BAC Information

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BAC

Clone NameB6Ng01-054L13
Chromosome7 (Build37)
Map Location 104,743,602 - 104,842,911
singlet/doubletdoublet
Overlap geneRsf1, LOC622994
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik
Downstream geneLOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L13.bB6Ng01-054L13.g
ACCDH877391DH877392
length1,1541,012
definitionDH877391|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L13, 5' end.DH877392|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,841,731 - 104,842,911)(104,743,602 - 104,744,617)
sequence
gaattcagttgttgccacagagcctgctggcttcttggaatttctcttag
aaactagtgacatttttgtaagaacttttaaatacagtttaataattcca
tgacctgttcattttaaacaccgaaagtcgagcaagagataattagaaga
cagattaaataggaacatacccatctctttcatgcttcagagaagaacat
tatataaagaagaatactcagaagaatggagatgagagacaaagagaact
gaaaagagaaaggctcaaaagcaataggaaagctaccaggtcacagacac
agacaggggttagaatcttctaggggttaggctagaaagatggaaactga
gtcaggtggctctgaaatgggcaagaggtactggacagggaaggtggtct
gtaccacaagcttgtcttgtaggttctagctaactttccctagagatgac
tgtatgcactagtgatgtatacactaggccacatcctcttagtgctcttt
ctctgattgtcgtttagactttgaataaccttgaacttattgtcagaatt
actcaaggctttatctcatccagaaggctcctaacatctaacatttaatt
tcattaaaatagttttattataattccacatcgactaaataattaccatt
tagtgctttaaagcttagtttttaaaatgaaccatcctcaggtctcttaa
tcgaagataaaagttgacagctaagttctagccccatgctcagctaagac
tcttaaatgttagggctaggtttggaaaggtggcttagcacttaagagta
gaagccaatctttcagaggacaagggctctaatctcagcacccacatggt
ggctcatacctgtctagtgtaggggatccactgccctcttaggacgtcca
agtacaccatgcgtgtatattgttaaacaggcatacatgcagataaatac
ccacatacaaagatttttaaaagataaaaacaaaaaacagaaaactatta
gcctgtcatgacactgtcatttcctagctgattgctttaaatctcaaatg
cctcataacattatgacgaccagaacagcatcatccatacaggtgaaatc
tgattccaactcttcttcataaatgttatggtagttcagttagatcacgg
acta
gaattcaggactctcaaagctccacaatggcgcccagctctcctcagcaa
cagactgaaggcttcgggcaaatttcagctggttagcaccatggtggaca
ggcttgccttaagttgcacccttaggaatgggcatttgcgaccaccacgg
tggacatgaatcctgtaaatgacatagccttgcttagccttgtaccccag
tcttcgagctttatcaggccgggtggggcggggagccctgtgcagcgcag
agagctggcggtattgccagcagcggaccctcagaagaaagcgcatctcg
tcggactgcttcttcctccatagctcctggatgtatttgtatgcacccat
cttggctcacctgatggctgccgccagaggaaaggcaatttttgtaattt
taagaaaaaaatttattagtgttgattgtgatcaactagtttatcttttc
tgtctggtttttgttttagtttctctacttataacctggtttggtttgcc
atgataactggatcttacccctttcctgttttcttgtattttagacatct
atcatccttaattatcttctccatacttatttatttgttacattggagat
gcccagggtctcatgcatatagatgactctgatgaccactgagctgcccc
tctgcttttcattttgatgcagtgtacttttctattcctgtgggtatata
gaggtcaaaggacaactcctgggacttggttcttgcttgccagtttttgg
aattagggtaccaaactgaggttatcacgctggtgtgcaagcaccctttc
tttcccttttatatgtctgtgtaccataagcatgcatgcagtcagtgtcc
atggagacaggaaggtttgaatccctgggactggatggagtacagaccat
tgtgagctgccttgtggatgctgggggattgagcccaatttctctgacaa
tagcctgagctcttaccatcgccccttttctttttaaagtggtgtttttt
ctgagtgtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104841731_104842911
seq2: B6Ng01-054L13.b_48_1201 (reverse)

seq1  TAGTACGTGAAATTCTAACCTGAAACTACCAATTAACATTTATATGAAGA  50
      |||| |||||   ||||| ||| ||||||||  |||||||  ||||||| 
seq2  TAGTCCGTGA---TCTAA-CTG-AACTACCA--TAACATT--TATGAAG-  40

seq1  AAGAGTGTGAATCAAGATTTCA-CTGTATGGGATGAATGCTGGTTTCTGG  99
      ||||||  ||||| |||||||| |||||| ||||| ||||||  ||||||
seq2  AAGAGTTGGAATC-AGATTTCACCTGTAT-GGATG-ATGCTG--TTCTGG  85

seq1  TCTGTCATAATGTTTATGAGCAATTTGAGATTTTTAAAGCAATCAGCTAG  149
      || ||||||||| |||||||  ||||||||  ||||||||||||||||||
seq2  TC-GTCATAATG-TTATGAGGCATTTGAGA--TTTAAAGCAATCAGCTAG  131

seq1  GAAATGACAGTGTCATGACAGGCTTAATAGTTTTTCTTGTTTTTTTGTTT  199
      ||||||||||||||||||||||| ||||||||||   ||||||||   ||
seq2  GAAATGACAGTGTCATGACAGGC-TAATAGTTTT--CTGTTTTTT--GTT  176

seq1  TTTATCTTTTTAAAAATCTTTTTGTATGTGGGTATTTTATCTGCATGTAT  249
      |||||| |||||||||||  |||||||||||||| |||||||||||||||
seq2  TTTATC-TTTTAAAAATC--TTTGTATGTGGGTA-TTTATCTGCATGTAT  222

seq1  GCCTGTTTAACAATATACACGCATGGTGTACTTGGACGTCCTAAGAGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTAACAATATACACGCATGGTGTACTTGGACGTCCTAAGAGGGC  272

seq1  AGTGGATCCCCTACACTAGACAGGTATGAGCCACCATGTGGGTGCTGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCCCCTACACTAGACAGGTATGAGCCACCATGTGGGTGCTGAGA  322

seq1  TTAGAGCCCTTGTCCTCTGAAAGATTGGCTTCTACTCTTAAGTGCTAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCCTTGTCCTCTGAAAGATTGGCTTCTACTCTTAAGTGCTAAGC  372

seq1  CACCTTTCCAAACCTAGCCCTAACATTTAAGAGTCTTAGCTGAGCATGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCCAAACCTAGCCCTAACATTTAAGAGTCTTAGCTGAGCATGGG  422

seq1  GCTAGAACTTAGCTGTCAACTTTTATCTTCGATTAAGAGACCTGAGGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACTTAGCTGTCAACTTTTATCTTCGATTAAGAGACCTGAGGATG  472

seq1  GTTCATTTTAAAAACTAAGCTTTAAAGCACTAAATGGTAATTATTTAGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTAAAAACTAAGCTTTAAAGCACTAAATGGTAATTATTTAGTC  522

seq1  GATGTGGAATTATAATAAAACTATTTTAATGAAATTAAATGTTAGATGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAATTATAATAAAACTATTTTAATGAAATTAAATGTTAGATGTT  572

seq1  AGGAGCCTTCTGGATGAGATAAAGCCTTGAGTAATTCTGACAATAAGTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTTCTGGATGAGATAAAGCCTTGAGTAATTCTGACAATAAGTTC  622

seq1  AAGGTTATTCAAAGTCTAAACGACAATCAGAGAAAGAGCACTAAGAGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATTCAAAGTCTAAACGACAATCAGAGAAAGAGCACTAAGAGGAT  672

seq1  GTGGCCTAGTGTATACATCACTAGTGCATACAGTCATCTCTAGGGAAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTAGTGTATACATCACTAGTGCATACAGTCATCTCTAGGGAAAGT  722

seq1  TAGCTAGAACCTACAAGACAAGCTTGTGGTACAGACCACCTTCCCTGTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGAACCTACAAGACAAGCTTGTGGTACAGACCACCTTCCCTGTCC  772

seq1  AGTACCTCTTGCCCATTTCAGAGCCACCTGACTCAGTTTCCATCTTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCTTGCCCATTTCAGAGCCACCTGACTCAGTTTCCATCTTTCTA  822

seq1  GCCTAACCCCTAGAAGATTCTAACCCCTGTCTGTGTCTGTGACCTGGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACCCCTAGAAGATTCTAACCCCTGTCTGTGTCTGTGACCTGGTAG  872

seq1  CTTTCCTATTGCTTTTGAGCCTTTCTCTTTTCAGTTCTCTTTGTCTCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTATTGCTTTTGAGCCTTTCTCTTTTCAGTTCTCTTTGTCTCTCA  922

seq1  TCTCCATTCTTCTGAGTATTCTTCTTTATATAATGTTCTTCTCTGAAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTCTTCTGAGTATTCTTCTTTATATAATGTTCTTCTCTGAAGCA  972

seq1  TGAAAGAGATGGGTATGTTCCTATTTAATCTGTCTTCTAATTATCTCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGATGGGTATGTTCCTATTTAATCTGTCTTCTAATTATCTCTTG  1022

seq1  CTCGACTTTCGGTGTTTAAAATGAACAGGTCATGGAATTATTAAACTGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTTTCGGTGTTTAAAATGAACAGGTCATGGAATTATTAAACTGTA  1072

seq1  TTTAAAAGTTCTTACAAAAATGTCACTAGTTTCTAAGAGAAATTCCAAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTCTTACAAAAATGTCACTAGTTTCTAAGAGAAATTCCAAGA  1122

seq1  AGCCAGCAGGCTCTGTGGCAACAACTGAATTC  1181
      ||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGGCTCTGTGGCAACAACTGAATTC  1154

seq1: chr7_104743602_104744617
seq2: B6Ng01-054L13.g_68_1079

seq1  GAATTCAGGACTCTCAAAGCTCCACAATGGCGCCCAGCTCTCCTCAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTCTCAAAGCTCCACAATGGCGCCCAGCTCTCCTCAGCAA  50

seq1  CAGACTGAAGGCTTCGGGCAAATTTCAGCTGGTTAGCACCATGGTGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAAGGCTTCGGGCAAATTTCAGCTGGTTAGCACCATGGTGGACA  100

seq1  GGCTTGCCTTAAGTTGCACCCTTAGGAATGGGCATTTGCGACCACCACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCTTAAGTTGCACCCTTAGGAATGGGCATTTGCGACCACCACGG  150

seq1  TGGACATGAATCCTGTAAATGACATAGCCTTGCTTAGCCTTGTACCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGAATCCTGTAAATGACATAGCCTTGCTTAGCCTTGTACCCCAG  200

seq1  TCTTCGAGCTTTATCAGGCCGGGTGGGGCGGGGAGCCCTGTGCAGCGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGAGCTTTATCAGGCCGGGTGGGGCGGGGAGCCCTGTGCAGCGCAG  250

seq1  AGAGCTGGCGGTATTGCCAGCAGCGGACCCTCAGAAGAAAGCGCATCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGCGGTATTGCCAGCAGCGGACCCTCAGAAGAAAGCGCATCTCG  300

seq1  TCGGACTGCTTCTTCCTCCATAGCTCCTGGATGTATTTGTATGCACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACTGCTTCTTCCTCCATAGCTCCTGGATGTATTTGTATGCACCCAT  350

seq1  CTTGGCTCACCTGATGGCTGCCGCCAGAGGAAAGGCAATTTTTGTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCACCTGATGGCTGCCGCCAGAGGAAAGGCAATTTTTGTAATTT  400

seq1  TAAGAAAAAAATTTATTAGTGTTGATTGTGATCAACTAGTTTATCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAAATTTATTAGTGTTGATTGTGATCAACTAGTTTATCTTTTC  450

seq1  TGTCTGGTTTTTGTTTTAGTTTCTCTACTTATAACCTGGTTTGGTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTTTTTGTTTTAGTTTCTCTACTTATAACCTGGTTTGGTTTGCC  500

seq1  ATGATAACTGGATCTTACCCCTTTCCTGTTTTCTTGTATTTTAGACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACTGGATCTTACCCCTTTCCTGTTTTCTTGTATTTTAGACATCT  550

seq1  ATCATCCTTAATTATCTTCTCCATACTTATTTATTTGTTACATTGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTTAATTATCTTCTCCATACTTATTTATTTGTTACATTGGAGAT  600

seq1  GCCCAGGGTCTCATGCATATAGATGACTCTGATGACCACTGAGCTGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGTCTCATGCATATAGATGACTCTGATGACCACTGAGCTGCCCC  650

seq1  TCTGCTTTTCATTTTGATGCAGTGTACTTTTCTATTCCTGTGGGTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTCATTTTGATGCAGTGTACTTTTCTATTCCTGTGGGTATATA  700

seq1  GAGGTCAAAGGACAACTCCTGGGACTTGGTTCTTGCTTGCCAGTTTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAAAGGACAACTCCTGGGACTTGGTTCTTGCTTGCCAGTTTTTGG  750

seq1  AATTAGGGTACCAAACTGAGGTTATCAGGCTGGTGTGCAAGCACCCTTTC  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTAGGGTACCAAACTGAGGTTATCACGCTGGTGTGCAAGCACCCTTTC  800

seq1  TTTCCCTTTTATATGTCTGTGTACCATAAGCATGCATGCAGTCAGTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTTATATGTCTGTGTACCATAAGCATGCATGCAGTCAGTGTCC  850

seq1  ATGGAGACAGGAAGGTTTGAATCCCTGGGACTGGATGGAGTACAGACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACAGGAAGGTTTGAATCCCTGGGACTGGATGGAGTACAGACCAT  900

seq1  TGTGAGCTGCCTTGTGGATGCTGGGGGATTGAGCCCAATTTCTCTGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGTGAGCTGCCTTGTGGATGCTGGGGGATTGAGCCCAATTTCTCTGAC--  948

seq1  AATAGCCTGAGCTCTTAACCAATCGCCCCCTTTTCTTTTTAAAGTGGTG-  999
      |||||||||||||||||  | |||| ||||||||||||||||||||||| 
seq2  AATAGCCTGAGCTCTTA--CCATCG-CCCCTTTTCTTTTTAAAGTGGTGT  995

seq1  TGTGTCTGAGTGTGTTT  1016
      | | |||||||||||||
seq2  TTTTTCTGAGTGTGTTT  1012