BAC Information

Click to search

BAC

Clone NameB6Ng01-056B24
Chromosome7 (Build37)15 (Build37)
Map Location 116,873,903 - 116,874,16487,934,642 - 87,935,601
singlet/doubletsingletsinglet
Overlap geneAscl3
Upstream geneOlfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019
Downstream geneTmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056B24.bB6Ng01-056B24.g
ACCDH878384DH878385
length604961
definitionDH878384|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B24, 5' end.DH878385|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,873,903 - 116,874,164)(87,934,642 - 87,935,601)
sequence
gaattctaccagactttcaaagagatgatgccaatggtcctacaattatt
ccacggtatagaaacagaaggagcattgccaaattcattttatgaggcca
catgcattctgatacccaaccacacaaagactcaacggagaaagagaatt
acagaccaggttctctcatgaataattgatgcaaaatatattcaataaaa
atactcacaaagacagaatccaagaaaacataaaaaagatcattcaccat
gatcaagtaggcttcatttcaatgatgcagggatggttcaacatacaaaa
aaatctgtcaatgtagcccatgatataaacaaactgaactaaaaaaaaaa
accccacatgatgatgtcattagatgttgaagagcctttgacaaaatgca
gcatcccttcatgatgaaaagtcttggagatccaggaaactaggtacata
cctaaaaataaaaaaggcaacacacagaaagctgatagccagcaaattaa
atggagagaaactctaagcaattccactaaatccagaaacaagacaagaa
aagacaaggcagtctctctctctccctctctctctctccctctctctctc
tctc
gaattctctttctcagcacacttgaccccaataagcattctgactgtgct
tctgtcaaaggtctgctcgtctctctccgcccctctttactggagtttat
gctagggtttctgcttgtcttgctctggctgcccaagtgttaggctgggc
tgtctgctggaataggcaagaaaggaggggacacaggttcttgccacgga
gagctgtactgtggtcctcagagtggcagagggaggtttgatggccaggc
cagtggcctctcaggtctatgaggaagctgcctagctgtgagggattgct
gggaagttcctgatgtctctgatcattatttctgggactcttctcgtgtt
tgttagggatcagtcatagctcattttaaaattctgtaagaaatcccaca
tttagcaaatggcacttggccttcctacactatggactggggattgcata
taaaagttagctaccattcttgtccccagaaccatcctggctgtatccag
gagccatctgtacagggcctccacccccagagcatcacaggaccagtcta
ccaccaggtaaagtggtgagccacaggggagggtcctggggtacacagcc
ctggagaccagcctctctataacaacttcccacctgaactttcctcccca
aagaccctttgcttctgaatcccttgaatcccatgaatgtagaggaatgt
gaggcctctcaggatgcggtgtgaaccttcctggtccatggttcactacc
agtgttcttgacatggggatgttttactgctaacacagaggtgtccctac
atgggattgggagctgctgtgagctttccctagcagagacccggggggcg
tgctagccatctgaatgtagagtgaccacatgaggaaggaaggtgtgttg
gcttctagctcacccgtgtgtcctccaaggaaagggaccaacaaaaccac
attcatttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116873903_116874164
seq2: B6Ng01-056B24.b_605_654 (reverse)

seq1  GAGAGGGAGAGAGAGGGAGAGAGGGAAAATCACAGAGAGGGAGAGAGAGA  50
      ||||| |||||||||||||||||          |||||||||||||||||
seq2  GAGAGAGAGAGAGAGGGAGAGAG----------AGAGAGGGAGAGAGAGA  40

seq1  GATCTG---TGTCAGATCCTCTGATCTGGAGTTACAGCCCCCAGGGTATT  97
      || |||   ||                                       
seq2  GA-CTGCCTTG---------------------------------------  50

seq1  GTCTTGTGTCTTGTGGACAGTGGCCCACCCCACTGTCCTTGCATCATTTC  147
                                                        
seq2  --------------------------------------------------  50

seq1  CTGGGCAGGTGACCCTGGGCTGCAGAAGAAAGCCAGCAAGCCAGAAAGTG  197
                                                        
seq2  --------------------------------------------------  50

seq1  CGCCAGCAAACCAGGTTCCTCCATGGTCTCTACTTCAAGCTCCTGCTCCG  247
                                                        
seq2  --------------------------------------------------  50

seq1  TGAGCCTCTGCCTTG  262
                     
seq2  ---------------  50

seq1: chr15_87934642_87935601
seq2: B6Ng01-056B24.g_68_1028

seq1  GAATTCTCTTTCTCAGCACACTTGACCCCAATAAGCATTCTGACTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTCAGCACACTTGACCCCAATAAGCATTCTGACTGTGCT  50

seq1  TCTGTCAAAGGTCTGCTCGTCTCTCTCCGCCCCTCTTTACTGGAGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAAGGTCTGCTCGTCTCTCTCCGCCCCTCTTTACTGGAGTTTAT  100

seq1  GCTAGGGTTTCTGCTTGTCTTGCTCTGGCTGCCCAAGTGTTAGGCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGTTTCTGCTTGTCTTGCTCTGGCTGCCCAAGTGTTAGGCTGGGC  150

seq1  TGTCTGCTGGAATAGGCAAGAAAGGAGGGGACACAGGTTCTTGCCACGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGGAATAGGCAAGAAAGGAGGGGACACAGGTTCTTGCCACGGA  200

seq1  GAGCTGTACTGTGGTCCTCAGAGTGGCAGAGGGAGGTTTGATGGCCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTACTGTGGTCCTCAGAGTGGCAGAGGGAGGTTTGATGGCCAGGC  250

seq1  CAGTGGCCTCTCAGGTCTATGAGGAAGCTGCCTAGCTGTGAGGGATTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCTCTCAGGTCTATGAGGAAGCTGCCTAGCTGTGAGGGATTGCT  300

seq1  GGGAAGTTCCTGATGTCTCTGATCATTATTTCTGGGACTCTTCTCGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTCCTGATGTCTCTGATCATTATTTCTGGGACTCTTCTCGTGTT  350

seq1  TGTTAGGGATCAGTCATAGCTCATTTTAAAATTCTGTAAGAAATCCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGATCAGTCATAGCTCATTTTAAAATTCTGTAAGAAATCCCACA  400

seq1  TTTAGCAAATGGCACTTGGCCTTCCTACACTATGGACTGGGGATTGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAAATGGCACTTGGCCTTCCTACACTATGGACTGGGGATTGCATA  450

seq1  TAAAAGTTAGCTACCATTCTTGTCCCCAGAACCATCCTGGCTGTATCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTAGCTACCATTCTTGTCCCCAGAACCATCCTGGCTGTATCCAG  500

seq1  GAGCCATCTGTACAGGGCCTCCACCCCCAGAGCATCACAGGACCAGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTGTACAGGGCCTCCACCCCCAGAGCATCACAGGACCAGTCTA  550

seq1  CCACCAGGTAAAGTGGTGAGCCACAGGGGAGGGTCCTGGGGTACACAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGTAAAGTGGTGAGCCACAGGGGAGGGTCCTGGGGTACACAGCC  600

seq1  CTGGAGACCAGCCTCTCTATAACAACTTCCCACCTGAACTTTCCTCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACCAGCCTCTCTATAACAACTTCCCACCTGAACTTTCCTCCCCA  650

seq1  AAGACCCTTTGCTTCTGAATCCCTTGAATCCCATGAATGTAGAGGAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTTTGCTTCTGAATCCCTTGAATCCCATGAATGTAGAGGAATGT  700

seq1  GAGGCCTCTCAGGATGCGGTGTGAACCTTCCTGGTCCATGG-TCACTACC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGGCCTCTCAGGATGCGGTGTGAACCTTCCTGGTCCATGGTTCACTACC  750

seq1  AGTGTTCTTGACATGGGGATG-TTTACTGCTAACACAGAGGTGTCCCTAC  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTGTTCTTGACATGGGGATGTTTTACTGCTAACACAGAGGTGTCCCTAC  800

seq1  ATGGTATT-GGAGCTGCTGTGAGCTTTCCCTAGCAGAGACCC-TGGCTCC  846
      |||| ||| |||||||||||||||||||||||||||||||||  ||  | 
seq2  ATGGGATTGGGAGCTGCTGTGAGCTTTCCCTAGCAGAGACCCGGGGGGCG  850

seq1  TGCTAGCCATCTGAATGTAGAGTGACCACATGAGGAAGGAAGGTGTGTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCCATCTGAATGTAGAGTGACCACATGAGGAAGGAAGGTGTGTTG  900

seq1  GCTTTCTAGCTCAGCCGTGTGTTCCTCCAGGGAAAGGGACCAACAGAACC  946
      || |||||||||| ||||||| ||||||| ||||||||||||||| ||||
seq2  GC-TTCTAGCTCACCCGTGTG-TCCTCCAAGGAAAGGGACCAACAAAACC  948

seq1  ACAGTTCATTTGCT  960
      ||| ||||||||||
seq2  ACA-TTCATTTGCT  961