BAC Information

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BAC

Clone NameB6Ng01-060H17
Chromosome7 (Build37)
Map Location 130,107,274 - 130,206,176
singlet/doubletdoublet
Overlap gene4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981
Upstream geneCog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3
Downstream geneTnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H17.bB6Ng01-060H17.g
ACCDH881444DH881445
length1,1841,103
definitionDH881444|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H17, 5' end.DH881445|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,107,274 - 130,108,469)(130,205,066 - 130,206,176)
sequence
gaattctgttctttttttttttggtttttcgagacagggtttctctgtgt
agccctgattgtcctggaactcactctgtagaccaggctggcctcaaact
cagaaatctgcctgtctctgcctcccaagtgctgggattaaaggccagaa
ttctgttcttaaagaggagactttattgatttgttgtgcaagtcttcagc
ctgagaagggagcaatggcagagataaggtaggcagtcaaagcaatcctt
tctttctttctttcttctttgttttagtcaaagtgtcctgaagcccgtac
tgactatgaactcccgatcttcccgcctccacctcctgaggttacaggtg
tgtatacatgggatgaacttagaccagggatcatcagccatttctaaaaa
tcatatttgtgatgtttctaaaaacagggaatgtggctgatgatgcagag
ctgagacctttcgtttttttacatgtgtttcccagaagtcctgacctgag
gatttatatctgtgatttgtcttattctttaataacatgattatgcttta
tcccccagagtctggccttttggactaatgtcgagctggactaattgaca
gcatttgtctccttatgtaggacaagtggcatagagggccccttgagacg
ccccatatgctctgggccctctttctgagatacctgttgcttcttaaggc
tggaggcaggatgtgggactcccccaacagggactgtttccttgttttcc
cagatgctgggcagaactctcctctccccttcagggcacaggtatttctg
tcatggtgttcttcccacaccctacagtaattcccaacctccacttgcca
tattgtatggcttctgagcccttccccagtgcatagatgcccctccccaa
cctagtggatctctgggatccctaagaagcttagatcttgagcacagagc
tgagagacttctgagcgctagtgtcttctccacacctaagattctttaca
taattactttattggtcttacctaacacctatctcggtggtgccctgtgg
cggggcctctgttgtaggcttaagacgtgtcaaccttgtgccaaaatcaa
aatcggaatggtcagctgaaaaaaaaaaaaaaaaaacagggatggtgtgg
gcgcataccaggccctgaaagtatgtgccgaaac
gaattccagatgtttgtatagttcacttgtattccagctgcctggtacac
agtgggttctcaactaataatcactgaatggatagaaaaaaatggaaatt
ctgcctcttaagagatatgaatacatattatcaatgagtggtatcagggc
ttacacctaacacttaggctatatctgacttatataacctagctgaattt
tgtttgccaatacgtggcttaagaaactccttgttagaaatatgtggaaa
tatatgaaaccagaggcctcctcctttcccattttgatgggctttacttc
ctgtctgcggtacagcattcctagtgaccaatgttagctaccattaacca
gcagacctctacaaacacctccagcagctctttgtctgtagtttcctcct
ggatcgccagaggagcctcctaattggtctcttggattccctccccctct
gacctccccatgcatccactgcaagcagccactgctttttatgacactgt
gcattgcattggtgagagcctgggtagcagagtggccagatgagtcacgg
ccacgctgtttggagatggacatgtctggccagaaaaaaaaaaaaaaaaa
aaaaaccaaaaaaccaaaaaaacaaaaacaaaacaaaaacaaaaacaaaa
acaaaaaaacccaccttcagaaggggatgtttgccatgggggtatggata
ttagttgctgtctttggatcttaggggctgaatttcaaatatttgatttc
aaccctattcaacacatcaggattgtgagtggctgcttcctctgttgact
cagtgcatatcagacacctcaggctgcaaggactgatccacaccccacac
tgtgagatacattacttgttccattcttcaggcagtgaagtatcttgaga
ttcaggacatctgggcttctaggctgggctctgctactagttgcatgact
taaggcaaatcacatcacttctctgggcctcgtgtccacacctgaaaatg
aaggaataaagattgtaatggccaccgaataccaatcctccacctcagac
acagctcagtgtgttttcatatgaatgcaggcctgtaagccactctgtgc
aac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_130107274_130108469
seq2: B6Ng01-060H17.b_42_1225

seq1  GAATTCTGTTCTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  50

seq1  AGCCCTGATTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGATTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACT  100

seq1  CAGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCAGAA  150

seq1  TTCTGTTCTTAAAGAGGAGACTTTATTGATTTGTTGTGCAAGTCTTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTTAAAGAGGAGACTTTATTGATTTGTTGTGCAAGTCTTCAGC  200

seq1  CTGAGAAGGGAGCAATGGCAGAGATAAGGTAGGCAGTCAAAGCAATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGGAGCAATGGCAGAGATAAGGTAGGCAGTCAAAGCAATCCTT  250

seq1  TCTTTCTTTCTTTCTTCTTTGTTTTAGTCAAAGTGTCCTGAAGCCCGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTCTTTGTTTTAGTCAAAGTGTCCTGAAGCCCGTAC  300

seq1  TGACTATGAACTCCCGATCTTCCCGCCTCCACCTCCTGAGGTTACAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATGAACTCCCGATCTTCCCGCCTCCACCTCCTGAGGTTACAGGTG  350

seq1  TGTATACATGGGATGAACTTAGACCAGGGATCATCAGCCATTTCTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATGGGATGAACTTAGACCAGGGATCATCAGCCATTTCTAAAAA  400

seq1  TCATATTTGTGATGTTTCTAAAAACAGGGAATGTGGCTGATGATGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTGTGATGTTTCTAAAAACAGGGAATGTGGCTGATGATGCAGAG  450

seq1  CTGAGACCTTTCGTTTTTTTACATGTGTTTCCCAGAAGTCCTGACCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCTTTCGTTTTTTTACATGTGTTTCCCAGAAGTCCTGACCTGAG  500

seq1  GATTTATATCTGTGATTTGTCTTATTCTTTAATAACATGATTATGCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATATCTGTGATTTGTCTTATTCTTTAATAACATGATTATGCTTTA  550

seq1  TCCCCCAGAGTCTGGCCTTTTGGACTAATGTCGAGCTGGACTAATTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGAGTCTGGCCTTTTGGACTAATGTCGAGCTGGACTAATTGACA  600

seq1  GCATTTGTCTCCTTATGTAGGACAAGTGGCATAGAGGGCCCCTTGAGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCTCCTTATGTAGGACAAGTGGCATAGAGGGCCCCTTGAGACG  650

seq1  CCCCATATGCTCTGGGCCCTCTTTCTGAGATACCTGTTGCTTCTTAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATGCTCTGGGCCCTCTTTCTGAGATACCTGTTGCTTCTTAAGGC  700

seq1  TGGAGGCAGGATGTGGGACTCCCCCAACAGGGACTGTTTCCTTG-TTTCC  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGAGGCAGGATGTGGGACTCCCCCAACAGGGACTGTTTCCTTGTTTTCC  750

seq1  CAGATGCTGGGCAGAACTCTCCTCTCCCCTTCAGGGCACAGGTATTTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTGGGCAGAACTCTCCTCTCCCCTTCAGGGCACAGGTATTTCTG  800

seq1  TCATGGTGTTCTTCCCACACCCTACAGT-AGTCCCAACCTCCACTTGCCA  848
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  TCATGGTGTTCTTCCCACACCCTACAGTAATTCCCAACCTCCACTTGCCA  850

seq1  TATTGTATGGCTTCTGAGCCCCTTCCCCAGTGCATAGATGCCCCTCCCCA  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTGTATGGCTTCTGAG-CCCTTCCCCAGTGCATAGATGCCCCTCCCCA  899

seq1  ACCTAGTGTATTCTCT-GGATCCCTAAGAGCCTTAGATCCTGAGCCACAG  947
      |||||||| | ||||| ||||||||||||  |||||||| |||| |||||
seq2  ACCTAGTGGA-TCTCTGGGATCCCTAAGAAGCTTAGATCTTGAG-CACAG  947

seq1  AGCTGAGAGACTTCTGAGCGCTAGTG-CCTCCCCACACCTAAGCATCCTT  996
      |||||||||||||||||||||||||| | || ||||||||||| || |||
seq2  AGCTGAGAGACTTCTGAGCGCTAGTGTCTTCTCCACACCTAAG-ATTCTT  996

seq1  CACATTAATTCACTTATTGGTCTTACCTAACAGCTATCTCGTGTGGTTGC  1046
       ||| |||||   ||||||||||||||||||| |||||||| |||| |||
seq2  TACA-TAATTACTTTATTGGTCTTACCTAACACCTATCTCG-GTGG-TGC  1043

seq1  ACTGTGGCGGTGCCCTCTGTTGCAGGGCTGAGACTGTG-CAACCTTGTGC  1095
       ||||||||| | ||||||||| |||  | |||| ||| |||||||||||
seq2  CCTGTGGCGG-GGCCTCTGTTGTAGGCTTAAGAC-GTGTCAACCTTGTGC  1091

seq1  CAAAAATTCAAAAAATCTGATTGGCCCAGCTGAAAAAAAAAAAAAAAAAA  1145
      |||||  ||  |||||| || |||  ||||||  ||||||||||||||||
seq2  CAAAA--TC--AAAATCGGAATGG-TCAGCTG--AAAAAAAAAAAAAAAA  1134

seq1  AACAGGGAATGTGTGTGGCTCATACCCAGGCCTGGATGACTATGCCGAAA  1195
      ||||||||  ||||| ||| ||||||  | |||| | |  | ||||||||
seq2  AACAGGGATGGTGTG-GGCGCATACCAGGCCCTGAAAGTATGTGCCGAAA  1183

seq1  C  1196
      |
seq2  C  1184

seq1: chr7_130205066_130206176
seq2: B6Ng01-060H17.g_68_1170 (reverse)

seq1  GTTGCACCAGGAGTTGCTTACAGTGCCTGCATTTCATATGAAAACACACT  50
      |||||||   |||| |||||||| ||||||| ||||||||||||||||| 
seq2  GTTGCAC--AGAGTGGCTTACAG-GCCTGCA-TTCATATGAAAACACAC-  45

seq1  TGGGCTGTGTCTGAGGTGGGGGATTGGTATTCGGTGGCCAATGACCAATC  100
      || |||||||||||||||| |||||||||||||||||||| |   |||||
seq2  TGAGCTGTGTCTGAGGTGGAGGATTGGTATTCGGTGGCCATT--ACAATC  93

seq1  TGTAATTCCTTCATTTCTCAGGTGTGGACACTGAGGCCCAGAGAGGTGAT  150
      | | |||||||||||| |||||||||||||| |||||||||||| |||||
seq2  T-TTATTCCTTCATTT-TCAGGTGTGGACAC-GAGGCCCAGAGAAGTGAT  140

seq1  GTGATTTGCCTAAAGTCATGCAACTAGTGGCAGAGCCCAGCCTAGAAG-C  199
      ||||||||||| |||||||||||||||| ||||||||||||||||||| |
seq2  GTGATTTGCCTTAAGTCATGCAACTAGTAGCAGAGCCCAGCCTAGAAGCC  190

seq1  CAGGTGTCCTGGATCTCAAGATACTCCACTGCCTGAGGAATGGAACAGGT  249
      ||| ||||||| ||||||||||||| |||||||||| |||||||||| ||
seq2  CAGATGTCCTGAATCTCAAGATACTTCACTGCCTGAAGAATGGAACAAGT  240

seq1  AATGTATCTCACAGTGTGGGGTGTGGATCAGTCCTTGCAGCCTGAGGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCTCACAGTGTGGGGTGTGGATCAGTCCTTGCAGCCTGAGGTGT  290

seq1  CTGATATGCACTGAGTCAACAGAGGAAGCAGCCACTCACAATCCTGATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGCACTGAGTCAACAGAGGAAGCAGCCACTCACAATCCTGATGT  340

seq1  GTTGAATAGGGTTGAAATCAAATATTTGAAATTCAGCCCCTAAGATCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATAGGGTTGAAATCAAATATTTGAAATTCAGCCCCTAAGATCCAA  390

seq1  AGACAGCAACTAATATCCATACCCCCATGGCAAACATCCCCTTCTGAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAACTAATATCCATACCCCCATGGCAAACATCCCCTTCTGAAGG  440

seq1  TGGGTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTTG-TTTTTTGG  498
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGGTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTTGTTTTTTTGG  490

seq1  TTTTTTGGTTTTTTTTTTTTTTTTTTTTTTCTGGCCAGACATGTCCATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTTTTTTTTTTTTTTTTTTTCTGGCCAGACATGTCCATCT  540

seq1  CCAAACAGCGTGGCCGTGACTCATCTGGCCACTCTGCTACCCAGGCTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGCGTGGCCGTGACTCATCTGGCCACTCTGCTACCCAGGCTCTC  590

seq1  ACCAATGCAATGCACAGTGTCATAAAAAGCAGTGGCTGCTTGCAGTGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCAATGCACAGTGTCATAAAAAGCAGTGGCTGCTTGCAGTGGAT  640

seq1  GCATGGGGAGGTCAGAGGGGGAGGGAATCCAAGAGACCAATTAGGAGGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGAGGTCAGAGGGGGAGGGAATCCAAGAGACCAATTAGGAGGCT  690

seq1  CCTCTGGCGATCCAGGAGGAAACTACAGACAAAGAGCTGCTGGAGGTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCGATCCAGGAGGAAACTACAGACAAAGAGCTGCTGGAGGTGTT  740

seq1  TGTAGAGGTCTGCTGGTTAATGGTAGCTAACATTGGTCACTAGGAATGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGTCTGCTGGTTAATGGTAGCTAACATTGGTCACTAGGAATGCT  790

seq1  GTACCGCAGACAGGAAGTAAAGCCCATCAAAATGGGAAAGGAGGAGGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGCAGACAGGAAGTAAAGCCCATCAAAATGGGAAAGGAGGAGGCCT  840

seq1  CTGGTTTCATATATTTCCACATATTTCTAACAAGGAGTTTCTTAAGCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCATATATTTCCACATATTTCTAACAAGGAGTTTCTTAAGCCAC  890

seq1  GTATTGGCAAACAAAATTCAGCTAGGTTATATAAGTCAGATATAGCCTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGCAAACAAAATTCAGCTAGGTTATATAAGTCAGATATAGCCTAA  940

seq1  GTGTTAGGTGTAAGCCCTGATACCACTCATTGATAATATGTATTCATATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGTGTAAGCCCTGATACCACTCATTGATAATATGTATTCATATC  990

seq1  TCTTAAGAGGCAGAATTTCCATTTTTTTCTATCCATTCAGTGATTATTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGAGGCAGAATTTCCATTTTTTTCTATCCATTCAGTGATTATTAG  1040

seq1  TTGAGAACCCACTGTGTACCAGGCAGCTGGAATACAAGTGAACTATACAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACCCACTGTGTACCAGGCAGCTGGAATACAAGTGAACTATACAA  1090

seq1  ACATCTGGAATTC  1111
      |||||||||||||
seq2  ACATCTGGAATTC  1103