BAC Information

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BAC

Clone NameB6Ng01-059K17
Chromosome7 (Build37)
Map Location 20,519,110 - 20,519,784
singlet/doubletsinglet
Overlap genenone
Upstream geneNova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr
Downstream gene2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K17.bB6Ng01-059K17.g
ACCDH880877DH880878
length674980
definitionDH880877|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K17, 5' end.DH880878|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaatatagtaagcactctttaagtactcactaccagtctatta
aggatagtagcaagggggctggtgagatggctcagcggttaagagcaccg
actgctcttcctaaggtcctgagttcaagtcccagcaaccacatggtggc
tcacaaccatctgtaacgagatctgactccctcttctggagtgtctgaag
atagctacagtgtacttacatctaataataattaaaaaaaaaaaaaaaag
gatagtagcaagggttgagagcatgagctggtcttacagaggacccaagt
ttttagttcccagtaccccatctggtgactggcaactgcctgtaattcta
gctgccagggacccaacatgtcctccgaatttgcatgagcactgtacaca
cacacacacacacacacacacacacttaaaagtaaaatatttttttaaaa
aagtagatgtgaaaactgagactgaggcgaggggcctggcgaacagaagt
acctaagtacggacgtacgttggctccttcatcctctcacctgcccttag
acctcgtttcctgaggagatgatgacaaatatccagtcaccccactaagg
gggctgatgacagaccatcattgggtaccaccacggtccaactcgatgat
caatgacttgtattggggttactt
gaattcttgccggcaagatactagctcgggcaagagcccaggagaggtat
tgctgaatcctctagtagtactatgtccaaatttctgaggaactgccaga
ctgatttccagagtggttgtacaagcttgcaatcccaccaacagtggagg
agtattcctctttctccagcatcctcaccagcatctgctgtcccctaagc
tggaaaggaaccagatgtccctcagcagaggaatggatacagaaaatgtg
gtaaatttacacaatggagtactactcagctattaaagacaatgaattta
tgaaattcctaggcaaatggatggatctggagggtatcatcctgagtgag
gtaacccaatcacaaaagaacgcacattgatatgcactcactgataagtg
gattattagcccagaaacttagaatacccaagatacaatttgcaaaacac
atgaaactcaagaaggaagaccaaagtatggatacttcaccccttagaat
ggggaacaaaatacccatgggaggagttacagagacaaagtttggagctg
agacaaaagaatggaccatccagagactgcctcaccaggggatccatccc
ataatcagtcaccaaacacagacactattgcatatgccagcaagattttg
ctgaaaggaccatgatatagttgtctctcgtgaggctatgccagtgcctg
gcaaacacagaagtggatgctcacagtcagctattagatggaacacaagg
cccccaatggaggagctaggaaaggtacccaaggatctgaaggggtctgc
aaccctataggtggaccacaatatgaactaaccagtaccctcagagctcg
tgctctgctgcatatgtttcagaagatggcctagttggccattattggaa
gagagctccttggtcttgcaactttattgcctatacagggaatgcagtgt
ccaaaattgggattgggtaagtataattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20519110_20519784
seq2: B6Ng01-059K17.b_49_722

seq1  GAATTCTTAATATAGTAAGCACTCTTTAAGTACTCACTACCAGTCTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATATAGTAAGCACTCTTTAAGTACTCACTACCAGTCTATTA  50

seq1  AGGATAGTAGCAAGGGGGCTGGTGAGATGGCTCAGCGGTTAAGAGCACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGTAGCAAGGGGGCTGGTGAGATGGCTCAGCGGTTAAGAGCACCG  100

seq1  ACTGCTCTTCCTAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCTAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTGGC  150

seq1  TCACAACCATCTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAG  200

seq1  ATAGCTACAGTGTACTTACATCTAATAATAATTAAAAAAAAAAAAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTACAGTGTACTTACATCTAATAATAATTAAAAAAAAAAAAAAAAG  250

seq1  GATAGTAGCAAGGGTTGAGAGCATGAGCTGGTCTTACAGAGGACCCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAGCAAGGGTTGAGAGCATGAGCTGGTCTTACAGAGGACCCAAGT  300

seq1  TTTTAGTTCCCAGTACCCCATCTGGTGACTGGCAACTGCCTGTAATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCCCAGTACCCCATCTGGTGACTGGCAACTGCCTGTAATTCTA  350

seq1  GCTGCCAGGGACCCAACATGTCCTCCGAATTTGCATGAGCACTGTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGGACCCAACATGTCCTCCGAATTTGCATGAGCACTGTACACA  400

seq1  CACACACACACACACACACACACACTTAAAAGTAAAATATTTTTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTTAAAAGTAAAATATTTTTTTAAAA  450

seq1  AAGTAGATGTGAAAACTGAGACTGAGGCGAGGGGCCTGGCGAACAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGTGAAAACTGAGACTGAGGCGAGGGGCCTGGCGAACAGAAGT  500

seq1  ACCTAAGTACGGACGTACGTTGGCTCCTTCATCCTCTCACCTGCCCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTACGGACGTACGTTGGCTCCTTCATCCTCTCACCTGCCCTTAG  550

seq1  ACCTCGTTTCCTGAGGAGATGATGACAAATATCCAGTCACCCCACTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGTTTCCTGAGGAGATGATGACAAATATCCAGTCACCCCACTAAGG  600

seq1  GGGCTGATGACAGACCATCATGTGGGTACCACCACGGTCCAACTCGATGA  650
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  GGGCTGATGACAGACCATCAT-TGGGTACCACCACGGTCCAACTCGATG-  648

seq1  ACCAATGACTTGTATT-GGGTTACTT  675
      | |||||||||||||| |||||||||
seq2  ATCAATGACTTGTATTGGGGTTACTT  674