BAC Information

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BAC

Clone NameB6Ng01-057P14
Chromosome7 (Build37)
Map Location 19,404,075 - 19,549,503
singlet/doubletdoublet
Overlap genePsg17, Mill2, Pglyrp1, C530028I08Rik, Nova2
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19
Downstream geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057P14.bB6Ng01-057P14.g
ACCDH879679DH879680
length592889
definitionDH879679|Mus musculus domesticus DNA, BAC clone: B6Ng01-057P14, 5' end.DH879680|Mus musculus domesticus DNA, BAC clone: B6Ng01-057P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,548,907 - 19,549,503)(19,404,075 - 19,404,962)
sequence
agcagtcaattctccaaagactgccccatcccaaagccattctttttgag
ccagcctccaacagaggaagcagaggagagattcaattctcagctccacc
aaggttcttcagaaagctcggagaacgaacccatttcacaggatctcaag
aacaaaggctttctctccctcctcccggtcggaggacctgtgcaccccag
ccagctgtccgagttaatactgttctctcgagatccttaacattttggcg
gggcacaccttgggtttctcccaaatcgaaccgggatgtggaccatgcct
ccaggagttgagatgccaacacaaataagagagagagagagagagagaga
gagagagagagagagagagagagagagaaagagagagacactccccacgt
cgcctggctcaaaccaagtacaaaagtgactatttacaatgaaggcgtgg
ggagtgggtgggggcaacggggaggacagtcagagtgagcgctcctatgg
ggaggccacgccccctaggccggcctttgcaaagccaaactgtaaaggta
tttctagaagatctcctgtgcccccaggggaggcggatccta
gaattcttggctgttctgtatcgggcaatctcaagcttgttaaacacaac
tgctcctttgtaccaggtaagtgatataagatactctggtagattgtgaa
caaggaaaagaacacttcctccttcagcaacgctggccggcactaattca
atagtgggaggtacaagggtagtaggacgctcacagatgaaaagagaggc
taaaagggaagagagatccatcaatattaggatttttgtgtttgactaag
atggtgccctgtgtcctgagcagctgtgtccatagctcagctgaggtgtg
tgtgtgagggtctcaccttccctacttggtggaggtcaccacattacctt
catgcgctccgtgtccctcatttctcatttcctctgtatggtgctctctc
cttggatgtctacatggacctgcttcattcctctcagatccctgctcaca
ctcagtgtagatggtgttggagtgctgtctcctgaccccttccccagcat
cctgtcttcactctctgactctattgttgtgtttctgttccttaaatggt
tccctccaacacctgatcaccttctagctttctttactagtctgtcttcc
tgtccactagggctagagaattgtgagacccagtagtggtcttttttttt
tcttttaaagaaaggctgcctaaaaacacatcagatatctgtagggaacc
aatgaaagatttaatttaattaattaatgatctctcaggaccatgcctac
tcatagattttaacagttttcatatgttttggggatacagtgttcaggct
tccattaactttttgggtttgttttgttttgttttgttttgtttgcatat
gtgtgtgtgtgtatgtgtgtgtttagacaagaagtttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19548907_19549503
seq2: B6Ng01-057P14.b_47_644 (reverse)

seq1  TAGGATCCGCCTCCCCTGGGGGCACAGG-GATCTTCTAGAAATACCTTTG  49
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TAGGATCCGCCTCCCCTGGGGGCACAGGAGATCTTCTAGAAATACCTTTA  50

seq1  CAGTTTGGCTTTGCAAAGGCCGGCCTAGGGGGCGTGGCCTCCCCATCGGA  99
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGTTTGGCTTTGCAAAGGCCGGCCTAGGGGGCGTGGCCTCCCCATAGGA  100

seq1  GCGCTCACTCTGACTGTCCTCCCCGTTGCCCCCACCCACTCCCCACGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCACTCTGACTGTCCTCCCCGTTGCCCCCACCCACTCCCCACGCCT  150

seq1  TCATTGTAAATAGTCACTTTTGTACTTGGTTTGAGCCAGGCGACGTGGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTAAATAGTCACTTTTGTACTTGGTTTGAGCCAGGCGACGTGGGG  200

seq1  AGTGTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTCTCTTATTTGTGTTGGCATCTCAACTCCTGGAGGCATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTTATTTGTGTTGGCATCTCAACTCCTGGAGGCATGG  300

seq1  TCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCAAAA  350

seq1  TGTTAAGGATCTCGAGAGAACAGTATTAACTCGGACAGCTGGCTGGGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGATCTCGAGAGAACAGTATTAACTCGGACAGCTGGCTGGGGTG  400

seq1  CACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT  450

seq1  CCTGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGC  500

seq1  TGAGAATTGAATCTCTCCTCTGCTTCCTCTGTTGGAGGCTGGCTCAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTGAATCTCTCCTCTGCTTCCTCTGTTGGAGGCTGGCTCAAAAA  550

seq1  GAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTC  598

seq1: chr7_19404075_19404962
seq2: B6Ng01-057P14.g_69_957

seq1  GAATTCTTGGCTGTTCTGTATCGGGCAATCTCAAGCTTGTTAAACACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCTGTTCTGTATCGGGCAATCTCAAGCTTGTTAAACACAAC  50

seq1  TGCTCCTTTGTACCAGGTAAGTGATATAAGATACTCTGGTAGATTGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTGTACCAGGTAAGTGATATAAGATACTCTGGTAGATTGTGAA  100

seq1  CAAGGAAAAGAACACTTCCTCCTTCAGCAACGCTGGCCGGCACTAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAAGAACACTTCCTCCTTCAGCAACGCTGGCCGGCACTAATTCA  150

seq1  ATAGTGGGAGGTACAAGGGTAGTAGGACGCTCACAGATGAAAAGAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGGAGGTACAAGGGTAGTAGGACGCTCACAGATGAAAAGAGAGGC  200

seq1  TAAAAGGGAAGAGAGATCCATCAATATTAGGATTTTTGTGTTTGACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGAAGAGAGATCCATCAATATTAGGATTTTTGTGTTTGACTAAG  250

seq1  ATGGTGCCCTGTGTCCTGAGCAGCTGTGTCCATAGCTCAGCTGAGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCCTGTGTCCTGAGCAGCTGTGTCCATAGCTCAGCTGAGGTGTG  300

seq1  TGTGTGAGGGTCTCACCTTCCCTACTTGGTGGAGGTCACCACATTACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGGTCTCACCTTCCCTACTTGGTGGAGGTCACCACATTACCTT  350

seq1  CATGCGCTCCGTGTCCCTCATTTCTCATTTCCTCTGTATGGTGCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCTCCGTGTCCCTCATTTCTCATTTCCTCTGTATGGTGCTCTCTC  400

seq1  CTTGGATGTCTACATGGACCTGCTTCATTCCTCTCAGATCCCTGCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGTCTACATGGACCTGCTTCATTCCTCTCAGATCCCTGCTCACA  450

seq1  CTCAGTGTAGATGGTGTTGGAGTGCTGTCTCCTGACCCCTTCCCCAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTAGATGGTGTTGGAGTGCTGTCTCCTGACCCCTTCCCCAGCAT  500

seq1  CCTGTCTTCACTCTCTGACTCTATTGTTGTGTTTCTGTTCCTTAAATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCACTCTCTGACTCTATTGTTGTGTTTCTGTTCCTTAAATGGT  550

seq1  TCCCTCCAACACCTGATCACCTTCTAGCTTTCTTTACTAGTCTGTCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAACACCTGATCACCTTCTAGCTTTCTTTACTAGTCTGTCTTCC  600

seq1  TGTCCACTAGGGCTAGAGAATTGTGAGACCCAGTAGTGGTCTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTAGGGCTAGAGAATTGTGAGACCCAGTAGTGGTCTTTTTTTTT  650

seq1  TCTTTTAAAGAAAGGCTGCCTAAAAACACATCAGATATCTGTAGGGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAGAAAGGCTGCCTAAAAACACATCAGATATCTGTAGGGAACC  700

seq1  AATGAAAGATTTAA-TTAATTAATTAATGATCTCTCAGGACCATGCCTAC  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATGAAAGATTTAATTTAATTAATTAATGATCTCTCAGGACCATGCCTAC  750

seq1  TCATAGA-TTTAACAG-TTTCATATG-TTTGGGGATACAGTGTTCAAGGC  796
      ||||||| |||||||| ||||||||| |||||||||||||||||| ||||
seq2  TCATAGATTTTAACAGTTTTCATATGTTTTGGGGATACAGTGTTC-AGGC  799

seq1  TTCCATTAAC-TTTTGGGTTTGTTTTGTTTTGTTTTGTTTTGTTTGCAAT  845
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TTCCATTAACTTTTTGGGTTTGTTTTGTTTTGTTTTGTTTTGTTTGC-AT  848

seq1  ATGTGTGTGTGTGTATGTGTGTGTTTCTGACAAGGATGTTTCT  888
      ||||||||||||||||||||||||||  ||||| || ||||||
seq2  ATGTGTGTGTGTGTATGTGTGTGTTT-AGACAA-GAAGTTTCT  889