BAC Information

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BAC

Clone NameB6Ng01-054B06
Chromosome7 (Build37)
Map Location 7,597,081 - 7,670,402
singlet/doubletdoublet
Overlap geneEG628368, LOC100042636, LOC665485
Upstream geneZim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474
Downstream geneEG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054B06.bB6Ng01-054B06.g
ACCDH876931DH876932
length1,0281,182
definitionDH876931|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B06, 5' end.DH876932|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,597,081 - 7,598,154)(7,669,212 - 7,670,402)
sequence
gaattcacaagctcaaactccttgacatagaaactacactaaattaaaca
gatcggctgtgtgtatgtgtaaatactgatatgtgtgtgttcatgctaaa
gtagcacttgcattattgaatttaagtgattcctgtaacaagtcatgtga
agaagtttgaatagagaggaaatataatgcttatgtttgaatagcaggaa
atgttaatgaaataagccctaagaagtttgctcatctggcaataattaat
caaagttctggttattgttcatgagatgcactaattttagcacagaagga
aaaaattatctctgtagatactttgtgctaaaagatccttcatggtcctc
ttaatagtgcatagttagcattttctcatatatttgcaattttttgtctt
ctatattaatcttacagagaaaatagactttgcccctagcagtctcataa
gctaatccagtagattagatattatattcagttcttcatgggctcctatt
gtgactaaaatctaatgtaaatgtagttttacaatagattatttatttgg
aaattcttgtgcagaattcctgcaaattgcaattatattttctaaagtat
ttctttgtgagatataatcttccatgaatttgcaataagtcaatatgagg
gttaagccacaagatatgtttgtttgtttttgcaagattttgttaaggat
ttttatatctacaactagtaaatttgataactaatatattttatatctgc
agtttcctttgagttgacttcattatcccagtgtggaccaagagaaatcc
atatttgtagtatttatcagagcagcaaaaactcacttgtctcattagaa
atttcattttcagggcaggggctgcaaacaaacagcagctgccattccct
ccttccacaatcttctgaatccaggactacattccgcactgcacacagag
atggcatctgagaaaaatagacatatactgatatgagtctattatttctt
tatgtttatatagtactttagattcata
gaattcacataaaaataaatttttagaaaaggttttctttcagcaaatga
ttgaaataaaaataagaaagtgaggatagatataagggaaaatgccaaga
atattggcaactaattataagtgattattagtacagaaaccaaagtttgc
tgcaaaaagactattatgcactaataagtcctattttctctaccttaact
aattaagtgaatttcacaaaaagtatcaataacacgatgggtctcataac
acatgtatttctatgttgctcaataatttcaaaatgaagacatgttctga
attacagttttgtcaatatctgtggtttttcctttttttaacttctgatc
aagcactgaaaaacagagatgggaatgttctctgtggatgaggtcaatac
caaatcttatttatgggagaaatactgtcatgaaattgtaatctgtttac
tatttattcaatttcccaattccattttatctcacaataaaagccttttc
tttcaatcttttgaggacagaggcagaagcatccagtacagtatagtgtt
tctattgagtacaaatgatcgtgtatttacatttgtccataataattgct
gtactcttttacagaaaaacaactaaaacccacaaatatgctttggcatt
ggcgttttcaatggatgaaatcaacagaaatcctgatcttttaccaaata
tgtctttgattataaaatataatttgggccgttgtgatggaaaaactatg
acaaatacaggcgattttcctgatcagaaaaaatataagcgtatccctaa
ttatttctgtaatgaagagactatgtgttcatttctgcttacaggacccg
gtatgaccacatctttatattttcagatgttcctggacattttcttatct
ctacatgtgagttatcataggccaaggattcttagcatcacgtctctttg
gggatttgacagatattaagaaagtaatggatgagattagatgtatgctt
atgtcaatctatgtagttccagggtacttactattagagaagaggatagg
ccatctgctattggccacctcagaagttgaaagattcaagaaagaggata
gaggaagaaatgagagatagagtctgcgagggtgttggagaattgccgcc
ttgactgactgggcagtcagagggatctttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7597081_7598154
seq2: B6Ng01-054B06.b_43_1069

seq1  GAATTCACAAGCTCAAACTCCTTGACATAGAAACTACACTAAATTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGCTCAAACTCCTTGACATAGAAACTACACTAAATTAAACA  50

seq1  GATCGGCTGTGTGTATGTGTAAATACTGATATGTGTGTGTTCATGCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGCTGTGTGTATGTGTAAATACTGATATGTGTGTGTTCATGCTAAA  100

seq1  GTAGCACTTGCATTATTGAATTTAAGTGATTCCTGTAACAAGTCATGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTTGCATTATTGAATTTAAGTGATTCCTGTAACAAGTCATGTGA  150

seq1  AGAAGTTTGAATAGAGAGGAAATATAATGCTTATGTTTGAATAGCAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTGAATAGAGAGGAAATATAATGCTTATGTTTGAATAGCAGGAA  200

seq1  ATGTTAATGAAATAAGCCCTAAGAAGTTTGCTCATCTGGCAATAATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATGAAATAAGCCCTAAGAAGTTTGCTCATCTGGCAATAATTAAT  250

seq1  CAAAGTTCTGGTTATTGTTCATGAGATGCACTAATTTTAGCACAGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCTGGTTATTGTTCATGAGATGCACTAATTTTAGCACAGAAGGA  300

seq1  AAAAATTATCTCTGTAGATACTTTGTGCTAAAAGATCCTTCATGGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATCTCTGTAGATACTTTGTGCTAAAAGATCCTTCATGGTCCTC  350

seq1  TTAATAGTGCATAGTTAGCATTTTCTCATATATTTGCAATTTTTTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTGCATAGTTAGCATTTTCTCATATATTTGCAATTTTTTGTCTT  400

seq1  CTATATTAATCTTACAGAGAAAATAGACTTTGCCCCTAGCAGTCTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTAATCTTACAGAGAAAATAGACTTTGCCCCTAGCAGTCTCATAA  450

seq1  GCTAATCCAGTAGATTAGATATTATATTCAGTTCTTCATGGGCTCCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCCAGTAGATTAGATATTATATTCAGTTCTTCATGGGCTCCTATT  500

seq1  GTGACTAAAATCTAATGTAAATGTAGTTTTACAATAGATTATTTATTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAAATCTAATGTAAATGTAGTTTTACAATAGATTATTTATTTGG  550

seq1  AAATTCTTGTGCAGAATTCCTGCAAATTGCAATTATATTTTCTAAAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGTGCAGAATTCCTGCAAATTGCAATTATATTTTCTAAAGTAT  600

seq1  TTCTTTGTGAGATATAATCTTCCATGAATTTGCAATAAGTCAATATGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGAGATATAATCTTCCATGAATTTGCAATAAGTCAATATGAGG  650

seq1  GTTAAGCCACAAGATATGTTTGTTTGTTTTTGCAAGATTTTGTTAAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCCACAAGATATGTTTGTTTGTTTTTGCAAGATTTTGTTAAGGAT  700

seq1  TTTTATATCTACAACTAGTAAATTTGATAACTAATATATTTTATATCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATCTACAACTAGTAAATTTGATAACTAATATATTTTATATCTGC  750

seq1  AGTTTCCTTTGAGTTGACTTCATTATCCCAGTGTGGACCAAGAGAAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTTGAGTTGACTTCATTATCCCAGTGTGGACCAAGAGAAATCC  800

seq1  ATATTTGTAGTATTTATCAGAGCAGCAAAAACTCACTTGTCTCATTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAGTATTTATCAGAGCAGCAAAAACTCACTTGTCTCATTAGAA  850

seq1  ATTTCATTTTCAGGGCAGGGGCTGCAAACAAAACAGCAGGCTGCCATTCC  900
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  ATTTCATTTTCAGGGCAGGGGCTGCAAAC-AAACAGCA-GCTGCCATTCC  898

seq1  CTCCTTCCACAATCTTCTGAATCCAGGACTACATTCCGCACTGCACACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCACAATCTTCTGAATCCAGGACTACATTCCGCACTGCACACAG  948

seq1  AGGATGGCATCTGAGAAAAAATTAGACATATACTGATAATGAGTCTTATA  1000
      | ||||||||||||||||||  ||||||||||||||| ||||||| ||| 
seq2  A-GATGGCATCTGAGAAAAA--TAGACATATACTGAT-ATGAGTC-TAT-  992

seq1  TATTTCTTTTATGTTTTATATTAGTACTTTAAGATTTCAATAAGCTCCTT  1050
      |||||| |||||| |||||| ||||||||| ||| ||||           
seq2  TATTTC-TTTATG-TTTATA-TAGTACTTT-AGA-TTCAT----------  1027

seq1  TTTTGCACACTATCTGATTGACAT  1074
                              
seq2  ------------------------  1027

seq1: chr7_7669212_7670402
seq2: B6Ng01-054B06.g_65_1246 (reverse)

seq1  ATAAAGAATCACTCTGACTG-CCAGTCAGTCAAGGCTGCAAGATTCTCTC  49
      |||||| ||| ||||||||| ||||||||||||||| ||||     ||||
seq2  ATAAAG-ATCCCTCTGACTGCCCAGTCAGTCAAGGCGGCAA----TTCTC  45

seq1  TAACACCCTGCCAGACTCTATTCTTCATTTCCTCCTCTATTCCTTCTTTC  99
       ||||||||  ||||||||||   ||||||| ||||||||  | ||||||
seq2  CAACACCCTCGCAGACTCTATCTCTCATTTCTTCCTCTAT--CCTCTTTC  93

seq1  TGGAATCTGTCAACTTCTGGAGGTGGCATATAGCAGATGGCCTATCATC-  148
      | |||||| ||||||||| ||||||||  ||||||||||||||||| || 
seq2  TTGAATCTTTCAACTTCT-GAGGTGGCCAATAGCAGATGGCCTATCCTCT  142

seq1  TCTCTAAATAGTAAGTACACTGGAACTACATAGATTGACATAAGCATACA  198
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTCT-AATAGTAAGTACCCTGGAACTACATAGATTGACATAAGCATACA  191

seq1  TCTAATCTCATCCATTAACTTTCTTAATATCTGTCAAATCCCCCAAAGAG  248
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TCTAATCTCATCCATT-ACTTTCTTAATATCTGTCAAAT-CCCCAAAGAG  239

seq1  ACGTGATGCTAAGAATCCTTGGCCTATGATAACTCACATGTAGAGATAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATGCTAAGAATCCTTGGCCTATGATAACTCACATGTAGAGATAAG  289

seq1  AAAATGTCCAGGAACATCTGAAAATATAAAGATGTGGTCATACCGGGTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCAGGAACATCTGAAAATATAAAGATGTGGTCATACCGGGTCC  339

seq1  TGTAAGCAGAAATGAACACATAGTCTCTTCATTACAGAAATAATTAGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAGAAATGAACACATAGTCTCTTCATTACAGAAATAATTAGGGA  389

seq1  TACGCTTATATTTTTTCTGATCAGGAAAATCGCCTGTATTTGTCATAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTTATATTTTTTCTGATCAGGAAAATCGCCTGTATTTGTCATAGTT  439

seq1  TTTCCATCACAACGGCCCAAATTATATTTTATAATCAAAGACATATTTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCACAACGGCCCAAATTATATTTTATAATCAAAGACATATTTGG  489

seq1  TAAAAGATCAGGATTTCTGTTGATTTCATCCATTGAAAACGCCAATGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATCAGGATTTCTGTTGATTTCATCCATTGAAAACGCCAATGCCA  539

seq1  AAGCATATTTGTGGGTTTTAGTTGTTTTTCTGTAAAAGAGTACAGCAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTTGTGGGTTTTAGTTGTTTTTCTGTAAAAGAGTACAGCAATT  589

seq1  ATTATGGACAAATGTAAATACACGATCATTTGTACTCAATAGAAACACTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGACAAATGTAAATACACGATCATTTGTACTCAATAGAAACACTA  639

seq1  TACTGTACTGGATGCTTCTGCCTCTGTCCTCAAAAGATTGAAAGAAAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACTGGATGCTTCTGCCTCTGTCCTCAAAAGATTGAAAGAAAAGG  689

seq1  CTTTTATTGTGAGATAAAATGGAATTGGGAAATTGAATAAATAGTAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGTGAGATAAAATGGAATTGGGAAATTGAATAAATAGTAAACA  739

seq1  GATTACAATTTCATGACAGTATTTCTCCCATAAATAAGATTTGGTATTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAATTTCATGACAGTATTTCTCCCATAAATAAGATTTGGTATTGA  789

seq1  CCTCATCCACAGAGAACATTCCCATCTCTGTTTTTCAGTGCTTGATCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCACAGAGAACATTCCCATCTCTGTTTTTCAGTGCTTGATCAGA  839

seq1  AGTTAAAAAAAGGAAAAACCACAGATATTGACAAAACTGTAATTCAGAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAAAGGAAAAACCACAGATATTGACAAAACTGTAATTCAGAAC  889

seq1  ATGTCTTCATTTTGAAATTATTGAGCAACATAGAAATACATGTGTTATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCATTTTGAAATTATTGAGCAACATAGAAATACATGTGTTATGA  939

seq1  GACCCATCGTGTTATTGATACTTTTTGTGAAATTCACTTAATTAGTTAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATCGTGTTATTGATACTTTTTGTGAAATTCACTTAATTAGTTAAG  989

seq1  GTAGAGAAAATAGGACTTATTAGTGCATAATAGTCTTTTTGCAGCAAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAAATAGGACTTATTAGTGCATAATAGTCTTTTTGCAGCAAACT  1039

seq1  TTGGTTTCTGTACTAATAATCACTTATAATTAGTTGCCAATATTCTTGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTGTACTAATAATCACTTATAATTAGTTGCCAATATTCTTGGC  1089

seq1  ATTTTCCCTTATATCTATCCTCACTTTCTTATTTTTATTTCAATCATTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTTATATCTATCCTCACTTTCTTATTTTTATTTCAATCATTTG  1139

seq1  CTGAAAGAAAACCTTTTCTAAAAATTTATTTTTATGTGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAAAACCTTTTCTAAAAATTTATTTTTATGTGAATTC  1182