BAC Information

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BAC

Clone NameB6Ng01-052J18
Chromosome7 (Build37)
Map Location 9,655,814 - 9,761,297
singlet/doubletdoublet
Overlap geneLOC100042810, LOC665593, EG665582, EG434113
Upstream geneLOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598
Downstream geneEG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J18.bB6Ng01-052J18.g
ACCDH875913DH875914
length9191,041
definitionDH875913|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J18, 5' end.DH875914|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,655,814 - 9,656,738)(9,760,250 - 9,761,297)
sequence
gaattctgtcaaatgtaaagttggtacatacccaccaaatattgggttat
agtgcatgtgtctagttttagaatcactctcactggttgctctagtgata
tcatgaagtatcatatctactgaacttccctacagtgtccataaaatctt
gcactcattcacattcttcattttctctcagagaactaaactctctaatt
attacaattttattcttcattttgctttcatggagattgccctctggtaa
ctgccaaaaaatgttgataaggcagttgaatccaccactttgtgtagaaa
aatgagatctaggaagacagggttacacataaaaaccatctaccaaaata
aataatcaatgagaaacacagactaactaaataatcagcaaagatgaaat
cagaacatattttctgatttccagtaagagcacacacataagaaaatact
tacttttttcatctgttcttcaatctactggccaatagtctaaggaggaa
atgttccttttctgctgtcaaataaaaatatattatatccaacaatgatc
agaagcccagggactctctggatgaattgggaatattgggaagaagctga
ggaggagggtgaccagcattctcaacaaacctggacaagcaagatctctc
agacattgagcctctaaccagagatcatacactagctgatgtgaagcccc
caacaaatatgcagcataagactgcctggtctagcatcagtgggagagac
acacctaaccccagagagacttaagtctccagggattgggaagggctggg
cgttggggaggtagggatatcatcttggagatgggggaggagttgttaga
tgaggaagagtcatggggcaaccgggaggggataaccccaaacgtaaaaa
aatattgagtataataaaa
gaattctttaaactgtagtgtgaatatcaaatctttctttgaaacaatgc
catcttccacgaattttcaataagtaaaatgtggatgttaatgaagaatg
tgttctttaaagggacagtgctaatgatcatatttccatgaagactgact
gagggaagtggttgtttttgttaatgcattttagacccatttggtttacc
attatgtaatgagaattgataaatgtgaaatatttactgtatctgcaaac
actcaattgtctttttgaaaagtcgttttctaaaaagcaacgtaattaaa
gcatctgcctctcattctgttttccagaattttctgagtccaggacctca
ctcagaactgcacacagagggaaatctctgaaaggaattaggttcatgca
aatgtcagtagttttgcctatcccttccataactacaatatgaatagcat
gttgacatatctacaaacttattttatttcattttttatttcttattatt
taatctttttttaacagtctagtagttatccccctcctgatctgctctcc
tgactcttcctcatctaacatctcctcccacatttccaagatgatatccc
tacatcccctacgcccagcccttcccaatccctgggaatttaagtctctc
tggggttaggtgtgtctctcccactgatgctagaccaggcagccttatgc
tgcatatttgttgggggcttcacatcagctagtgtatgatctctggttag
aggttcaatgtctgagagatcttgcttgtccgggtttgttgagactgctg
gtgtttctatgggttgtcctcctcctctgcttcttgcaactattccaatt
catccacaggggcccctggctgatgtccagtgttggatataatatatttg
tatttgacagcagaaaaggaacatctcctccttagactattgggccaata
gcttgagacagctgaaaaaatagcagtattttgttatgtgtgtgtgccta
ctgcaatcagaaaatatttctgattcatcttgctgaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9655814_9656738
seq2: B6Ng01-052J18.b_44_961

seq1  GAATTCTGTCAAATGTAAAGTTGGTACATACCCACCAAATATTGGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAAATGTAAAGTTGGTACATACCCACCAAATATTGGGTTAT  50

seq1  AGTGCATGTGTCTAGTTTTAGAATCACTCTCACTGGTTGCTCTAGTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGTGTCTAGTTTTAGAATCACTCTCACTGGTTGCTCTAGTGATA  100

seq1  TCATGAAGTATCATATCTACTGAACTTCCCTACAGTGTCCATAAAATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGTATCATATCTACTGAACTTCCCTACAGTGTCCATAAAATCTT  150

seq1  GCACTCATTCACATTCTTCATTTTCTCTCAGAGAACTAAACTCTCTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATTCACATTCTTCATTTTCTCTCAGAGAACTAAACTCTCTAATT  200

seq1  ATTACAATTTTATTCTTCATTTTGCTTTCATGGAGATTGCCCTCTGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATTTTATTCTTCATTTTGCTTTCATGGAGATTGCCCTCTGGTAA  250

seq1  CTGCCAAAAAATGTTGATAAGGCAGTTGAATCCACCACTTTGTGTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAAAATGTTGATAAGGCAGTTGAATCCACCACTTTGTGTAGAAA  300

seq1  AATGAGATCTAGGAAGACAGGGTTACACATAAAAACCATCTACCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCTAGGAAGACAGGGTTACACATAAAAACCATCTACCAAAATA  350

seq1  AATAATCAATGAGAAACACAGACTAACTAAATAATCAGCAAAGATGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAATGAGAAACACAGACTAACTAAATAATCAGCAAAGATGAAAT  400

seq1  CAGAACATATTTTCTGATTTCCAGTAAGAGCACACACATAAGAAAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATATTTTCTGATTTCCAGTAAGAGCACACACATAAGAAAATACT  450

seq1  TACTTTTTTCATCTGTTCTTCAATCTACTGGCCAATAGTCTAAGGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTCATCTGTTCTTCAATCTACTGGCCAATAGTCTAAGGAGGAA  500

seq1  ATGTTCCTTTTCTGCTGTCAAATAAAAATATATTATATCCAACAATGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTTTTCTGCTGTCAAATAAAAATATATTATATCCAACAATGATC  550

seq1  AGAAGCCCAGGGACTCTCTGGATGAATTGGGAATATTGGGAAGAAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCAGGGACTCTCTGGATGAATTGGGAATATTGGGAAGAAGCTGA  600

seq1  GGAGGAGGGTGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGTGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTC  650

seq1  AGACATTGAGCCTCTAACCAGAGATCATACACTAGCTGATGTGAAGCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGAGCCTCTAACCAGAGATCATACACTAGCTGATGTGAAGCCCC  700

seq1  CAACAAATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGAC  750

seq1  ACACCTAACCCCAGAGAGACTTAAGTCTCCAGGGATTGGGAAGGGCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAACCCCAGAGAGACTTAAGTCTCCAGGGATTGGGAAGGGCTGGG  800

seq1  CGTTGGGGAGGTAGGGATATCATCTTGGAGATGGGGGAGGAGTTGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGGGAGGTAGGGATATCATCTTGGAGATGGGGGAGGAGTTGTTAGA  850

seq1  TGAGGAAGAGTCAGGGGGCAAACCAGGAGGGGGATAACCACTAGACTGTA  900
      ||||||||||||| ||||| |||| ||| |||||||||| | | || || 
seq2  TGAGGAAGAGTCATGGGGC-AACCGGGA-GGGGATAACC-CCAAAC-GT-  895

seq1  AAAAAAAATATTGAGTAATAATAAA  925
       ||||||||||||||| ||||||||
seq2  -AAAAAAATATTGAGT-ATAATAAA  918

seq1: chr7_9760250_9761297
seq2: B6Ng01-052J18.g_69_1109 (reverse)

seq1  AATAATCAGCAAAGATGAAATCAGAATATATTTTCTGATTTCCAGTAGGC  50
      |||| ||||| |||||| |||||||| ||||||||||| || ||||||||
seq2  AATATTCAGC-AAGATG-AATCAGAA-ATATTTTCTGA-TTGCAGTAGGC  46

seq1  ACACACACATAACAAAATACTGCCTATTTTTTCAGCTGTTCTTCAAGCTA  100
      |||||||||||||||||||||| ||||||||||||||||   ||||||||
seq2  ACACACACATAACAAAATACTG-CTATTTTTTCAGCTGT--CTCAAGCTA  93

seq1  TTGG-CCAATAGTCTAAGGAGGAGATGTTCCTTTTCTGCTGTCAAATACA  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCAATAGTCTAAGGAGGAGATGTTCCTTTTCTGCTGTCAAATACA  143

seq1  AATATATTATATCCAACACTGGACATCAGCCAGGGGCCCCTGTGGATGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTATATCCAACACTGGACATCAGCCAGGGGCCCCTGTGGATGAA  193

seq1  TTGGGAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACACC  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-GGAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACACC  242

seq1  AGCAGTCTCAACAAACCCGGACAAGCAAGATCTCTCAGACATTGAACCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTCAACAAACCCGGACAAGCAAGATCTCTCAGACATTGAACCTC  292

seq1  TAACCAGAGATCATACACTAGCTGATGTGAAGCCCCCAACAAATATGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAGATCATACACTAGCTGATGTGAAGCCCCCAACAAATATGCAG  342

seq1  CATAAGGCTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCCAG  392

seq1  AGAGACTTAAATTCCCAGGGATTGGGAAGGGCTGGGCGTAGGGGATGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTAAATTCCCAGGGATTGGGAAGGGCTGGGCGTAGGGGATGTAG  442

seq1  GGATATCATCTTGGAAATGTGGGAGGAGATGTTAGATGAGGAAGAGTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCATCTTGGAAATGTGGGAGGAGATGTTAGATGAGGAAGAGTCAG  492

seq1  GAGAGCAGATCAGGAGGGGGATAACTACTAGACTGTTAAAAAAAGATTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGATCAGGAGGGGGATAACTACTAGACTGTTAAAAAAAGATTAA  542

seq1  ATAATAAGAAATAAAAAATGAAATAAAATAAGTTTGTAGATATGTCAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGAAATAAAAAATGAAATAAAATAAGTTTGTAGATATGTCAACA  592

seq1  TGCTATTCATATTGTAGTTATGGAAGGGATAGGCAAAACTACTGACATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCATATTGTAGTTATGGAAGGGATAGGCAAAACTACTGACATTT  642

seq1  GCATGAACCTAATTCCTTTCAGAGATTTCCCTCTGTGTGCAGTTCTGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAACCTAATTCCTTTCAGAGATTTCCCTCTGTGTGCAGTTCTGAGT  692

seq1  GAGGTCCTGGACTCAGAAAATTCTGGAAAACAGAATGAGAGGCAGATGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTGGACTCAGAAAATTCTGGAAAACAGAATGAGAGGCAGATGCT  742

seq1  TTAATTACGTTGCTTTTTAGAAAACGACTTTTCAAAAAGACAATTGAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACGTTGCTTTTTAGAAAACGACTTTTCAAAAAGACAATTGAGTG  792

seq1  TTTGCAGATACAGTAAATATTTCACATTTATCAATTCTCATTACATAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGATACAGTAAATATTTCACATTTATCAATTCTCATTACATAATG  842

seq1  GTAAACCAAATGGGTCTAAAATGCATTAACAAAAACAACCACTTCCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAAATGGGTCTAAAATGCATTAACAAAAACAACCACTTCCCTCA  892

seq1  GTCAGTCTTCATGGAAATATGATCATTAGCACTGTCCCTTTAAAGAACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTTCATGGAAATATGATCATTAGCACTGTCCCTTTAAAGAACAC  942

seq1  ATTCTTCATTAACATCCACATTTTACTTATTGAAAATTCGTGGAAGATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATTAACATCCACATTTTACTTATTGAAAATTCGTGGAAGATGG  992

seq1  CATTGTTTCAAAGAAAGATTTGATATTCACACTACAGTTTAAAGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTCAAAGAAAGATTTGATATTCACACTACAGTTTAAAGAATTC  1041