BAC Information

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BAC

Clone NameB6Ng01-055P05
Chromosome7 (Build37)
Map Location 80,598,344 - 80,727,153
singlet/doubletdoublet
Overlap geneChd2, 1810026B05Rik
Upstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma
Downstream geneEG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055P05.bB6Ng01-055P05.g
ACCDH878258DH878259
length1,261168
definitionDH878258|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P05, 5' end.DH878259|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,598,344 - 80,599,642)(80,726,986 - 80,727,153)
sequence
gaattcactaaaggtaaaagccccagaaaaggttcaaacagttcaagtac
aaaaatatacttaacattaaagatgacgacagtataacacctgaaaatta
cgaatctaaactcagaaaaagcttaaaatattgttgatctagccaatcaa
agtatgatctagcttgtctctagaacttagtatttcatgtatcacattcc
tgccatactatctacagagtgatactgtatacttgaaatactattgtata
aaaataccaaatggaagtgcagtgatttttttcatgtaagttttacttat
tgtgcacacatgcacacagaacacagctagggaggacctaagcagcagcc
cacacaaaggctggctatgcaagctggttttaagcttaggttttctcttt
tctgactcctcatcctggggaggtaaagaaaagaaacttccaatggattc
attagcaacttggggtttttcagtgagccagtgtaatcaaaactgaagtc
caatttctgaaattagtttggaatgcaacagcccgctcctggaatccatt
atcacagccacccagtcagatacctaaacatgagaactatggccccaact
gaggacacagaataggaaagagtaaaggcaggtctggaccactgccagtc
caaagagatgaagactacaatactggtacaatacttaagtggaattgtaa
gaaatgtgccaagatattgcgttcaatcactagatgaacattttgttctt
agcaagcaacctgccctatgaaaccccaaagcgtgtctaagcatgagagg
gcaggatgctctctcagcagggttccaggctgctctggggaagccggctg
atactgcatgcactcgctcacctcctctccgctggccacggtgcccttct
tctccagacccttctgagcagcttcagcaagtagtcactcgggtctgcag
ctgcttccctgcggcttttatccgtctccactggtagatcttcaacagga
aaggaagagagcacacgcaccacccacagcccggttagtgaatccggaca
atagaagacaacaagatcagcacattcttcctccgaccttccaaaacaca
gattaaggcctcagattcttttctcatgtcatggctccagtcactgaatt
ctcatgagcatctcgtttacaaatggatggaaaatcagctccccactggt
cctaactgggcgttacgggtaaatcaggtaagagagcctttgctctatct
gctagagcatc
ccaaagcgctcagccagctagcctgatatgcacagttgaaaacagcaaat
acaccctgtccaaagcagggtggaaaaggggggacagcatgtgagtctgc
actgacccccaatacacaaacacacacacacacacatacacacgggggag
gggagagagagggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_80598344_80599642
seq2: B6Ng01-055P05.b_46_1306

seq1  GAATTCACTAAAGGTAAAAGCCCCAGAAAAGGTTCAAACAGTTCAAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAGGTAAAAGCCCCAGAAAAGGTTCAAACAGTTCAAGTAC  50

seq1  AAAAATATACTTAACATTAAAGATGACGACAGTATAACACCTGAAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACTTAACATTAAAGATGACGACAGTATAACACCTGAAAATTA  100

seq1  CGAATCTAAACTCAGAAAAAGCTTAAAATATTGTTGATCTAGCCAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCTAAACTCAGAAAAAGCTTAAAATATTGTTGATCTAGCCAATCAA  150

seq1  AGTATGATCTAGCTTGTCTCTAGAACTTAGTATTTCATGTATCACATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGATCTAGCTTGTCTCTAGAACTTAGTATTTCATGTATCACATTCC  200

seq1  TGCCATACTATCTACAGAGTGATACTGTATACTTGAAATACTATTGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACTATCTACAGAGTGATACTGTATACTTGAAATACTATTGTATA  250

seq1  AAAATACCAAATGGAAGTGCAGTGATTTTTTTCATGTAAGTTTTACTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCAAATGGAAGTGCAGTGATTTTTTTCATGTAAGTTTTACTTAT  300

seq1  TGTGCACACATGCACACAGAACACAGCTAGGGAGGACCTAAGCAGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACACATGCACACAGAACACAGCTAGGGAGGACCTAAGCAGCAGCC  350

seq1  CACACAAAGGCTGGCTATGCAAGCTGGTTTTAAGCTTAGGTTTTCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAGGCTGGCTATGCAAGCTGGTTTTAAGCTTAGGTTTTCTCTTT  400

seq1  TCTGACTCCTCATCCTGGGGAGGTAAAGAAAAGAAACTTCCAATGGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCTCATCCTGGGGAGGTAAAGAAAAGAAACTTCCAATGGATTC  450

seq1  ATTAGCAACTTGGGGTTTTTCAGTGAGCCAGTGTAATCAAAACTGAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAACTTGGGGTTTTTCAGTGAGCCAGTGTAATCAAAACTGAAGTC  500

seq1  CAATTTCTGAAATTAGTTTGGAATGCAACAGCCCGCTCCTGGAATCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTGAAATTAGTTTGGAATGCAACAGCCCGCTCCTGGAATCCATT  550

seq1  ATCACAGCCACCCAGTCAGATACCTAAACATGAGAACTATGGCCCCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCCACCCAGTCAGATACCTAAACATGAGAACTATGGCCCCAACT  600

seq1  GAGGACACAGAATAGGAAAGAGTAAAGGCAGGTCTGGACCACTGCCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACAGAATAGGAAAGAGTAAAGGCAGGTCTGGACCACTGCCAGTC  650

seq1  CAAAGAGATGAAGACTACAATACTGGTACAATACTTAAGTGGAATTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGATGAAGACTACAATACTGGTACAATACTTAAGTGGAATTGTAA  700

seq1  GAAATGTGCCAAGATATTGCGTTCAATCACTAGATGAACATTTTGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGCCAAGATATTGCGTTCAATCACTAGATGAACATTTTGTTCTT  750

seq1  AGCAAGCAACCTGCCCTATGAAACCCCAAAGCGTGTCTAAGCATGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAACCTGCCCTATGAAACCCCAAAGCGTGTCTAAGCATGAGAGG  800

seq1  GCAGGATGCTCTCTCAGCAGGGTTCCAGGCTGCCCTGGGGAAGCCGGCTG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGGATGCTCTCTCAGCAGGGTTCCAGGCTGCTCTGGGGAAGCCGGCTG  850

seq1  ATACTGCATGCACTCGCTCACCTCCTCTCCGCTGGCCACGGTGCCCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCATGCACTCGCTCACCTCCTCTCCGCTGGCCACGGTGCCCTTCT  900

seq1  TCTCCAGACCCTTCCTGAGCAGCTTCAGCAAGTAGTCCACTCGGGTCTGC  950
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TCTCCAGACCCTT-CTGAGCAGCTTCAGCAAGTAGT-CACTCGGGTCTGC  948

seq1  AGCTGCTTCCCCTGCGGCTTTTTATCCGTCTCCACTGGTAGAATCTTCAA  1000
      |||||||| ||||||||| |||||||||||||||||||||| ||||||||
seq2  AGCTGCTT-CCCTGCGGC-TTTTATCCGTCTCCACTGGTAG-ATCTTCAA  995

seq1  CAGGAAAGGAAGAGAAGCACACGCCACCACCCACAGCCCGGTTAGTGAAT  1050
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  CAGGAAAGGAAGAG-AGCACACG-CACCACCCACAGCCCGGTTAGTGAAT  1043

seq1  CCGGACAAATAG-AGACAACAAAGAATTCAGCACATTTCTTTCCCTCCCA  1099
      |||||| ||||| ||||||| ||||  |||||||| |||||  ||| || 
seq2  CCGGAC-AATAGAAGACAAC-AAGA--TCAGCACA-TTCTT--CCT-CCG  1085

seq1  ACCTCCCAAAACACAGATTAAAGCCTCAGATCCTATTCTCATGTCCATGG  1149
      |||| |||||||||||||||| ||||||||| || ||||||||| |||||
seq2  ACCTTCCAAAACACAGATTAAGGCCTCAGATTCTTTTCTCATGT-CATGG  1134

seq1  CTCCCAGTCACTGAAAATCCCTCATGAGCCATTCTCGTTTTACAAAATGG  1199
      || ||||||||||||     |||||||||   ||||| ||||||||   |
seq2  CT-CCAGTCACTGAA---TTCTCATGAGC--ATCTCG-TTTACAAA--TG  1175

seq1  GATGGAGAAATCCAGCTCTCCCACTGGCTCCTACCTGTGCTGTTAACAGG  1249
      |||||| |||| |||||| |||||||| ||||| ||| || ||||   ||
seq2  GATGGA-AAAT-CAGCTC-CCCACTGG-TCCTAACTGGGC-GTTA--CGG  1218

seq1  GTAGAACAACTCAGGTAGGAGGGGCTTGTGGCTTCATCTGCTAGAGCATC  1299
      ||     || ||||||| ||| | ||  | |||  |||||||||||||||
seq2  GT-----AAATCAGGTAAGAGAGCCT--TTGCTCTATCTGCTAGAGCATC  1261

seq1: chr7_80726986_80727153
seq2: B6Ng01-055P05.g_75_242 (reverse)

seq1  TCTCTCCCTCTCTCTCCCCTCCCCCGTGTGTATGTGTGTGTGTGTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCTCTCTCCCCTCCCCCGTGTGTATGTGTGTGTGTGTGTGTT  50

seq1  TGTGTATTGGGGGTCAGTGCAGACTCACATGCTGTCCCCCCTTTTCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGGGGGTCAGTGCAGACTCACATGCTGTCCCCCCTTTTCCACC  100

seq1  CTGCTTTGGACAGGGTGTATTTGCTGTTTTCAACTGTGCATATCAGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGGACAGGGTGTATTTGCTGTTTTCAACTGTGCATATCAGGCTA  150

seq1  GCTGGCTGAGCGCTTTGG  168
      ||||||||||||||||||
seq2  GCTGGCTGAGCGCTTTGG  168