BAC Information

Click to search

BAC

Clone NameB6Ng01-061C19
Chromosome7 (Build37)
Map Location 12,422,057 - 12,422,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
Downstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061C19.bB6Ng01-061C19.g
ACCDH881925DH881926
length1,2781,143
definitionDH881925|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C19, 5' end.DH881926|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctacagctgttaaacaacttcagcaaagtggccagatataaaat
taactcaaataaatcaatggccttcctccacttaaatgataaacaggttg
aaaaagaaattaggaaaatgacacccttcacaatattctaaaacaatata
aaatatctttatgtgactctaaccaaacaagggaaagatctgtatgacaa
taacttcaagactctgaagaaagaaatcaaagacctcagaagatggaact
gtctcccatgctcctggattggcaggattaatacagttaaaatggccacc
ttgccaaacactatctactgcctcaatgcaatccccatcaaaaatccaat
tcagttctttttttttttattagatattttcgttatttacatttcaaatg
ttatcccctttcctggtttcccctccaaaaactccctctcccctcccccc
accctttccccctgatcatcaacccacctactcccaattcctggccctgg
cattcccctacactggggcatagagccttcacaggaccaagggcctctct
aaccactgatgaccaacaaggtcatcctctgttatatatgcagctggagc
catgagttcctccctgtgtactctttggttggtggtttagtccttgggaa
ctctggggttactgattggttcatattcttgttcctcctatagggctgca
aatcccttcagctcgttgggtcttttctctagctcctccattggggaccc
tgtgctcagtccaatggttgactgagagcaaccatctctctatttgtcag
gcactgatagaaaatctcaggggacagctatatcaggcctctgtcagcaa
gcacttgttggcatccacaatagtgtctgggcttggtgactgtatatggg
atggatacccagatgtggcagtctctgggtggcccttcattcagtctctg
ctctacactttgtttctgtaactccttccatggatgtttgttccctattc
taagagggacaaagtatccacatttggtcttccttcttcttgagtttcat
gtgttttccaaattgtatctgggtattttaagtttcttgtctaatccact
tatcatgaatgcaatcagtggagttcttgggattggatcggatatacttc
aaatcatcattggctagaaattcagattcaatgttgttagcgaagtagat
ccatttgattaaccattccggtacttctgtggagacatacgggttttccg
ctcactatcacataaaagaggctgtctg
gaattcatattcacatggagaaaacaggattgcatttatataccctaact
atgcacaaaaattaatgctaaattattcaaacactgaatgctaaaactct
tacaggaaagtattagtgattcaagatacaggtagaggcaacaggactac
ctgatgtcaagaacactaacaatctaccaaaaaattgagtggtgactgtg
tgaaactaaaagatttttggcctttaagaataagtgactgcggaatgaaa
atattacctaccaagtgggagataaacattgatttctgcaagtcaattag
aagactaatacctaaaatttatagagtaaaataatgattaaactcttcac
aaactttcagtcaacatacatggtaataaaataggcacagattcctttaa
atatttaaaaaatgtacagtaaatgctttttaaaattgttcaacgttaag
agctttctaggaaatgaaataataaatactttgagacattgcacatctta
aagtgattatcaagataagataaacactaacaataaaaatgctgaccacg
atggggatataatcattattatatactggtatgaggaaaaattactacat
ttattatagaaataaatatgaagatatcttaagaaattaaaaatagaatt
atcatataacatagttatataatttctgtgctataccgaaagaactcaat
gtcctaccataaagatgcttccacatccatataagctgctgttttattct
taacagcaaaatgatgatgcccatctttgatgttcatcagcacataaagg
caataaggtgtatctgtacagtggaattgtgttcatctataaatagaaat
gaaatcgtgaaaaatattgagatactagatggacttgcaaacaattcaca
aaggttagagatacaggaaatctaagtcacatgccatttgtcaaacaggg
acatttgcatatgaatgtaagtgagagaagtgcttgactataacgcagaa
gaaatcaaagaatgcaagaatgacatgttgagaaatccaggggagagtaa
gagagcaatgtggcattaaatgaaaaggattataagtatgtagagaggca
ggaatttgaggactggaaaaaaatgtaagaaagaataaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12422057_12422861
seq2: B6Ng01-061C19.g_431_1209 (reverse)

seq1  ATTTTTTATTCTTTTCTTTAACATTTTTTTCTCCAGTCCTCTCAATATCT  50
      ||||||||||| ||||||  |||||||||  ||||||||||   | || |
seq2  ATTTTTTATTC-TTTCTT--ACATTTTTT--TCCAGTCCTC---AAAT-T  41

seq1  CCTTGCACTTCTATACATACTTTATAATCTTTTTCATTTTAATGCCACAT  100
      |||    | ||| ||||||| |||||||| |||||| |||||||||||| 
seq2  CCT---GCCTCTCTACATAC-TTATAATCCTTTTCA-TTTAATGCCACA-  85

seq1  TTGCTCTCTTACTCTCCCCTGGATTTCTCAACATGTCATTTCTTTGCATC  150
      ||||||||||||||||||||||||||||||||||||||||   |||||| 
seq2  TTGCTCTCTTACTCTCCCCTGGATTTCTCAACATGTCATT--CTTGCATT  133

seq1  TTTTGATTTTCTTTCTGCGTTTATAGTCCAAGCCACTTTCTCTCCACTTA  200
       ||||||||   ||||||| ||||||| |||| ||| |||||| ||||||
seq2  CTTTGATTT--CTTCTGCG-TTATAGT-CAAG-CAC-TTCTCT-CACTTA  176

seq1  CATTCATATGCAAATGTCCCTGTTTGACAAATGGCATGTGACCTTAGATT  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATTCATATGCAAATGTCCCTGTTTGACAAATGGCATGTGA-CTTAGATT  225

seq1  TCCTGTATCTCTAACCTTTGTGAATTGTTTGCAAGTCCATCTAGTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATCTCTAACCTTTGTGAATTGTTTGCAAGTCCATCTAGTATCTC  275

seq1  AATATTTTTTCACGATTTCATTTCTATTTATAGATGAACACAATTCCACT  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATA-TTTTTCACGATTTCATTTCTATTTATAGATGAACACAATTCCACT  324

seq1  GTACAGATACACCTTATTGCCTTTATGTGCTGATGAACATCAAAGATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATACACCTTATTGCCTTTATGTGCTGATGAACATCAAAGATGGG  374

seq1  CATCATCATTTTGCTGTTAAGAATAAAACAGCAGCTTATATGGATGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATTTTGCTGTTAAGAATAAAACAGCAGCTTATATGGATGTGGA  424

seq1  AGCATCTTTATGGTAGGACATTGAGTTCTTTCGGTATAGCACAGAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTATGGTAGGACATTGAGTTCTTTCGGTATAGCACAGAAATTA  474

seq1  TATAACTATGTTATATGATAATTCTATTTTTAATTTCTTAAGATATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTATGTTATATGATAATTCTATTTTTAATTTCTTAAGATATCTTC  524

seq1  ATATTTATTTCTATAATAAATGTAGTAATTTTTCCTCATACCAGTATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTCTATAATAAATGTAGTAATTTTTCCTCATACCAGTATATA  574

seq1  ATAATGATTATATCCCCATCGTGGTCAGCATTTTTATTGTTAGTGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATTATATCCCCATCGTGGTCAGCATTTTTATTGTTAGTGTTTAT  624

seq1  CTTATCTTGATAATCACTTTAAGATGTGCAATGTCTCAAAGTATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTGATAATCACTTTAAGATGTGCAATGTCTCAAAGTATTTATTA  674

seq1  TTTCATTTCCTAGAAAGCTCTTAACGTTGAACAATTTTAAAAAGCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCCTAGAAAGCTCTTAACGTTGAACAATTTTAAAAAGCATTTA  724

seq1  CTGTACATTTTTTAAATATTTAAAGGAATCTGTGCCTATTTTATTACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTTTTTAAATATTTAAAGGAATCTGTGCCTATTTTATTACCAT  774

seq1  GTATG  805
      |||||
seq2  GTATG  779