BAC Information

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BAC

Clone NameB6Ng01-057H04
Chromosome3 (Build37)7 (Build37)
Map Location 153,971,732 - 153,972,178115,243,253 - 115,244,260
singlet/doubletsingletsinglet
Overlap geneLhx8
Upstream geneSt6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
Downstream geneLOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057H04.bB6Ng01-057H04.g
ACCDH879313DH879314
length730997
definitionDH879313|Mus musculus domesticus DNA, BAC clone: B6Ng01-057H04, 5' end.DH879314|Mus musculus domesticus DNA, BAC clone: B6Ng01-057H04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,971,732 - 153,972,178)(115,243,253 - 115,244,260)
sequence
gaattctttgatttctcctatatggtaattgagagttttgctgggtatag
taacctgggctggcatttgtgtactttagtgtctgtataacatctgtcca
ggctcttctggctttcatggtctctggtgagaaatctggtgtaattctaa
taggcctgcctttatatgttacttgaccttttccctttactgcttttaat
attctatctttatttagtgcatttgttgtttgattattatgtgtggggag
gaatttcttgtgggttttcaccaatttggggttcgtgtccaaggagctgg
ggacatcttgtctgcttgggggaaagctgggaaattttctttggaacctt
tggggaacataactggtgggcgtggaaaatgaacccctgctctctgcttg
tggggaccttctcggctctcatgctgctgctggtgtgaccacagagtgaa
gctactggtagaatgacctgaattagagcaactgctctagctacgccctc
acacataaccaacgcatagaccatagagaagcttcaacaggtaccaagag
atgcatgcgagagaatccacagaagcatgttcctaaaatacccaaactgg
aacacaaaaaaaaattatcaaccacagaacaggcatgaaacgatccctca
agtggagttctgtataataaatcagcaagactgaggactctcacactcca
tggaagtgggggagaagtgaggggagagga
gaattcaatcatcggggatcattacctcatccaggtgagaactgagcagt
tcatttcacacatgcatatgataaattttcaaagactctgtccatctcaa
gtaataccttgtttttctctttatgtgagtattgatgcactttcacttga
taatcatgggaggtacagaatcacaaataattttaggtaaattgttcaag
ttgatatttgattcattttggtttgtgttagataatattaaacaaggtaa
aaagtgaactatttttattttcttcatccatgcacaccagatttttcctt
tagtattttagtggttgacataacaaactctattaggtaggtgctttgtt
gaatatagggaggaatgagatgcaaagttcaattattatttgaagcaaaa
tcaatttttataggaaaagagtgcaaagaaagaagttttccaagtaatga
ttaacatttcataattcccacctcaaagatgtgacaggtggcaaagctta
tatgctataagggagaaaataagacttagtgattctccacctgaagagtc
atctcaactctattgctaatattactttcgcgaagttccgcactttacta
ttgatattaccttgagaaaagattttgaccactgaccaacactcagcttt
cattcaaagtatctcctgtccctgttggcaaaggagaggtagggacagga
tcatcactgaaaactccctggtacactatcctggagtataggccagtgaa
tgactaaaagaccctgtatcagaagggtggcacacaggaaagatagtgac
attgaattctgatcgctgtatctatgtactctggcatatggcacctggac
tctcatgatcatgtgcacaacatctgtagggattgcaggctggtctccag
tctagctgaagctgatcctcgatagtcataattccctgcatgacacggta
gtgtccctcatgctcctggacctcaggcccctgcctaagtaccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153971732_153972178
seq2: B6Ng01-057H04.b_325_770

seq1  GTGTCCAAGGAGCTGGGGACATCTTGTCTGTCATGGGGGAAAGCTGGTAA  50
      |||||||||||||||||||||||||||||| | |||||||||||||| ||
seq2  GTGTCCAAGGAGCTGGGGACATCTTGTCTG-CTTGGGGGAAAGCTGGGAA  49

seq1  ACGTGAGCTGGAACCTCATGGTCACCAGACTGGCCAGGGTGGAGAAGGGA  100
      |  |    ||||||||   ||  ||   |||||   | ||||| || | |
seq2  ATTTTCTTTGGAACCTTTGGGGAACATAACTGGTGGGCGTGGAAAATGAA  99

seq1  CCCATGCTCAGTGCTTGTGGGGACCTTCAGGGCTCTCATGCTGCTGCTGG  150
      ||| |||||  |||||||||||||||||  ||||||||||||||||||||
seq2  CCCCTGCTCTCTGCTTGTGGGGACCTTCTCGGCTCTCATGCTGCTGCTGG  149

seq1  TCAGACCACAGTGTGAAGCTTCTGGTAGAATGTCCTGAAGTAGAGCAACT  200
      |  |||||||| |||||||| ||||||||||| |||||| ||||||||||
seq2  TGTGACCACAGAGTGAAGCTACTGGTAGAATGACCTGAATTAGAGCAACT  199

seq1  GCTCTAGCTACGCCCTCACACATAACCAACGCATAGACCAGAGAGAAGCT  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTCTAGCTACGCCCTCACACATAACCAACGCATAGACCATAGAGAAGCT  249

seq1  TCAACAGGTACCAAGAGATGCATGCGAGAGAATCCACAGTAGCATGTTCC  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAACAGGTACCAAGAGATGCATGCGAGAGAATCCACAGAAGCATGTTCC  299

seq1  TAAAATACCCAAACTGGAACACAAAAAAAAATTATCAACCACAGAACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACCCAAACTGGAACACAAAAAAAAATTATCAACCACAGAACAGG  349

seq1  CATGAAACGATCCCTCAAGTGGAGTTCTGTATAATAAATCAGCAAGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACGATCCCTCAAGTGGAGTTCTGTATAATAAATCAGCAAGACTG  399

seq1  AGGACTCTCACACTCCATGGAAGTGGGGGAGAAGTGAGGGGAGAGGA  447
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTCACACTCCATGGAAGTGGGGGAGAAGTGAGGGGAGAGGA  446

seq1: chr7_115243253_115244260
seq2: B6Ng01-057H04.g_67_1063 (reverse)

seq1  AGGTGGTACCTTAGGCAGGGGCCTGAGTTCCAGGAGCATGAGGGAACACC  50
      |||||||| |||||||||||||||||| |||||||||||||||| ||| |
seq2  AGGTGGTA-CTTAGGCAGGGGCCTGAGGTCCAGGAGCATGAGGG-ACA-C  47

seq1  TACCGTGTCATGTAGGTGAATTATGACTATCGAGGTTCAGACTTCAGCTC  100
      |||||||||||| ||| |||||||||||||||||| |||| |||||||| 
seq2  TACCGTGTCATGCAGG-GAATTATGACTATCGAGGATCAG-CTTCAGCTA  95

seq1  GACTGGAGACCAGCCTGCAATTCCCTACACATGTTTGTGCACATGATCAT  150
      |||||||||||||||||||| |||||||| ||| ||||||||||||||||
seq2  GACTGGAGACCAGCCTGCAA-TCCCTACAGATG-TTGTGCACATGATCAT  143

seq1  GTGAGTCCAGGTGCCATTATGCCAGAGTAAATAGATACAGTGATCAGAAT  200
      | |||||||||||||| |||||||||||| |||||||||| |||||||||
seq2  GAGAGTCCAGGTGCCA-TATGCCAGAGTACATAGATACAGCGATCAGAAT  192

seq1  TCAATGTCACTATCTTTCCTGATTTGCCACCCTTCTGATACAGGGTCTTT  250
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  TCAATGTCACTATCTTTCCTG-TGTGCCACCCTTCTGATACAGGGTCTTT  241

seq1  TCTGTCATTCACTGGCCTATACTCCAGGATAGTGTACCAGGGAGTTTTCA  300
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AGTCATTCACTGGCCTATACTCCAGGATAGTGTACCAGGGAGTTTTCA  290

seq1  GTGATGATCCTGTCCCTACCTCTCCTTTGCCAACAGGGACAGGAGATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATCCTGTCCCTACCTCTCCTTTGCCAACAGGGACAGGAGATACT  340

seq1  TTGAATGAAAGCTGACTGTTGGTCAGTGGTCAAAATCTTTTCTCAAGGTA  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGAATGAAAGCTGAGTGTTGGTCAGTGGTCAAAATCTTTTCTCAAGGTA  390

seq1  ATATCAATAGTAAAGTGTGGAACTTCGTGAAAGTAATATTAGCAATAGAG  450
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  ATATCAATAGTAAAGTGCGGAACTTCGCGAAAGTAATATTAGCAATAGAG  440

seq1  TTGAGATGACTCTTCAGGTGGAGAATCACTAAGTCTTATTTTCTCCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGACTCTTCAGGTGGAGAATCACTAAGTCTTATTTTCTCCCTTA  490

seq1  TAGCATATAAGCTTTGCCACCTGTCACATCTTTGAGGTGGGAATTATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATAAGCTTTGCCACCTGTCACATCTTTGAGGTGGGAATTATGAA  540

seq1  ATGTTAATCATTACTTGGAAAACTTCTTTCTTTGCACTCTTTTCCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATCATTACTTGGAAAACTTCTTTCTTTGCACTCTTTTCCTATAA  590

seq1  AAATTGATTTTGCTTCAAATAATAATTGAACTTTGCATCTCATTCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTTTGCTTCAAATAATAATTGAACTTTGCATCTCATTCCTCCC  640

seq1  TATATTCAACAAAGCACCTACCTAATAGAGTTTGTTATGTCAACCACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAACAAAGCACCTACCTAATAGAGTTTGTTATGTCAACCACTAA  690

seq1  AATACTAAAGGAAAAATCTGGTGTGCATGGATGAAGAAAATAAAAATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAAAGGAAAAATCTGGTGTGCATGGATGAAGAAAATAAAAATAGT  740

seq1  TCACTTTTTACCTTGTTTAATATTATCTAACACAAACCAAAATGAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTACCTTGTTTAATATTATCTAACACAAACCAAAATGAATCAA  790

seq1  ATATCAACTTGAACAATTTACCTAAAATTATTTGTGATTCTGTACCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACTTGAACAATTTACCTAAAATTATTTGTGATTCTGTACCTCCC  840

seq1  ATGATTATCAAGTGAAAGTGCATCAATACTCACATAAAGAGAAAAACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATCAAGTGAAAGTGCATCAATACTCACATAAAGAGAAAAACAAG  890

seq1  GTATTACTTGAGATTGACAGAGTCTTTGAAAATTTATCATATGCATGTGT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTATTACTTGAGATGGACAGAGTCTTTGAAAATTTATCATATGCATGTGT  940

seq1  GAAATGAACTGCTCAGTTCTCACCTGGATGAGGTAATGATCCCTGATGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GAAATGAACTGCTCAGTTCTCACCTGGATGAGGTAATGATCCCCGATGA-  989

seq1  TTGAATTC  1008
      ||||||||
seq2  TTGAATTC  997