15.g
ACCDH875733DH875734
length1,151898
definitionDH875733|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F15, 5' end.DH875734|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,697,005 - 100,698,161)(100,668,386 - 100,669,185)
sequence
gaattcacattaaaatttcattttaacaatacttatctaagaccaagggt
tttttttttaatttgtttgtttctggattgctgatcagatgttagttatt
actcttgtatgaatcataccataattgatctttataatgtctagctcttg
ttacttaaagtggaatgccagtttaaaacatttgtgaagctatttaactg
tcaaatcctagctatttatgatgcttctaatcatttgccatcatcttccc
cacagacagttgtagaattttcatgcctgatctttatagcctctctgaaa
ccctcaaaacaatttacatgctcatatttaatcaacttacttaaattcca
ttaaattgtatcattaaaataccacatacagccacataaatcagactttt
cttgccaaggcttttgcttgcaaaaaataatactaataatttttcaggaa
atgctctgtgtgtctagagtttggagtgttcagtcatcagtcagtacata
ttacaaaatggacagaggcaggtgatggttgaacaaggtggttaaatgca
agtcttttaagagtgcagtgctattaccctcaccatgagtatctggaaaa
catgaggtcaagaaagaaagcccattttctcaaagtcacaactgatgggt
tccaaacaagcagtttctttctgaaaccttggcctattcaatagattaag
atttgacaaaaaaaaacctacttccctggtctctatacgtctttaagaca
acaaaaatgtttcttccaactcactattgaaaaatatgcctgagcaaagt
ccaagattctttcccaaatgtgtgctgttcgattattcaccaagttgttg
acattcaatctattgttgattagataaaaaatgcacgagggacccttaca
acacagcatgaaattgcatctgcctctggtgaaataattgactgaacaac
aaagttttcaacataatcgagttaaaccaaaattaaaccttacagctatt
gaccttgctgtttctcttgctatattggaagctagccaagttactcaaca
cctttgctacttcttcaacatatttctaaattgctaagcattctgcattg
cctagataataaacaaattttacttagggaaaatgtatggataaaatcag
t
gaattcctgatctttccaagacttttatcatgaaggggtatttgattttg
ttaaatacttcctcagcatctaaggagatgatcatgtggtgtttgtcttt
gaatttgtttatagagtggattatattgatggctttccatatattaagcc
atccctgcatccttggaatgaagactacttggtcaggatggatgattgtt
ttgatgtgttcttgcattcggttagcaggaattttattgagtaattttgc
attgatattcataagggaaattggtttgaggttctctacctttgttgggt
ctttatgtggtttaggtatcagagtaattgtgatttcgtagaatgaatta
tgtagagtaccttctgtttctattttgtggaatagtttgagaagaattgg
aattatgtcttctttgcatgactgatagaactcttcactaaacccatctg
gtcctgggctctttttggttgggacactattaatgactacctctatttct
ttaggggatataggactgtttaggtcattaatctgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcattcaggttcccga
cagacattcttaactccatgcctatccatgtcttataaccactttgtgaa
atgaaaattattttatttaacatgatcgcataaccctgagacacagatat
aacttcaaatctttgttatttaaattccattaaatcaagttaaaaattgt
atcccttatctctccattgaacattttcccagattttccttcctatagat
ggtatttataaactatgaagtgtctttttcattattagaaaatatgatac
atttggtgtagattcagcgctcagctggcatatttgcaaatcagtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_100697005_100698161
seq2: B6Ng01-052F15.b_43_1193 (reverse)

seq1  ACTGATTTTATTCATTACATTTTTCCTAAGTAAAATTTGTATAATTATCT  50
      ||||||||||| || |||||||| |||||||||||||||| | |||||||
seq2  ACTGATTTTATCCA-TACATTTTCCCTAAGTAAAATTTGT-TTATTATCT  48

seq1  AGCCAAATGCAGAATGCTTAGCAATTTAGAAATATGTTTGAAGAAGTAGG  100
      || | ||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AGGC-AATGCAGAATGCTTAGCAATTTAGAAATATG-TTGAAGAAGTAG-  95

seq1  CAAAAGGTGTTGAGTAACTTGGCTAGCTTCCAATATAGCAAGAGAAACAG  150
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CAAAGGTGTTGAGTAACTTGGCTAGCTTCCAATATAGCAAGAGAAACAG  144

seq1  CAAGGTCAATAGCTGTAAGGTTTAATTTTGGTTTAACTCGATTATGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCAATAGCTGTAAGGTTTAATTTTGGTTTAACTCGATTATGTTGA  194

seq1  AAACTTTGTTGTTCAGTCAATTATTTCACCAGAGGCAGATGCAATTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGTTGTTCAGTCAATTATTTCACCAGAGGCAGATGCAATTTCAT  244

seq1  GCTGTGTTGTAAGGGTCCCTCGTGCATTTTTTATCTAATCAACAATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTGTAAGGGTCCCTCGTGCATTTTTTATCTAATCAACAATAGAT  294

seq1  TGAATGTCAACAACTTGGTGAATAATCGAACAGCACACATTTGGGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCAACAACTTGGTGAATAATCGAACAGCACACATTTGGGAAAGA  344

seq1  ATCTTGGACTTTGCTCAGGCATATTTTTCAATAGTGAGTTGGAAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGACTTTGCTCAGGCATATTTTTCAATAGTGAGTTGGAAGAAACA  394

seq1  TTTTTGTTGTCTTAAAGACGTATAGAGACCAGGGAAGTAGGTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTCTTAAAGACGTATAGAGACCAGGGAAGTAGGTTTTTTTTT  444

seq1  GTCAAATCTTAATCTATTGAATAGGCCAAGGTTTCAGAAAGAAACTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCTTAATCTATTGAATAGGCCAAGGTTTCAGAAAGAAACTGCTT  494

seq1  GTTTGGAACCCATCAGTTGTGACTTTGAGAAAATGGGCTTTCTTTCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAACCCATCAGTTGTGACTTTGAGAAAATGGGCTTTCTTTCTTGA  544

seq1  CCTCATGTTTTCCAGATACTCATGGTGAGGGTAATAGCACTGCACTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTTTTCCAGATACTCATGGTGAGGGTAATAGCACTGCACTCTTA  594

seq1  AAAGACTTGCATTTAACCACCTTGTTCAACCATCACCTGCCTCTGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTGCATTTAACCACCTTGTTCAACCATCACCTGCCTCTGTCCAT  644

seq1  TTTGTAATATGTACTGACTGATGACTGAACACTCCAAACTCTAGACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATATGTACTGACTGATGACTGAACACTCCAAACTCTAGACACAC  694

seq1  AGAGCATTTCCTGAAAAATTATTAGTATTATTTTTTGCAAGCAAAAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTCCTGAAAAATTATTAGTATTATTTTTTGCAAGCAAAAGCCT  744

seq1  TGGCAAGAAAAGTCTGATTTATGTGGCTGTATGTGGTATTTTAATGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAAAAGTCTGATTTATGTGGCTGTATGTGGTATTTTAATGATAC  794

seq1  AATTTAATGGAATTTAAGTAAGTTGATTAAATATGAGCATGTAAATTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATGGAATTTAAGTAAGTTGATTAAATATGAGCATGTAAATTGTT  844

seq1  TTGAGGGTTTCAGAGAGGCTATAAAGATCAGGCATGAAAATTCTACAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTTTCAGAGAGGCTATAAAGATCAGGCATGAAAATTCTACAACT  894

seq1  GTCTGTGGGGAAGATGATGGCAAATGATTAGAAGCATCATAAATAGCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGGGAAGATGATGGCAAATGATTAGAAGCATCATAAATAGCTAG  944

seq1  GATTTGACAGTTAAATAGCTTCACAAATGTTTTAAACTGGCATTCCACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGACAGTTAAATAGCTTCACAAATGTTTTAAACTGGCATTCCACTT  994

seq1  TAAGTAACAAGAGCTAGACATTATAAAGATCAATTATGGTATGATTCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACAAGAGCTAGACATTATAAAGATCAATTATGGTATGATTCATA  1044

seq1  CAAGAGTAATAACTAACATCTGATCAGCAATCCAGAAACAAACAAATTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAATAACTAACATCTGATCAGCAATCCAGAAACAAACAAATTAA  1094

seq1  AAAAAAAACCCTTGGTCTTAGATAAGTATTGTTAAAATGAAATTTTAATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCTTGGTCTTAGATAAGTATTGTTAAAATGAAATTTTAATG  1144

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1151

seq1: chr7_100668386_100669185
seq2: B6Ng01-052F15.g_167_965

seq1  TGAATTTGTTTATAGAGTGGATTATATTGATGGCTTTCCATATATTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGTTTATAGAGTGGATTATATTGATGGCTTTCCATATATTAAGC  50

seq1  CATCCCTGCATCCTTGGAATGAAGACTACTTGGTCAGGATGGATGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGCATCCTTGGAATGAAGACTACTTGGTCAGGATGGATGATTGT  100

seq1  TTTGATGTGTTCTTGCATTCGGTTAGCAGGAATTTTATTGAGTAATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTGTTCTTGCATTCGGTTAGCAGGAATTTTATTGAGTAATTTTG  150

seq1  CATTGATATTCATAAGGGAAATTGGTTTGAGGTTCTCTACCTTTGTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATTCATAAGGGAAATTGGTTTGAGGTTCTCTACCTTTGTTGGG  200

seq1  TCTTTATGTGGTTTAGGTATCAGAGTAATTGTGATTTCGTAGAATGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTGGTTTAGGTATCAGAGTAATTGTGATTTCGTAGAATGAATT  250

seq1  ATGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGAGAAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGAGAAGAATTG  300

seq1  GAATTATGTCTTCTTTGCATGACTGATAGAACTCTTCACTAAACCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGTCTTCTTTGCATGACTGATAGAACTCTTCACTAAACCCATCT  350

seq1  GGTCCTGGGCTCTTTTTGGTTGGGACACTATTAATGACTACCTCTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGGCTCTTTTTGGTTGGGACACTATTAATGACTACCTCTATTTC  400

seq1  TTTAGGGGATATAGGACTGTTTAGGTCATTAATCTGATCCTGATTTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGATATAGGACTGTTTAGGTCATTAATCTGATCCTGATTTAACT  450

seq1  TTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTCATTCAGGTTCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTCATTCAGGTTCCCG  500

seq1  ACAGACATTCTTAACTCCATGCCTATCCATGTCTTATAACCACTTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTCTTAACTCCATGCCTATCCATGTCTTATAACCACTTTGTGA  550

seq1  AATGAAAATTATTTTTATTTAACATGATCGCATAACCCTGAGACACAGAT  600
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATTA-TTTTATTTAACATGATCGCATAACCCTGAGACACAGAT  599

seq1  ATAACTTCAAATCTTTGTTATTTAAATTCCATTAAATCAAGGTTAAAAAT  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATAACTTCAAATCTTTGTTATTTAAATTCCATTAAATCAA-GTTAAAAAT  648

seq1  TGTATCCCTTATCTCTCCATTGAACATTTTCCCAGATTTTCCTTCCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCTTATCTCTCCATTGAACATTTTCCCAGATTTTCCTTCCTATA  698

seq1  GATGGTATTTATAAACTATGAAGTGTCTTTTTCATTATTAGAAAATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTATTTATAAACTATGAAGTGTCTTTTTCATTATTAGAAAATATGA  748

seq1  TACATTT-GTGTAGATTCAGCGCTCAGCTGGCATATTTGCAAATCAGTCT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGGTGTAGATTCAGCGCTCAGCTGGCATATTTGCAAATCAGTCT  798

seq1  A  800
      |
seq2  A  799