BAC Information

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BAC

Clone NameB6Ng01-059N13
Chromosome7 (Build37)
Map Location 71,996,081 - 71,997,177
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik
Downstream geneNdnl2, Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059N13.bB6Ng01-059N13.g
ACCDH881003DH881004
length9961,065
definitionDH881003|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N13, 5' end.DH881004|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcaatggcgcttaagctaccatgtgtctaggaagcaccaatga
cattcattcagaatggtagaatgaatgctggaatttactgcaggctttca
ggcttgggggctgctggcaggtgctaggattctggcttctgtgtcttaag
tagaaatagttaacagaggtgacagtagtcaggaaggtgtggaaggccat
aatgccaagtgtccataccgtgaacatgttagaagcaccatttatatacc
attttcctatggtcttttgtaggaggaagacacatcatagcggctttcag
aaacactgaaatttctctggtattcttatagtgtttaaaaatcagagtct
cagatggtaggttaaaagttcagtctcttctgtccttcagtaggatgggt
aaattagcaggtgcatacagagaggtagtgcttggtgttaaaagaaatga
cctatcaagccaggagaagacaagggaaaacctgaaatgcttatcaccaa
agcaaaggagccatccaggaaaggctgcatggctttgataaaagtcaatt
tgtggagaaggtcaaaagatcagaagttacaagggagtggagaaggtcaa
aagatgggaagttacaagggagcagagaaagtcaataatcaggagttaca
gaaaagggatacgtaggcaaaacagtgttcttagggcagtgaaatgcttt
tgttgctgctgtgactgtgaatacacatcattacacatgtgtctgagcca
cagaatgcttaacaccaagagtgggtcccaacataagccctagacttgga
gtcttaatgattaatcagtggggttcctgatgataactcatgtgccttcc
tggtggggggtgttggtagcaggggaggctatgaatatgctgagggaagt
acagaggggaagttcagtccccctgctcattttactatggacctaactat
aaaataaatctataaaggcttaatttgacattgcaagatgtcctga
gaattcatgtggaaattcagcaaggcacacaactgtctggcaaaagcaat
gtgcctatgtgtaaatagtgatacacgtaataatgatatactcacacaca
cacacacacacacacacacacacacacacacacacaccacaccatgcatg
aaataatggctagaaaggtaagaagaaactgttggttgctacttctggaa
gacagggcatatttgagatgtttagagtaaaaaaaaaaattaattatttt
cacttaaatatcttttttatgcagagaaaactagatgactttaaattatg
catagaaaagagacataaacactacatgtccatatgattatgtatgagct
attctaaagagaactaaaaaccacaattaactattagttgagaaaattta
gataaaacaaaacatacactgtgtcttggttgggaaggcaaaaaactgtc
taagatcaattcttgaagctatgtataaacattatatgattccaattaaa
atatcatatcatttattttgattcctggctccctgaaaatgtcaaaggtc
atcttggaaagtaaacatttaagaacagccaagaatgattttaagaagta
ggctaaatgcttgtgacaggtatgagggcagggatttccaaccaattata
aaacttgagaagataatttgctggacatgagatgtacctttaacctcagc
tcttgtagggtggcaccaggtgggtctctgtggttttgaggcaagcctgg
actacttaatgagtttcagtcaagtcagggcgacaaaatgacatcctatt
tcaaaaaacaagaagataaaaaagaaagtaatgatggccagaaacaaaat
tgggacagaatcagaagcccagaagtagataaatgggtcctccctgccca
tgtgtatctgagtcatgcatccagggccctgggagggtagacactagctg
catgttggtgatcatcaataacacttctgtttcaccatttcttatgtgac
aaatatgacagaacacttaaagagaaggctagtttgccacgttgagtaca
acttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71996081_71997177
seq2: B6Ng01-059N13.g_70_1134

seq1  GAATTCATGTGGAAATTCAGCAAGGCACACAACTGTCTGGCAAAAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGGAAATTCAGCAAGGCACACAACTGTCTGGCAAAAGCAAT  50

seq1  GTGCCTATGTGTAAATAGTGATACACGTAATAATGATATACTCACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTATGTGTAAATAGTGATACACGTAATAATGATATACTCACACACA  100

seq1  CACACACACACACACACACACACACACACACACACACCACACCATGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACCACACCATGCATG  150

seq1  AAATAATGGCTAGAAAGGTAAGAAGAAACTGTTGGTTGCTACTTCTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGGCTAGAAAGGTAAGAAGAAACTGTTGGTTGCTACTTCTGGAA  200

seq1  GACAGGGCATATTTGAGATGTTTAGAGTAAAAAAAAAAATTAATTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCATATTTGAGATGTTTAGAGTAAAAAAAAAAATTAATTATTTT  250

seq1  CACTTAAATATCTTTTTTATGCAGAGAAAACTAGATGACTTTAAATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAATATCTTTTTTATGCAGAGAAAACTAGATGACTTTAAATTATG  300

seq1  CATAGAAAAGAGACATAAACACTACATGTCCATATGATTATGTATGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAAGAGACATAAACACTACATGTCCATATGATTATGTATGAGCT  350

seq1  ATTCTAAAGAGAACTAAAAACCACAATTAACTATTAGTTGAGAAAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGAGAACTAAAAACCACAATTAACTATTAGTTGAGAAAATTTA  400

seq1  GATAAAACAAAACATACACTGTGTCTTGGTTGGGAAGGCAAAAAACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACAAAACATACACTGTGTCTTGGTTGGGAAGGCAAAAAACTGTC  450

seq1  TAAGATCAATTCTTGAAGCTATGTATAAACATTATATGATTCCAATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAATTCTTGAAGCTATGTATAAACATTATATGATTCCAATTAAA  500

seq1  ATATCATATCATTTATTTTGATTCCTGGCTCCCTGAAAATGTCAAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATATCATTTATTTTGATTCCTGGCTCCCTGAAAATGTCAAAGGTC  550

seq1  ATCTTGGAAAGTAAACATTTAAGAACAGCCAAGAATGATTTTAAGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAAAGTAAACATTTAAGAACAGCCAAGAATGATTTTAAGAAGTA  600

seq1  GGCTAAATGCTTGTGACAGGTATGAGGGCAGGGATTTCCAACCAATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATGCTTGTGACAGGTATGAGGGCAGGGATTTCCAACCAATTATA  650

seq1  AAACTTGAGAAGATAATTTGCTGGACATGAGATGTACCTTTAACCTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAGAAGATAATTTGCTGGACATGAGATGTACCTTTAACCTCAGC  700

seq1  TCTTGTAGGGTGGCACCAGGTGGGTCTCTGTGGTTTTGAGGCAAGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGGGTGGCACCAGGTGGGTCTCTGTGGTTTTGAGGCAAGCCTGG  750

seq1  ACTACTTAATGAGTTTCAGTCAAGTCAGGGCGACAAAATGACATCCTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTACTTAATGAGTTTCAGTCAAGTCAGGGCGACAAAATGACATCCTATT  800

seq1  TCAAAAAACAAGAAGATAAAAAAGAAAGTAATGAATGGCCAGAAACAAAA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAAAAAACAAGAAGATAAAAAAGAAAGTAATG-ATGGCCAGAAACAAAA  849

seq1  TTGGGACAGAATCAGAAGCCCAGAAGTAGATAAATGGGT-CTCCCTGCCC  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGGGACAGAATCAGAAGCCCAGAAGTAGATAAATGGGTCCTCCCTGCCC  899

seq1  ATGTGTATCTGAGTTCATGCATCCAAGGGCACTGGGAGGGTAGACACTAG  949
      ||||||||||||| |||||||||| ||||| |||||||||||||||||||
seq2  ATGTGTATCTGAG-TCATGCATCC-AGGGCCCTGGGAGGGTAGACACTAG  947

seq1  CTGCATGTTGGTTGATCATCCATTATACACTTCTTGTTTCCACCACTTTT  999
      ||||||||||| |||||||| ||   ||||||| ||||| |||||   ||
seq2  CTGCATGTTGG-TGATCATCAAT--AACACTTC-TGTTT-CACCA---TT  989

seq1  CCTTATTGTTGTAACAAAATACATGACAAGAAACAACTTAAAAGAGGAAG  1049
       ||||    ||| ||||   | ||||| ||||   |||| ||||| ||||
seq2  TCTTA----TGTGACAA---ATATGAC-AGAA--CACTT-AAAGA-GAAG  1027

seq1  GCTTAGTTTGGCCCACAGTTTGAGGTTACAATACCTTGGGGGGGGGGG  1097
      || |||||||  ||||   |||||  |||||   ||||||||||||||
seq2  GC-TAGTTTG--CCAC--GTTGAG--TACAA---CTTGGGGGGGGGGG  1065