BAC Information

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BAC

Clone NameB6Ng01-060F04
Chromosome7 (Build37)
Map Location 7,189,729 - 7,346,493
singlet/doubletdoublet
Overlap gene6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
Upstream geneZfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179
Downstream geneVmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060F04.bB6Ng01-060F04.g
ACCDH881326DH881327
length1,1171,079
definitionDH881326|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F04, 5' end.DH881327|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,345,288 - 7,346,493)(7,189,729 - 7,190,828)
sequence
gaattcatagactagcaatgaaaatgggtggttttatacagagcatgtga
atatccatcagcataccccttccaatattgaatataaactatccttactc
attaattttctccatgattagaagatgagtttttatttatatttgtcagt
tatatggaaatcatttaaggagtggtctccagtgattctaccaagagtgt
aggctctggagatcattctgggttttctgagagtaactaaacaagaaata
gtgttggtattcagttctgtctgtagaaaagtgtttatatgtgtgaatgt
atgtttctcactgtgtatatgtctattttctactctttctgtgtatctgt
gtttatacttgtgatactttcaacatacatgtttatctctatatgaaagt
ggaagtaagcgacaattttttctatgtaggaatttctttctataagtgtg
tttgtttatatatgtgcatatgtttctttgtggttttgtctgagtaggtt
tctttgtgtacattgtgtgtattttgtgagtgtttataagtacttatacg
gatttgtacctgctttgctgtgtatgagtctgcctatttcttcttacttg
gcatggacattgcctgcctttttgtatttaggtttgagtataaatttctc
tatgtgtcaatatcattcatggctggtgcttatatatttatgcctctccc
agtgtttttatgtcaacgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtg
ttgcatagctgtgtttggttctgcttttttctgtgtttggtattcttgac
tgagaggattgaaattcttgaaatattattgataatttcattttatccaa
ttgctttgttgtgatttccctcttttctgtctttctttcttttaaatgta
gtgcctttgctataaaatgagaatgcatttatgactggaagtattttaaa
tacataatagtacatgcttgtatttaagtaaactctttctagaaagatcc
acttcactattctctttggggacaagtgattatgaacaaggagtattatg
gcaggaagaatatgacattttcatttcgaatctctcaaactccttgggat
tatgggcaagtagaaag
gaattccaggtcagccaggactatacaatgaaaccctgtctcaaaaaaaa
aatcaaaacaaaacaaaaacccaaaacaaaaaccaaaaaacaaaacaaaa
ggcatcaatgttttttaagagccaaacgataatcagtttatatgttctta
tagatatgttagtttatagtattatattcagactattgtcatgcttattg
aaaattgttagcctaattttacatcatgaatggagctataaaatactaat
ttttatacctttcttatttaaacatgaatcttaatgtcttcatttgctga
caattaacatagaagtttgtaacaaaactcaagatcaccatcctttagag
caccactctactataatgtgaccttgaagggaaaaaatccaatagggaag
taaaacttaagcataaagcaccacttaagacgacctgataaaaactttgc
gatgcttcaggtagagaaagctcagaataagagctcagaatgtctggaga
aagaatgatgtcaaaagataattccccattcctacattgcctggagtagg
tcatgcaatgatgtcttaaatgtgcaaaataaagaaagagttaggatata
caacttgaaaattaaccctgataataaaactaggtttgtttttgccttta
gccttctttaaaaagtataccagttgaatgttaggaatataattgcaatt
ttttttataaaagtcctactatatatcaggcacaaaggtaaaaataataa
atttctctatatataaacttgctatttacttactgtttctccatataaga
tattaaagtatactctgataaatgatgcttatatgtccatgcagtgtgac
acatggacacatattaggggtatctaactctcatttatggtcaagtagta
cttcctaaatatgttatagaagcacactccaaaataattattttctgagt
gatgataggagttgacaaaatccaaagtagggaaggatgagcatcaggag
tatcagcagttttgagaatattactctaattatagcacaaaacgagattg
gtctcatcccagaatcctcaattctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7345288_7346493
seq2: B6Ng01-060F04.b_45_1161 (reverse)

seq1  CTTTCTACTTCCTGTGGCAACCTCAAGCATGTCTACATATAAGTGAAAGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCGACCATGTGAAAAATATGGGCTGAACTTTCCTAACTTCACCTTAATC  100
                                  |||||   ||||  || |||||
seq2  ----------------------------CTTTC--TACTTGCCCATAATC  20

seq1  CCAAGGTGTTGTGAGAGATTCCCAAAATGGAAAATGTCATATTCTTCCTG  150
      |||||| ||| |||||||||  | |||| |||||||||||||||||||||
seq2  CCAAGGAGTT-TGAGAGATT--CGAAAT-GAAAATGTCATATTCTTCCTG  66

seq1  CATTATTACTCTTTGTTTCATAATCACTTTGTCCCCAAGAGGATTAGTGA  200
      |  || ||||| ||| ||||||||||| ||||||||||   || ||||||
seq2  CCATAATACTCCTTG-TTCATAATCAC-TTGTCCCCAAAGAGAATAGTGA  114

seq1  AGTGGATCTTTCTTAGAAAGGAGTTTACCTAAAATACAAGCATTGTACTA  250
      |||||||||||| |||||| ||||||| || ||||||||||| |||||||
seq2  AGTGGATCTTTC-TAGAAA-GAGTTTA-CTTAAATACAAGCA-TGTACTA  160

seq1  TTATGTATTTAAAATACTTTCAAGTCATAAAATGCATTCTCATTTTATAG  300
      ||||||||||||||||| ||| |||||| |||||||||||||||||||||
seq2  TTATGTATTTAAAATAC-TTCCAGTCAT-AAATGCATTCTCATTTTATAG  208

seq1  CAAAGGCAACTACATTT-AAAGAAAGAAAGACAG-AAAGAGGGAAATCAC  348
      ||||||| ||||||||| |||||||||||||||| |||||||||||||||
seq2  CAAAGGC-ACTACATTTAAAAGAAAGAAAGACAGAAAAGAGGGAAATCAC  257

seq1  AACAAAGCAATTGGAT-AAATGAAATTATC-ATAATATTTCAAGAATTTC  396
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AACAAAGCAATTGGATAAAATGAAATTATCAATAATATTTCAAGAATTTC  307

seq1  AATCCTCTCAGTCAAGAATACCAAACACAGAAAAAAGCAGAACCAAACAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTCAGTCAAGAATACCAAACACAGAAAAAAGCAGAACCAAACAC  357

seq1  AGCTATGCAACACACACATACACACACACAGACACACACACACGTTGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCAACACACACATACACACACACAGACACACACACACGTTGACA  407

seq1  TAAAAACACTGGGAGAGGCATAAATATATAAGCACCAGCCATGAATGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACACTGGGAGAGGCATAAATATATAAGCACCAGCCATGAATGATA  457

seq1  TTGACACATAGAGAAATTTATACTCAAACCTAAATACAAAAAGGCAGGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACATAGAGAAATTTATACTCAAACCTAAATACAAAAAGGCAGGCA  507

seq1  ATGTCCATGCCAAGTAAGAAGAAATAGGCAGACTCATACACAGCAAAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATGCCAAGTAAGAAGAAATAGGCAGACTCATACACAGCAAAGCA  557

seq1  GGTACAAATCCGTATAAGTACTTATAAACACTCACAAAATACACACAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAATCCGTATAAGTACTTATAAACACTCACAAAATACACACAATG  607

seq1  TACACAAAGAAACCTACTCAGACAAAACCACAAAGAAACATATGCACATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAGAAACCTACTCAGACAAAACCACAAAGAAACATATGCACATA  657

seq1  TATAAACAAACACACTTATAGAAAGAAATTCCTACATAGAAAAAATTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAACACACTTATAGAAAGAAATTCCTACATAGAAAAAATTGTC  707

seq1  GCTTACTTCCACTTTCATATAGAGATAAACATGTATGTTGAAAGTATCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTCCACTTTCATATAGAGATAAACATGTATGTTGAAAGTATCAC  757

seq1  AAGTATAAACACAGATACACAGAAAGAGTAGAAAATAGACATATACACAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAACACAGATACACAGAAAGAGTAGAAAATAGACATATACACAG  807

seq1  TGAGAAACATACATTCACACATATAAACACTTTTCTACAGACAGAACTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACATACATTCACACATATAAACACTTTTCTACAGACAGAACTGA  857

seq1  ATACCAACACTATTTCTTGTTTAGTTACTCTCAGAAAACCCAGAATGATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAACACTATTTCTTGTTTAGTTACTCTCAGAAAACCCAGAATGATC  907

seq1  TCCAGAGCCTACACTCTTGGTAGAATCACTGGAGACCACTCCTTAAATGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCCTACACTCTTGGTAGAATCACTGGAGACCACTCCTTAAATGA  957

seq1  TTTCCATATAACTGACAAATATAAATAAAAACTCATCTTCTAATCATGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATAACTGACAAATATAAATAAAAACTCATCTTCTAATCATGGA  1007

seq1  GAAAATTAATGAGTAAGGATAGTTTATATTCAATATTGGAAGGGGTATGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAATGAGTAAGGATAGTTTATATTCAATATTGGAAGGGGTATGC  1057

seq1  TGATGGATATTCACATGCTCTGTATAAAACCACCCATTTTCATTGCTAGT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATATTCACATGCTCTGTATAAAACCACCCATTTTCATTGCTAGT  1107

seq1  CTATGAATTC  1206
      ||||||||||
seq2  CTATGAATTC  1117

seq1: chr7_7189729_7190828
seq2: B6Ng01-060F04.g_67_1145

seq1  GAATTCCAGGTCAGCCAGGACTATACAATGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCAGGACTATACAATGAAACCCTGTCTCAAAAAAAA  50

seq1  AATCAAAACAAAACAAAAACCCAAAACAAAAACCAAAAAACAAAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACAAAACAAAAACCCAAAACAAAAACCAAAAAACAAAACAAAA  100

seq1  GGCATCAATGTTTTTTAAGAGCCAAACGATAATCAGTTTATATGTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAATGTTTTTTAAGAGCCAAACGATAATCAGTTTATATGTTCTTA  150

seq1  TAGATATGTTAGTTTATAGTATTATATTCAGACTATTGTCATGCTTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGTTAGTTTATAGTATTATATTCAGACTATTGTCATGCTTATTG  200

seq1  AAAATTGTTAGCCTAATTTTACATCATGAATGGAGCTATAAAATACTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTTAGCCTAATTTTACATCATGAATGGAGCTATAAAATACTAAT  250

seq1  TTTTATACCTTTCTTATTTAAACATGAATCTTAATGTCTTCATTTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACCTTTCTTATTTAAACATGAATCTTAATGTCTTCATTTGCTGA  300

seq1  CAATTAACATAGAAGTTTGTAACAAAACTCAAGATCACCATCCTTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACATAGAAGTTTGTAACAAAACTCAAGATCACCATCCTTTAGAG  350

seq1  CACCACTCTACTATAATGTGACCTTGAAGGGAAAAAATCCAATAGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCTACTATAATGTGACCTTGAAGGGAAAAAATCCAATAGGGAAG  400

seq1  TAAAACTTAAGCATAAAGCACCACTTAAGACGACCTGATAAAAACTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAAGCATAAAGCACCACTTAAGACGACCTGATAAAAACTTTGC  450

seq1  GATGCTTCAGGTAGAGAAAGCTCAGAATAAGAGCTCAGAATGTCTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCAGGTAGAGAAAGCTCAGAATAAGAGCTCAGAATGTCTGGAGA  500

seq1  AAGAATGATGTCAAAAGATAATTCCCCATTCCTACATTGCCTGGAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATGTCAAAAGATAATTCCCCATTCCTACATTGCCTGGAGTAGG  550

seq1  TCATGCAATGATGTCTTAAATGTGCAAAATAAAGAAAGAGTTAGGATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAATGATGTCTTAAATGTGCAAAATAAAGAAAGAGTTAGGATATA  600

seq1  CAACTTGAAAATTAACCCTGATAATAAAACTAGGTTTGTTTTTGCCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAAAATTAACCCTGATAATAAAACTAGGTTTGTTTTTGCCTTTA  650

seq1  GCCTTCTTTAAAAAGTATACCAGTTGAATGTTAGGAATATAATTGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTTAAAAAGTATACCAGTTGAATGTTAGGAATATAATTGCAATT  700

seq1  TTTTTTATAAAAGTCCTACTATATATCAGGCACAAAGGTAAAAATAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAAAAGTCCTACTATATATCAGGCACAAAGGTAAAAATAATAA  750

seq1  ATTTCTCTATATATAAACTTGCTATTTACTTACTGTTTCTCCATATAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTATATATAAACTTGCTATTTACTTACTGTTTCTCCATATAAGA  800

seq1  TATTAAAGTATACTCTGATAAATGATGCTTATATGTCCATGCAGTGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGTATACTCTGATAAATGATGCTTATATGTCCATGCAGTGTGAC  850

seq1  ACATGGACACATATTAGGGGTATCTAACTCTCATTTATGGTCAAGTAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGACACATATTAGGGGTATCTAACTCTCATTTATGGTCAAGTAGTA  900

seq1  CTTCCTAAATATGTTATAAGAAGCACAACTCCAAAAATAATTATTTTCTG  950
      ||||||||||||||||| |||||||| ||||| |||||||||||||||||
seq2  CTTCCTAAATATGTTAT-AGAAGCAC-ACTCC-AAAATAATTATTTTCTG  947

seq1  AGTGAATGATAGGAAGTTGACAAAAATCCAAAGTAGGGAAAGAATGAGCA  1000
      |||| |||||||| ||||||| |||||||||||||||| ||| |||||||
seq2  AGTG-ATGATAGG-AGTTGAC-AAAATCCAAAGTAGGG-AAGGATGAGCA  993

seq1  ATCCAGGAGTATCAGCAGTTTTTGAGGAATATTAACTCTAATATATTAGC  1050
         ||||||||||||||| |||||| ||||||| |||||||| || ||||
seq2  --TCAGGAGTATCAGCAG-TTTTGA-GAATATT-ACTCTAAT-TA-TAGC  1036

seq1  AAACAAAACGGAGAATTGGTCTCATCCCAGAAACCTCAAAAATCCTGTCT  1100
        ||||||| ||| |||||||||||||||||| ||||   ||| ||||||
seq2  --ACAAAAC-GAG-ATTGGTCTCATCCCAGAATCCTC---AATTCTGTCT  1079