BAC Information

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BAC

Clone NameB6Ng01-057I13
Chromosome7 (Build37)11 (Build37)
Map Location 107,677,567 - 107,677,92596,102,518 - 96,103,042
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112
Downstream geneChchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057I13.bB6Ng01-057I13.g
ACCDH879377DH879378
length525519
definitionDH879377|Mus musculus domesticus DNA, BAC clone: B6Ng01-057I13, 5' end.DH879378|Mus musculus domesticus DNA, BAC clone: B6Ng01-057I13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,677,567 - 107,677,925)(96,102,518 - 96,103,042)
sequence
agtggatctgtagaagcagaaggtttaaggttatccagggctatttttga
gcttgggctagagaccttatcgcaaaaaggagggtaaagtgggaattcca
ggtttccttggagactcaggtgtgtcctttgatatttttctgcaaactct
ctcctgagaagatgctttgctgaagcagacacgtgagaggatggtttgct
gagaactgacatgtggtggtgtttttccggaagttgcctgaggagagaac
atgtgatgtgtttgctggagttgatgcttgaaaggatatgtgatgtttgg
aaagtgcataaaatataggggctggagagatggctcagcgggtaagagca
ctgactgctcttccaaaggtcatgagttcaaatcccagtaaccacatggt
ggttcacaaccatccttaataaggtctgacaccctcttctggtgtgtctg
aagacagctacagtgtacttagatataataataaataaatctttaatgta
tatatatatatatatatatatatat
actttgtagaccaggctggcctcaaactcagtgatccacctgcctctgcc
cccccagtgctaggattcaagtcatgcaccacgactgcctgtcttaataa
gcactcttaaccactgacccatatctctccagaccctatatttcaatatt
taaaatgctaacaacccactatcttactttaggttttttttttaattatt
ttttttccggttaatttgaattcggcattgattcaaaactaccactttag
aaccctggtagtttctttttatttcttttacaataaacctggaaagaccc
attatcattccatactttaggctttgaaataaatctggtgaatttacccc
aattaaaattttttcccaagttttcaggagaaatttgattagtgctgtct
tagtctctcaccgtgttgtttccttgacaatagaccaaagaatttatgac
tacataagtggaattctacctctttctctaacaggctctcccaacaactg
cctctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107677567_107677925
seq2: B6Ng01-057I13.b_370_577 (reverse)

seq1  ATATATATACATACATATATATATATATATATAGTATGTAAGTAAATCTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAAAGATTTATTTATTATTATATCTATAATAGATATAATATATAGAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATATATAGTATGTAAGTAAATATCTATAATATATATATATATAGACATA  150
                                     ||||||||||||| | |||
seq2  -------------------------------ATATATATATATATATATA  19

seq1  TATATATATAGTATGTAAGTAAATCTTTTTTTAAAGATTTATTTATTGTT  200
      |||||||| |                    ||||||||||||||||| ||
seq2  TATATATACA--------------------TTAAAGATTTATTTATTATT  49

seq1  ATATCTACGTACACTGTAGCTGTCTTCAGGCACATGAGAAGTGGGCATCA  250
      ||||||| ||||||||||||||||||||| ||||  ||||| |||  |||
seq2  ATATCTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTCA  99

seq1  GATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA  300
      || || ||||  ||||||||||| ||||||||||||| ||||||||||||
seq2  GACCTTATTAAGGATGGTTGTGAACCACCATGTGGTTACTGGGATTTGAA  149

seq1  CTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTC  350
      |||| |||||| |||||||||||||||||||||| |||||||||||||||
seq2  CTCATGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTC  199

seq1  TCCAGCCCC  359
      |||||||||
seq2  TCCAGCCCC  208

seq1: chr11_96102518_96103042
seq2: B6Ng01-057I13.g_71_595 (reverse)

seq1  GGAGGAGGAGGAGGAGAGGCAGTTGTTGGGAGAGCCTGTTAGAGAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGAGGCAGTTGTTGGGAGAGCCTGTTAGAGAAAGAG  50

seq1  GTAGAATTCCACTTATGTAGTCATAAATTCTTTGGTCTATTGTCAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTCCACTTATGTAGTCATAAATTCTTTGGTCTATTGTCAAGGAA  100

seq1  ACAACACGGTGAGAGACTAAGACAGCACTAATCAAATTTCTCCTGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACGGTGAGAGACTAAGACAGCACTAATCAAATTTCTCCTGAAAAC  150

seq1  TTGGGAAAAAATTTTAATTGGGGTAAATTCACCAGATTTATTTCAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAAAATTTTAATTGGGGTAAATTCACCAGATTTATTTCAAAGCC  200

seq1  TAAAGTATGGAATGATAATGGGTCTTTCCAGGTTTATTGTAAAAGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATGGAATGATAATGGGTCTTTCCAGGTTTATTGTAAAAGAAATA  250

seq1  AAAAGAAACTACCAGGGTTCTAAAGTGGTAGTTTTGAATCAATGCCGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTACCAGGGTTCTAAAGTGGTAGTTTTGAATCAATGCCGAAT  300

seq1  TCAAATTAACCGGAAAAAAAATAATTAAAAAAAAAACCTAAAGTAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAACCGGAAAAAAAATAATTAAAAAAAAAACCTAAAGTAAGATA  350

seq1  GTGGGTTGTTAGCATTTTAAATATTGAAATATAGGGTCTGGAGAGATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGTTAGCATTTTAAATATTGAAATATAGGGTCTGGAGAGATATG  400

seq1  GGTCAGTGGTTAAGAGTGCTTATTAAGACAGGCAGTCGTGGTGCATGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGGTTAAGAGTGCTTATTAAGACAGGCAGTCGTGGTGCATGACT  450

seq1  TGAATCCTAGCACTGGGGGGGCAGAGGCAGGTGGATCACTGAGTTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTAGCACTGGGGGGGCAGAGGCAGGTGGATCACTGAGTTTGAGG  500

seq1  CCAGCCTGGTCTACAAAGTGAATTC  525
      |||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAAAGTGAATTC  525