BAC Information

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BAC

Clone NameB6Ng01-058P24
Chromosome7 (Build37)
Map Location 25,112,713 - 25,260,223
singlet/doubletdoublet
Overlap gene1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur
Upstream geneNlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94
Downstream geneCadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058P24.bB6Ng01-058P24.g
ACCDH880424DH880425
length1,1201,050
definitionDH880424|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P24, 5' end.DH880425|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,112,713 - 25,113,851)(25,259,149 - 25,260,223)
sequence
gaattcttcccatgatccttactttcaaagtgtgttttgcctctaaatgc
ccacttggcacaagctttgcgtcacagccaccgtcttcccacactccctc
ttcacagaggacttcaccccactaaggatgctttactgtgaggtgagtgc
attcgttcctgtactcttctggatttgccttggctcctcccgttatttct
gaaggtgggtgtctcacgatcaaagatttagttcaaaactgttcctttct
gaagataacacctttcacctcctatcttgactccaaatctgaaaaagaga
gaaaaaaatatatatcatgtccttcatgaggtaaaaatatctagtggtaa
gagtgaaaacagagagaagacagagtgataattgaaatcggtcccaatga
ggcaggtagcttgattagacttaccaaagtcattgctgacagtgagcccc
agatgctgtgatcttactgtttcagacaggatctgtcaagtgtgccacag
actgcacacaccgccttttgattgataactccagtctgtgctcgtgaacc
taaaccttcactccaaggccctggcccctaccccagactggccttgacag
gaagcagcaatatgagagccctaaaacacagaaagcctgacttgtcgtcc
caagaaatcaagtctggccacacactcccaaaatcaaacccaaaattgat
gaaaagcagaaaacaaatttactcaagacagcttcattggaaacacaaag
gaggacccaacgtccttagtgcagtcgtcaggtaaatggacataatcatt
aaaaaagaccgaaacaggccaggtgtggcactgctcgcctttaatcccaa
cacgtcagagacagagacaggtggatccctgttagatcagggatagcctg
gtctccttagcaagctacccaggctatatactatgtgagggaaaaaggaa
gttggaaccagggccaagaggtccacataataagtgctctgggtcacact
gtgctgactggtcatatttctactctgatctgcaagctctgggcatgttg
tttgagtgaattggttccccagatgactgtttccagtggcacctcccctt
gggcgctgcctagaaaactc
gaattctcaggaaagtgacaggctcctggtggtggacgccatcgccaacc
accagttccctgttgggagcagggcttcccaaagtgtgttccaggaaccc
ctggcagtgcctcagactcacaccaggattgatttcatagtaacactgag
atgtcatttggcccttccaagctttttgtgtgtacaagagatacttttcc
agagaaaccccaggacatgatattgcaacaggcggaacacgaaagcagag
ccggggaccagctgtctgctattagagccagacgggaagagggttgccac
acagtaaacaatgacagcactctctttgcactttttcattatgaaaaaca
caggcacccccccccccatcaaaactattatttatgagaccagctatggt
agtgcacacctttaatcccagcactcagaaggcagtggcaggcagatctc
tcggtttgacgccagcctggtctacagagtgagttccagggcagccaggg
cgacagagtaagacccagtctcaaagagaaacattagggtgtaatgaagt
gtattattcttgttggctccacagaggcaaactctcttgttgcaatttgt
cctttttgcaggtagacaccgcctcctccccaccccccagacagggcctc
tctgtatggaccaggctgtcctcaaacccagagatccacctacctctgat
tcccaagtgctgggagtaaactgtgtaccaccatccccagctaaagtgtc
gcctttaccataggaagatccaaccggaccatctgtcaatcagtcttatc
agcgctcagtgcctcagtgggtccccttccagctcccacagggcctcacc
atctaagcctgtagccaccaggcactgattcattggtccccggcagtgat
gagagacgctcttcggagaacactcaagggtatgttcccctcacagctgt
accactggagcatcggtggaaagctctgaagatcgactaaagatggaaac
aaaaatataaacgctgggacaaatgaccctggtctatgcagccattcatc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25112713_25113851
seq2: B6Ng01-058P24.b_44_1163

seq1  GAATTCTTCCCATGATCCTTACTTTCAAAGTGTGTTTTGCCTCTAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCATGATCCTTACTTTCAAAGTGTGTTTTGCCTCTAAATGC  50

seq1  CCACTTGGCACAAGCTTTGCGTCACAGCCACCGTCTTCCCACACTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGCACAAGCTTTGCGTCACAGCCACCGTCTTCCCACACTCCCTC  100

seq1  TTCACAGAGGACTTCACCCCACTAAGGATGCTTTACTGTGAGGTGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGGACTTCACCCCACTAAGGATGCTTTACTGTGAGGTGAGTGC  150

seq1  ATTCGTTCCTGTACTCTTCTGGATTTGCCTTGGCTCCTCCCGTTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCCTGTACTCTTCTGGATTTGCCTTGGCTCCTCCCGTTATTTCT  200

seq1  GAAGGTGGGTGTCTCACGATCAAAGATTTAGTTCAAAACTGTTCCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGTGTCTCACGATCAAAGATTTAGTTCAAAACTGTTCCTTTCT  250

seq1  GAAGATAACACCTTTCACCTCCTATCTTGACTCCAAATCTGAAAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAACACCTTTCACCTCCTATCTTGACTCCAAATCTGAAAAAGAGA  300

seq1  GAAAAAAATATATATCATGTCCTTCATGAGGTAAAAATATCTAGTGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATATATATCATGTCCTTCATGAGGTAAAAATATCTAGTGGTAA  350

seq1  GAGTGAAAACAGAGAGAAGACAGAGTGATAATTGAAATCGGTCCCAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAAACAGAGAGAAGACAGAGTGATAATTGAAATCGGTCCCAATGA  400

seq1  GGCAGGTAGCTTGATTAGACTTACCAAAGTCATTGCTGACAGTGAGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAGCTTGATTAGACTTACCAAAGTCATTGCTGACAGTGAGCCCC  450

seq1  AGATGCTGTGATCTTACTGTTTCAGACAGGATCTGTCAAGTGTGCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTGATCTTACTGTTTCAGACAGGATCTGTCAAGTGTGCCACAG  500

seq1  ACTGCACACACCGCCTTTTGATTGATAACTCCAGTCTGTGCTCGTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACACACCGCCTTTTGATTGATAACTCCAGTCTGTGCTCGTGAACC  550

seq1  TAAACCTTCACTCCAAGGCCCTGGCCCCTACCCCAGACTGGCCTTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTCACTCCAAGGCCCTGGCCCCTACCCCAGACTGGCCTTGACAG  600

seq1  GAAGCAGCAATATGAGAGCCCTAAAACACAGAAAGCCTGACTTGTCGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCAATATGAGAGCCCTAAAACACAGAAAGCCTGACTTGTCGTCC  650

seq1  CAAGAAATCAAGTCTGGCCACACACTCCCAAAATCAAACCCAAAATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATCAAGTCTGGCCACACACTCCCAAAATCAAACCCAAAATTGAT  700

seq1  GAAAAGCAGAAAACAAATTTACTCAAGACAGCTTCATTGGAAACACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGAAAACAAATTTACTCAAGACAGCTTCATTGGAAACACAAAG  750

seq1  GAGGACCCAACGTCCTTAGTGCAGTCGTCAGGTAAATGGACATAATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCCAACGTCCTTAGTGCAGTCGTCAGGTAAATGGACATAATCATT  800

seq1  AAAAAAGACCGAAACAGGCCAGGTGTGGCACTGCTCGCCTTTAATCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACCGAAACAGGCCAGGTGTGGCACTGCTCGCCTTTAATCCCAA  850

seq1  CACGTCAGAGACAGAGACAGGTGGATCCCTGTTAGATCAGGGATAGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCAGAGACAGAGACAGGTGGATCCCTGTTAGATCAGGGATAGCCTG  900

seq1  GTCTCCTTAGCAAGCTACCCAGGGCTATATACTATGTGAGGGGAAAAAAG  950
      ||||||||||||||||||||| ||||||||||||||||||||  ||||||
seq2  GTCTCCTTAGCAAGCTACCCA-GGCTATATACTATGTGAGGG--AAAAAG  947

seq1  GAAGGTTGGAACCAGGGCCAAGAGGTCCACATAATTAAGTGCTCTGGGTC  1000
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAA-GTTGGAACCAGGGCCAAGAGGTCCACATAA-TAAGTGCTCTGGGTC  995

seq1  ACACTGTGGCTTGACTGGTCATTATTTCTACTCTGATTCTGCAAGGCTCT  1050
      ||||||||   |||||||||| |||||||||||||| ||||||| |||||
seq2  ACACTGTG--CTGACTGGTCA-TATTTCTACTCTGA-TCTGCAA-GCTCT  1040

seq1  GGGCATTGTTGTTTGAGGTGATTTGGTTCCCACAAGATGACTGTTTTCCA  1100
      ||||| |||||||||| |||| ||||||||  | ||||||||| ||||||
seq2  GGGCA-TGTTGTTTGA-GTGAATTGGTTCC--CCAGATGACTG-TTTCCA  1085

seq1  GTGGCAACCTCCTCATGGGGAGCGCTGCCTAGAAGACTC  1139
      ||||| |||||| | |||   ||||||||||||| ||||
seq2  GTGGC-ACCTCCCCTTGG---GCGCTGCCTAGAAAACTC  1120

seq1: chr7_25259149_25260223
seq2: B6Ng01-058P24.g_69_1118 (reverse)

seq1  GATGGATGGCTGCATAGACCCAGTGCTCATCTTCGTTCCCTGTCGTTTTT  50
      |||| ||||||||||||| |||| | |||| |    |||| | ||     
seq2  GATGAATGGCTGCATAGA-CCAG-GGTCATTT---GTCCCAG-CG-----  39

seq1  TTTTTTTTTTTTTTTTTTTCCATCTTTAAGTTCTGGATCTTCAGAGCTTT  100
          ||| | ||||| ||||||||||||     | |||||||||||||||
seq2  ----TTTATATTTTTGTTTCCATCTTTA----GTCGATCTTCAGAGCTTT  81

seq1  CCACCGAATGGCTTCCAGTGTTACAGCTGTGAGGGGAACAATACCCTTGG  150
      |||||| |||   ||||||| |||||||||||||||||| ||||||||| 
seq2  CCACCG-ATG--CTCCAGTGGTACAGCTGTGAGGGGAAC-ATACCCTTGA  127

seq1  GTGTTCCTCCGAAGAGGCGTCTCTCATCAACTGCCGGGGACCAATGAATC  200
      ||||| ||||||||| |||||||||||| |||||||||||||||||||||
seq2  GTGTT-CTCCGAAGA-GCGTCTCTCATC-ACTGCCGGGGACCAATGAATC  174

seq1  AGTGCCTGGTGGCTACAGGCTTAGATGGTGAGGCCCTGTGGGAGCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGGTGGCTACAGGCTTAGATGGTGAGGCCCTGTGGGAGCTGGAA  224

seq1  GGGGACCCACTGAGGCACTGAGCGCTGATAAGACTGATTGACAGATGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCCACTGAGGCACTGAGCGCTGATAAGACTGATTGACAGATGGTC  274

seq1  CGGTTGGATCTTCCTATGGTAAAGGCGACACTTTAGCTGGGGATGGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGGATCTTCCTATGGTAAAGGCGACACTTTAGCTGGGGATGGTGGT  324

seq1  ACACAGTTTACTCCCAGCACTTGGGAATCAGAGGTAGGTGGATCTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTTACTCCCAGCACTTGGGAATCAGAGGTAGGTGGATCTCTGGG  374

seq1  TTTGAGGACAGCCTGGTCCATACAGAGAGGCCCTGTCTGGGGGGTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGACAGCCTGGTCCATACAGAGAGGCCCTGTCTGGGGGGTGGGGA  424

seq1  GGAGGCGGTGTCTACCTGCAAAAAGGACAAATTGCAACAAGAGAGTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGGTGTCTACCTGCAAAAAGGACAAATTGCAACAAGAGAGTTTGC  474

seq1  CTCTGTGGAGCCAACAAGAATAATACACTTCATTACACCCTAATGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAGCCAACAAGAATAATACACTTCATTACACCCTAATGTTTCT  524

seq1  CTTTGAGACTGGGTCTTACTCTGTCGCCCTGGCTGCCCTGGAACTCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACTGGGTCTTACTCTGTCGCCCTGGCTGCCCTGGAACTCACTC  574

seq1  TGTAGACCAGGCTGGCGTCAAACCGAGAGATCTGCCTGCCACTGCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCGTCAAACCGAGAGATCTGCCTGCCACTGCCTTCT  624

seq1  GAGTGCTGGGATTAAAGGTGTGCACTACCATAGCTGGTCTCATAAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGTGTGCACTACCATAGCTGGTCTCATAAATAAT  674

seq1  AGTTTTGAT-GGGGGGGGGGTGCCTGTGTTTTTCATAATGAAAAAGTGCA  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGATGGGGGGGGGGGTGCCTGTGTTTTTCATAATGAAAAAGTGCA  724

seq1  AAGAGAGTGCTGTCATTGTTTACTGTGTGGCAACCCTCTTCCCGTCTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTGCTGTCATTGTTTACTGTGTGGCAACCCTCTTCCCGTCTGGC  774

seq1  TCTAATAGCAGACAGCTGGTCCCCGGCTCTGCTTTCGTGTTCCGCCTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGCAGACAGCTGGTCCCCGGCTCTGCTTTCGTGTTCCGCCTGTT  824

seq1  GCAATATCATGTCCTGGGGTTTCTCTGGAAAAGTATCTCTTGTACACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATCATGTCCTGGGGTTTCTCTGGAAAAGTATCTCTTGTACACACA  874

seq1  AAAAGCTTGGAAGGGCCAAATGACATCTCAGTGTTACTATGAAATCAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTGGAAGGGCCAAATGACATCTCAGTGTTACTATGAAATCAATC  924

seq1  CTGGTGTGAGTCTGAGGCACTGCCAGGGGTTCCTGGAACACACTTTGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGAGTCTGAGGCACTGCCAGGGGTTCCTGGAACACACTTTGGGA  974

seq1  AGCCCTGCTCCCAACAGGGAACTGGTGGTTGGCGATGGCGTCCACCACCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCTCCCAACAGGGAACTGGTGGTTGGCGATGGCGTCCACCACCA  1024

seq1  GGAGCCTGTCACTTTCCTGAGAATTC  1075
      ||||||||||||||||||||||||||
seq2  GGAGCCTGTCACTTTCCTGAGAATTC  1050