BAC Information

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BAC

Clone NameB6Ng01-061A11
Chromosome7 (Build37)13 (Build37)
Map Location 128,873,831 - 128,874,93310,764,581 - 10,764,777
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31
Downstream geneScnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061A11.bB6Ng01-061A11.g
ACCDH881829DH881830
length1,094534
definitionDH881829|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A11, 5' end.DH881830|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,873,831 - 128,874,933)(10,764,581 - 10,764,777)
sequence
gaattcatgttcaaattgtgaatgccattttgtggtgaccagcaactgtt
tagagaccctcagcataaaagtccgaagaagctggaagctgcctggttgc
tgtccacggtgctgattgcctaaagcctgcctcctgcgggtgaagcagca
tccacatgatgaatctgaaggccccagtccagcagagctggtgagatggc
tcagcatgtgagggcacctacggccaaccctgataacctgggtttgttcc
ctggggtccacatggcagaagaagagaacccattctgaaaattgtaatat
gacctccacacatgttccagatagcacttaagtgtccacatacacaaaat
aaataagggactagagagatatcttagtggctaagagaagttgttgctct
tccagaggacctgggtttcagtcccaagcactcatatggtggcttacaac
tgtctgtaactttagttccagaggatctgatactctcctcatctgacctc
cgtagtacagctatacatgtggttacagacatagttgcaggcaatacttt
catgcccataaaatagaataaataagaacatactttaaaaatcaaagacc
ccgatcctgactccccagcaatcagtttctaaaagagacttcatcaaaga
acaagattgaacagataaacttgctctcatccttcggacacaagacgatg
ttcacaagaaccaaaggccattcattgttctagagcaaggaagaagccag
cttgggagcaagcttccttatccaacagagtttccacactcatgtcaaaa
cccttgtctaagcaaccttacacacctttgcgttgcttctgattctccag
cagtgttggatctcctcatagttcctgtaatctcttgagaccctgacact
tacctcaaacctctatatctattgtagaaagagtttcagtggtattgatt
ttaggaagtgactcatgagatcagagagccagggcatgaaggacttctgt
gagactgttgatattggtgagtaccaaggaaagtgggctcagcaactaaa
ggcatgtgctaccaacctgaccatctgagttcagtcccaggatc
aggtaatcaaggcaagcatgttggtgactgagctgtttctccagccccca
ccattatagcagaacccaccaatctcccctttgttgatatttttagaaat
gtttccctcaacttaagatgaaatatatttccctatacttttcagaagct
gttttttttttttttatttttgttgttgttatatttactcagtctgggac
ttatattacaaatggtactgttttcttttgaataaccagcttattcaata
taacatattaaatgattcctactttcttctggttcttaatgccagcttta
taagaaatatgatgagttctcagtaggtgtgtgtctctttctgagatatc
tattcttttgttttgttttgtttcgagacagggtttctctgtgtagccct
ggctgtcctggaactcactctttagaccaggctggccacgacctcagaaa
tccgcctgcctctgcctcccaagtgctgggattaaaggccactactgccc
ggtgagatatctgttctttacatgagcatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_128873831_128874933
seq2: B6Ng01-061A11.b_49_1142

seq1  GAATTCATGTTCAAATTGTGAATGCCATTTTGTGGTGACCAGCAACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTCAAATTGTGAATGCCATTTTGTGGTGACCAGCAACTGTT  50

seq1  TAGAGACCCTCAGCATAAAAGTCCGAAGAAGCTGGAAGCTGCCTGGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCCTCAGCATAAAAGTCCGAAGAAGCTGGAAGCTGCCTGGTTGC  100

seq1  TGTCCACGGTGCTGATTGCCTAAAGCCTGCCTCCTGCGGGTGAAGCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACGGTGCTGATTGCCTAAAGCCTGCCTCCTGCGGGTGAAGCAGCA  150

seq1  TCCACATGATGAATCTGAAGGCCCCAGTCCAGCAGAGCTGGTGAGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGATGAATCTGAAGGCCCCAGTCCAGCAGAGCTGGTGAGATGGC  200

seq1  TCAGCATGTGAGGGCACCTACGGCCAACCCTGATAACCTGGGTTTGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTGAGGGCACCTACGGCCAACCCTGATAACCTGGGTTTGTTCC  250

seq1  CTGGGGTCCACATGGCAGAAGAAGAGAACCCATTCTGAAAATTGTAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCCACATGGCAGAAGAAGAGAACCCATTCTGAAAATTGTAATAT  300

seq1  GACCTCCACACATGTTCCAGATAGCACTTAAGTGTCCACATACACAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCACACATGTTCCAGATAGCACTTAAGTGTCCACATACACAAAAT  350

seq1  AAATAAGGGACTAGAGAGATATCTTAGTGGCTAAGAGAAGTTGTTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGGACTAGAGAGATATCTTAGTGGCTAAGAGAAGTTGTTGCTCT  400

seq1  TCCAGAGGACCTGGGTTTCAGTCCCAAGCACTCATATGGTGGCTTACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGACCTGGGTTTCAGTCCCAAGCACTCATATGGTGGCTTACAAC  450

seq1  TGTCTGTAACTTTAGTTCCAGAGGATCTGATACTCTCCTCATCTGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAACTTTAGTTCCAGAGGATCTGATACTCTCCTCATCTGACCTC  500

seq1  CGTAGTACAGCTATACATGTGGTTACAGACATAGTTGCAGGCAATACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTACAGCTATACATGTGGTTACAGACATAGTTGCAGGCAATACTTT  550

seq1  CATGCCCATAAAATAGAATAAATAAGAACATACTTTAAAAATCAAAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCATAAAATAGAATAAATAAGAACATACTTTAAAAATCAAAGACC  600

seq1  CCGATCCTGACTCCCCAGCAATCAGTTTCTAAAAGAGACTTCATCAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCCTGACTCCCCAGCAATCAGTTTCTAAAAGAGACTTCATCAAAGA  650

seq1  ACAAGATTGAACAGATAAACTTGCTCTCATCCTTCGGACACAAGACGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTGAACAGATAAACTTGCTCTCATCCTTCGGACACAAGACGATG  700

seq1  TTCACAAGAACCAAAGGCCATTCATTGTTCTAGAGCAAGGAAGAAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGAACCAAAGGCCATTCATTGTTCTAGAGCAAGGAAGAAGCCAG  750

seq1  CTTGGGAGCAAGCTTCCTTATCCAACAGAGTTTCCACACTCATGTCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGCAAGCTTCCTTATCCAACAGAGTTTCCACACTCATGTCAAAA  800

seq1  CCCTTGTCTAAGCAACCTTACACACCTTTGCGTTGCTTCTGATTCTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCTAAGCAACCTTACACACCTTTGCGTTGCTTCTGATTCTCCAG  850

seq1  CAGTGTTGGATCTCCTCATAGTTCCTGTAATCTCTTGAGACCCTGACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGGATCTCCTCATAGTTCCTGTAATCTCTTGAGACCCTGACACT  900

seq1  TACCTCAAACCTCTATATCTATTGTAGAAAAGAGTTTCAGGTGGTATTGA  950
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TACCTCAAACCTCTATATCTATTGTAG-AAAGAGTTTCA-GTGGTATTGA  948

seq1  TTTTAGGGAAGGTGACCCATGAGATCAGAGAAGCCAGGGGCATGAAGGAC  1000
      |||||||  | ||||| ||||||||||||| ||||| |||||||||||||
seq2  TTTTAGG--AAGTGACTCATGAGATCAGAG-AGCCA-GGGCATGAAGGAC  994

seq1  CTCTGTGAGACTGTTGATATTGGTGAGTACCAAAGGAAAGTGGGCTCAGC  1050
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTGTGAGACTGTTGATATTGGTGAGTACC-AAGGAAAGTGGGCTCAGC  1043

seq1  AACTAAGGGCATGTGCTACCAAACCTGACCATCTGAGTTCAGTTCCCAGG  1100
      |||||| ||||||||||||| ||||||||||||||||||||| |||||||
seq2  AACTAAAGGCATGTGCTACC-AACCTGACCATCTGAGTTCAG-TCCCAGG  1091

seq1  ATC  1103
      |||
seq2  ATC  1094

seq1: chr13_10764581_10764777
seq2: B6Ng01-061A11.g_219_563 (reverse)

seq1  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGGTC  50

seq1  AAGGCCAGCCTGGTCTACAAAGTGATTTCCAGGACAGCCAGGGCTATACA  100
        ||||||||||||||| | ||||| |||||||||||||||||||| |||
seq2  GTGGCCAGCCTGGTCTAAAGAGTGAGTTCCAGGACAGCCAGGGCTACACA  100

seq1  GAAAAACCCTGTCTC--AAAAAAACAAAACAAAACAAAACA--------A  140
      || ||||||||||||  || |||||||||||||| || | |        |
seq2  GAGAAACCCTGTCTCGAAACAAAACAAAACAAAAGAATAGATATCTCAGA  150

seq1  AACAAAAAAAAACCAA---ACAAAACAACA--------ACAA------CA  173
      || | | | | ||| |   | ||  || ||        | ||      ||
seq2  AAGAGACACACACCTACTGAGAACTCATCATATTTCTTATAAAGCTGGCA  200

seq1  ACAAAAACCCAAAAGAACAGCTTC--------------------------  197
        || || ||| ||||| ||  |                           
seq2  TTAAGAA-CCAGAAGAA-AG--TAGGAATCATTTAATATGTTATATTGAA  246

seq1  --------------------------------------------------  197
                                                        
seq2  TAAGCTGGTTATTCAAAAGAAAACAGTACCATTTGTAATATAAGTCCCAG  296

seq1  -------------------------------------------------  197
                                                       
seq2  ACTGAGTAAATATAACAACAACAAAAATAAAAAAAAAAAAAACAGCTTC  345