BAC Information

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BAC

Clone NameB6Ng01-059E17
Chromosome7 (Build37)
Map Location 148,000,453 - 148,001,359
singlet/doubletsinglet
Overlap geneBC066028
Upstream geneGpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529
Downstream gene1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059E17.b
ACCDH880619
length911
definitionDH880619|Mus musculus domesticus DNA, BAC clone: B6Ng01-059E17, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctacttgttttggctgagccaaggacatgctgggtagagatcaa
aacacctgcattctactagaggaagcaggacagaaggagagaagttgtcc
tctggcttctacatccaccccgcacacatgcttgcacgattttacgtata
cacacatacatattatatatgtatacacatacctatactcccgccccccc
gtacctggaatagaaagatttctataaataacaaaggctatgaaattgga
aatttgagaaccaatatgctatccaaattcaaaaacctcaacttctccaa
ctgggattatctaaaaaagattcaaaatgaagcacattctaaccaaagtt
tcaaaagtcacaaagaatcctgagagggactggaagcaataaatatgccg
tctgcaaggatgctctggtgactgctttgttattcaggcagaaaatgcag
tcaaggagagctggggatgcagagctaaaagaacaaaaactaccaacaac
actgtacccagcaaagggccatcaacggtgaaggggatgtcctacacttg
actattccagggagtcctgaccactgaacaataatctaatgctggaaggt
tacacaaatcataggaaatcttaaagctctctgagaaaaacaaatactta
tataaatatagaatcctctagttctctcgtgatggcacataaaatatttt
taattcctttatagactatgaaagaaaaaatataaccaccataaaaactg
ataaatagctatgtaatataaagtagctctcttaaagtgaaagctacgat
tttgatgggattagagacattttattaccaattgaagtagtttatacata
aaatgctttttatatccccttagaattgtaaatacttatagaagatagag
gacatagaaaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148000453_148001359
seq2: B6Ng01-059E17.b_59_953

seq1  TGGCTGAGCCAAGGACATGCTGGGTAGAGATCAAAAGACCTGCATTAATA  50
      |||||||||||||||||||||||||||||||||||| |||||||||  ||
seq2  TGGCTGAGCCAAGGACATGCTGGGTAGAGATCAAAACACCTGCATT-CTA  49

seq1  CTAGAAACCAGCAGGACAGAAGGAGAGAAGTTGTCCTCTGGCTTCTACAT  100
      |||| |   |||||||||||||||||||||||||||||||||||||||||
seq2  CTAG-AGGAAGCAGGACAGAAGGAGAGAAGTTGTCCTCTGGCTTCTACAT  98

seq1  CCACACAGCACACATGCATGCTCACATATACTTATACACACATACATATT  150
      |||| | |||||||||| ||| |   | ||| ||||||||||||||||||
seq2  CCACCCCGCACACATGCTTGCACGATTTTACGTATACACACATACATATT  148

seq1  ATATATATATACACATACATATACGCACGCACACACATAAGTGTAATAGA  200
      |||||| ||||||||||| ||||| | ||| | | | ||  || ||||||
seq2  ATATATGTATACACATACCTATACTCCCGCCCCCCCGTACCTGGAATAGA  198

seq1  AAGATTTCTATAAATAACAATGGCTATGAAATTGGAAGTATGAGAACCAG  250
      |||||||||||||||||||| |||||||||||||||| | ||||||||| 
seq2  AAGATTTCTATAAATAACAAAGGCTATGAAATTGGAAATTTGAGAACCAA  248

seq1  TATGCTATCAAAATTCAAAAACCTCAACATCTCCAACTGGGATTATCAGA  300
      ||||||||| |||||||||||||||||| ||||||||||||||||||  |
seq2  TATGCTATCCAAATTCAAAAACCTCAACTTCTCCAACTGGGATTATCTAA  298

seq1  AAAAGATTCAAAATGAAGCACATTCTAACCAGAGTTTCAAAAGTCACAAA  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAAGATTCAAAATGAAGCACATTCTAACCAAAGTTTCAAAAGTCACAAA  348

seq1  AAATCCTGAGAGGCACTGGAAGCAATAAATATGCCGTCTGCAAGGATGCT  400
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGAGAGGGACTGGAAGCAATAAATATGCCGTCTGCAAGGATGCT  398

seq1  CTGGTGACTGCTTTGTTATTCAGGCAGAAAATGCAGTCAAGGAGAGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACTGCTTTGTTATTCAGGCAGAAAATGCAGTCAAGGAGAGCTGG  448

seq1  GGATACAGAGCTAAAAGAACAAAAACAACCAAGAACACTGTAGCCAGCAA  500
      |||| ||||||||||||||||||||| ||||| ||||||||| |||||||
seq2  GGATGCAGAGCTAAAAGAACAAAAACTACCAACAACACTGTACCCAGCAA  498

seq1  AGGGCCATCAACAGTGAAGGGGATGTCCTACACTTGACTATTCCAGGGAG  550
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATCAACGGTGAAGGGGATGTCCTACACTTGACTATTCCAGGGAG  548

seq1  TCCTGACCACTGAAGAATAATCTAATGCTGGAAGGTTACACAAATCATAG  600
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTGACCACTGAACAATAATCTAATGCTGGAAGGTTACACAAATCATAG  598

seq1  GAAATCTTAAAGCTCTCTGAGAAAAACAAATACTTATATAAATATAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTAAAGCTCTCTGAGAAAAACAAATACTTATATAAATATAGAAT  648

seq1  CCTCTAGTTCTCTCATGATGGCACATAAAATATTTTTAATTCCTTTATAG  700
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTTCTCTCGTGATGGCACATAAAATATTTTTAATTCCTTTATAG  698

seq1  ACTATGAAAGAAAAAATATAACCACCATAAAAACTGATAAATAGCTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAAGAAAAAATATAACCACCATAAAAACTGATAAATAGCTATGT  748

seq1  AATATAAAGTAGCTCTCTTAAAGTAAAAGCTAAGGATTTTATATGGGATT  800
      |||||||||||||||||||||||| |||||| | ||||||  ||||||||
seq2  AATATAAAGTAGCTCTCTTAAAGTGAAAGCT-ACGATTTT-GATGGGATT  796

seq1  AAAGTCAATTTATTACCAATTTGAAGTAGTTTTATACATTTAAAATGCTT  850
      | || || ||||||||||| ||||||||| ||||||||  |||||||| |
seq2  AGAGACATTTTATTACCAA-TTGAAGTAG-TTTATACA--TAAAATGC-T  841

seq1  TTTTATATTCCCCTTATAAATTGCAAAATACTTATAGAAGATAAAGGAAA  900
      ||||||| ||||||||  |||||  |||||||||||||||||| |||| |
seq2  TTTTATA-TCCCCTTA-GAATTG-TAAATACTTATAGAAGATAGAGGACA  888

seq1  TAGAAAA  907
      |||||||
seq2  TAGAAAA  895