BAC Information

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BAC

Clone NameB6Ng01-055M17
Chromosome7 (Build37)
Map Location 25,012,486 - 25,046,745
singlet/doubletdoublet
Overlap geneZfp109, Zfp108
Upstream geneLOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111
Downstream geneZfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M17.bB6Ng01-055M17.g
ACCDH878143DH878144
length1,2011,071
definitionDH878143|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M17, 5' end.DH878144|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,012,486 - 25,013,469)(25,045,669 - 25,046,745)
sequence
gaattctgaagcttctagcatatttcctatcaatagctaatcaatttcat
cactgccttgtactagagggcctgatgggcctccatgggatctgatgtgt
tatatacaatggatggtttcctcttctgatcaattattgtagttgagtaa
acagtgaggtcaattttgaatcatcctgagtaagctcagcagtttctata
ggcaaaacaattcttagtaagaaattcaggaaaatctaacaataccctga
ggatggtatacaactctgatttttgagctgaatcatatttgtgctttgaa
tgacttcggcttaattttttctcacatgtcagaaaaattccaaattgttt
gcattagtataagatgtaagagcttcaggaattggtgttctttttactat
atggaggggggagagaactaaagtcacttgcttttaggatatttgctgtt
aatttctcccaaatagatactgcaacctctttaccaattcttgattgcct
ataatgatacaaattcagcgttagtatgaggcacgatttctgctagatct
gctcctgacacctgacaattcttccttttataactaattcagatatttca
gatattaaattagatagaaaattagaaatccgatcttctctatataagtt
ttgaatttgtttactttgtattctaagatccattctaaaatacggtcttc
cctttgcataatgaaatgaggtacagtaagataaagacttcatgggaaaa
taaccaaaatataatccccagtgaaatctgctaacgcttctgggtttaag
ggaggcttttaacaagcagcagcatggagcccacccgacagcagaacaac
ctagagattcgctgcactgtggaccctctggtgtttgacgagatgcgatc
tctggctgaagcctttgcagcagtgccgcagatgtagggcctttcccagt
gtggacccgccgtgtctttcgaagagtgagggctgactgaaacccttcca
cactcccacacgtgtaggttctcttcttgtggactattctggtgagactc
agccccgacgctgctgattcttccacactcctcacactgacgcttctccg
gtgtggttcctgtgactggaatggactctggcgtaagcctccacagcgtc
gcattgtagcctcatcgtcatctggatcgaaagatccggctaaagtcttt
c
gaattctctgatggacttggagaccggacctctggctgaagactttccca
cacgtgtcacatttgtagggcttctcccctgtgtgtaccctctcgtggtc
ctggaggattgaggcctgacggaaccttttctggcacacattgcatttga
atggtctctcgcctgtgtggacactctgatgggcctgcagacttgaggca
tgactgaagcctttcccacactccacacacatatacggtttctctcctgt
gtggactctctggtgattgtgaaggctccaggtgaaatgcttcccacaca
catcacatctgtatggcttttccctggtatgaactctctgatgggcttga
aaattcgagctctgactgaagccctttccacatacactgcagacaaatgg
cttctctcctgtatggaccctctggtgtctttggaagcttgaggctgaac
tgaaatccttcccacactcttcacatttatatggcttctctcctgtgtgg
acccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccaca
ctcattacactcatacggtttctcctcagtgtggactctctggtgggtgt
ggaggttccagctacagctgaagcgtttgccacagtctccacacttatat
ggcttctctcctgtgtgaattctctcgtgtatctggagatggtcccactt
tgtgaagcccttcccacacacctcacacttgtaaagtttctctccagtgt
gcactcggcggtggatgttgagatccgagctgcggctgaagcccttccac
agctgtcgcacctgtagggcttctcccctgtgtgcactctctggtgagtc
tgaagagttgagctgtgactgaaacctttgccacactcgtgacacagtag
cgctttgttcttagatgaacacttggttgaatgaggacactggggctctg
cctggtgttcttgtgagtactatgcacagggacttctttctagagggtct
tgttgatgaagttccagactagggctgtcactgagacttcttggcccttg
ctgcactggtagccttctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25012486_25013469
seq2: B6Ng01-055M17.b_319_1249

seq1  TTTTGAGCTGAATCATATTTGTGCTTTGAATGACTTCGGCTTAATTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCTGAATCATATTTGTGCTTTGAATGACTTCGGCTTAATTTTTT  50

seq1  CTCACATGTCAGAAAAATTCCAAATTGTTTGCATTAGTATAAGATGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTCAGAAAAATTCCAAATTGTTTGCATTAGTATAAGATGTAAG  100

seq1  AGCTTCAGGAATTGGTGTTCTTTTTACTATATGGAGGGGGGAGAGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGGAATTGGTGTTCTTTTTACTATATGGAGGGGGGAGAGAACTA  150

seq1  AAGTCACTTGCTTTTAGGATATTTGCTGTTAATTTCTCCCAAATAGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTGCTTTTAGGATATTTGCTGTTAATTTCTCCCAAATAGATAC  200

seq1  TGCAACCTCTTTACCAATTCTTGATTGCCTATAATGATACAAATTCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCTCTTTACCAATTCTTGATTGCCTATAATGATACAAATTCAGCG  250

seq1  TTAGTATGAGGCACGATTTCTGCTAGATCTGCTCCTGACACCTGACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGAGGCACGATTTCTGCTAGATCTGCTCCTGACACCTGACAATT  300

seq1  CTTCCTTTTATAACTAATTCAGATATTTCAGATATTAAATTAGATAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTATAACTAATTCAGATATTTCAGATATTAAATTAGATAGAAA  350

seq1  ATTAGAAATCCGATCTTCTCTATATAAGTTTTGAATTTGTTTACTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATCCGATCTTCTCTATATAAGTTTTGAATTTGTTTACTTTGTA  400

seq1  TTCTAAGATCCATTCTAAAATACGGTCTTCCCTTTGCATAATGAAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGATCCATTCTAAAATACGGTCTTCCCTTTGCATAATGAAATGAG  450

seq1  GTACAGTAAGATAAAGACTTCATGGGAAAATAACCAAAATATAATCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTAAGATAAAGACTTCATGGGAAAATAACCAAAATATAATCCCCA  500

seq1  GTGAAATCTGCTAACGCTTCTGGGTTTAAGGGAGGCTTTTAACAAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTGCTAACGCTTCTGGGTTTAAGGGAGGCTTTTAACAAGCAGC  550

seq1  AGCATGGAGCCCACCCGACAGCAGAACAAACCTAGAGATTCGCTGCACTG  600
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCATGGAGCCCACCCGACAGCAGAAC-AACCTAGAGATTCGCTGCACTG  599

seq1  TGGACCCTCTGGTGTTTGACGAGATGCGATCTCTGGCTGAAGCCTTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCTCTGGTGTTTGACGAGATGCGATCTCTGGCTGAAGCCTTTGCA  649

seq1  GCAGGTGCCGCAGATGTAGGGCCTTTCCCCAGTGTGGACCCGCCGGTGTC  700
      ||| |||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GCA-GTGCCGCAGATGTAGGGCCTTT-CCCAGTGTGGACCCGCC-GTGTC  696

seq1  TTTCGAAGAGTGAGGGCTGACTGAAACCCTTCCCACACTCCCAACACGTG  750
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TTTCGAAGAGTGAGGGCTGACTGAAACCCTT-CCACACTCCC-ACACGTG  744

seq1  TAGGGTTTCTCTTCCTTGTGGACTA-TCTGGTGAGAACTCAGCCCCGAAC  799
      ||||  ||||||| ||||||||||| ||||||||| ||||||||||| ||
seq2  TAGG--TTCTCTT-CTTGTGGACTATTCTGGTGAG-ACTCAGCCCCG-AC  789

seq1  GCTGCCTGAATTCCTTCCCACACTCCTCACACTTGAACGGCTTCTCCCCG  849
      |||| ||| ||||  | ||||||||||||||| |||   ||||||  |||
seq2  GCTG-CTG-ATTC--TTCCACACTCCTCACAC-TGA--CGCTTCT--CCG  830

seq1  GTGTGAGTTCTCTGGTGGACTTGGAGATGGGCCCTCTGGCTGAAGGCTTT  899
      ||||| |||| |||   ||| |||| ||||   |||||||  ||| ||  
seq2  GTGTG-GTTC-CTG--TGAC-TGGA-ATGG--ACTCTGGCGTAAGCCT--  870

seq1  CCCACAGCTGTCGCATTTGTAGGGCTTCTCTCCCGTGTGCATTCTCTGGT  949
       ||||||| |||||| ||||||     |||  |   || ||   ||||| 
seq2  -CCACAGC-GTCGCA-TTGTAG----CCTCATC---GT-CA---TCTGG-  905

seq1  GAATCTGAAGATATGAGCTCCGGCTAAAGTCTTTC  984
        |||  ||||       |||||||||||||||||
seq2  --ATCGAAAGA-------TCCGGCTAAAGTCTTTC  931

seq1: chr7_25045669_25046745
seq2: B6Ng01-055M17.g_66_1136 (reverse)

seq1  AACAGAAGGCCTACCAGTGCAGCAAGGGCCAAGAAGTCTTCAGTGACAGC  50
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  AACAGAAGG-CTACCAGTGCAGCAAGGGCCAAGAAGTC-TCAGTGACAGC  48

seq1  CCTAGTCTGGAACTTCATCAAC-AGACCCTCTTAGGAAAGAAGTCCCCTG  99
      |||||||||||||||||||||| |||||||||   ||||||||| |||||
seq2  CCTAGTCTGGAACTTCATCAACAAGACCCTCT--AGAAAGAAGT-CCCTG  95

seq1  TGCATAGTACTCACAAGGACACCAGGCAGAGCCCCAGTGTCCTCATTCAA  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCATAGTACTCACAAGAACACCAGGCAGAGCCCCAGTGTCCTCATTCAA  145

seq1  CCAAGTGTTCATCTAGGAACAAAGCGCTACTGGTGTCACGAGTGTGGCAA  199
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  CCAAGTGTTCATCTAAGAACAAAGCGCTACT-GTGTCACGAGTGTGGCAA  194

seq1  AGGTTTCAGTCACAGCTCAACTCTTCAGACTCACCAGAGAGTGCACACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAGTCACAGCTCAACTCTTCAGACTCACCAGAGAGTGCACACAG  244

seq1  GGGAGAAGCCCTACAGGTGCGACAGCTGTGGGAAGGGCTTCAGCCGCAGC  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGAGAAGCCCTACAGGTGCGACAGCTGT-GGAAGGGCTTCAGCCGCAGC  293

seq1  TCGGATCTCAACATCCACCGCCGAGTGCACACTGGAGAGAAACTTTACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATCTCAACATCCACCGCCGAGTGCACACTGGAGAGAAACTTTACAA  343

seq1  GTGTGAGGTGTGTGGGAAGGGCTTCACAAAGTGGGACCATCTCCAGATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGTGTGTGGGAAGGGCTTCACAAAGTGGGACCATCTCCAGATAC  393

seq1  ACGAGAGAATTCACACAGGAGAGAAGCCATATAAGTGTGGAGACTGTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGAATTCACACAGGAGAGAAGCCATATAAGTGTGGAGACTGTGGC  443

seq1  AAACGCTTCAGCTGTAGCTGGAACCTCCACACCCACCAGAGAGTCCACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTTCAGCTGTAGCTGGAACCTCCACACCCACCAGAGAGTCCACAC  493

seq1  TGAGGAGAAACCGTATGAGTGTAATGAGTGTGGGAAGCGCTTCAGCTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAAACCGTATGAGTGTAATGAGTGTGGGAAGCGCTTCAGCTTGA  543

seq1  GCTTCAACCTCCACAGCCATCAGCGGGTCCACACAGGAGAGAAGCCATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACCTCCACAGCCATCAGCGGGTCCACACAGGAGAGAAGCCATAT  593

seq1  AAATGTGAAGAGTGTGGGAAGGATTTCAGTTCAGCCTCAAGCTTCCAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAAGAGTGTGGGAAGGATTTCAGTTCAGCCTCAAGCTTCCAAAG  643

seq1  ACACCAGAGGGTCCATACAGGAGAGAAGCCATTTGTCTGCAGTGTATGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAGGGTCCATACAGGAGAGAAGCCATTTGTCTGCAGTGTATGTG  693

seq1  GAAAGGGCTTCAGTCAGAGCTCGAATTTTCAAGCCCATCAGAGAGTTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCTTCAGTCAGAGCTCGAATTTTCAAGCCCATCAGAGAGTTCAT  743

seq1  ACCAGGGAAAAGCCATACAGATGTGATGTGTGTGGGAAGCATTTCACCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGAAAAGCCATACAGATGTGATGTGTGTGGGAAGCATTTCACCTG  793

seq1  GAGCCTTCACAATCACCAGAGAGTCCACACAGGAGAGAAACCGTATATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCACAATCACCAGAGAGTCCACACAGGAGAGAAACCGTATATGT  843

seq1  GTGTGGAGTGTGGGAAAGGCTTCAGTCATGCCTCAAGTCTGCAGGCCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGTGTGGGAAAGGCTTCAGTCATGCCTCAAGTCTGCAGGCCCAT  893

seq1  CAGAGTGTCCACACAGGCGAGAGACCATTCAAATGCAATGTGTGCCAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTCCACACAGGCGAGAGACCATTCAAATGCAATGTGTGCCAGAA  943

seq1  AAGGTTCCGTCAGGCCTCAATCCTCCAGGACCACGAGAGGGTACACACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCGTCAGGCCTCAATCCTCCAGGACCACGAGAGGGTACACACAG  993

seq1  GGGAGAAGCCCTACAAATGTGACACGTGTGGGAAAGTCTTCAGCCAGAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCCCTACAAATGTGACACGTGTGGGAAAGTCTTCAGCCAGAGG  1043

seq1  TCCGGTCTCCAAGTCCATCAGAGAATTC  1077
      ||||||||||||||||||||||||||||
seq2  TCCGGTCTCCAAGTCCATCAGAGAATTC  1071