BAC Information

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BAC

Clone NameB6Ng01-061I14
Chromosome7 (Build37)
Map Location 7,385,877 - 7,386,405
singlet/doubletsinglet
Overlap geneVmn2r-ps36
Upstream geneOlfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
Downstream geneV2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061I14.bB6Ng01-061I14.g
ACCDH882188DH882189
length881855
definitionDH882188|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I14, 5' end.DH882189|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagttctgtaccccattttaaatagagttatttggttt
agtggagtccttcttagaagagagaacaaaatagtcatgggaggaaatat
aaagacaaagtgtagaacagaaactgaagaaaaggccatccagagacttc
cccacctggtgatctgtcctataaagagttaacaaacccagacactatta
ttgattccaacaggtgcttgctaaaaggcacctgatatagctgtaccctg
agaggctctgccagaccctgacaaatacagaggcagatgtttatagccag
ccattggactgagcatgaggccacccagagattgccccgcctgaggattc
atcccctatgcagacaccaaactcaagacactattaaggatgcccacaag
tgcttgctgacaggagcctgatatatctgtctcctgagaggctctgccag
aacagagcctgagcaagacagatgcaaatgcttgctgccaaccattggac
tgatccagggtccccaatggaagaattagagaaaggactgaaggaactga
agggatttgcaaccccataggaagaacaacaatatcaaccaaccagaccc
ccagagttcccagggattaaaccaccatccaaagagtacacattgagtgt
gacccatggctccagccccatatatagcagaggatggcctgtcaggcatt
aatgggaggagaggcccttggtcccatgaaggctcaatgccccaatgtag
tggaatgccagggtgtggagttgggagtgtgtggggaaaaacaccctcat
aaaagagggaaaggggctatgaaaggatgtttccttatggtaaaatcaaa
aagaaaatatatttaacgtaaatataaataa
gaattcaattgctatattgaataggcagggagaaagtgggcagtttgtct
agtcccttattttagtgggattgcttcaagtttctctccattcagtttga
tgttggttactggtttgctgtatattgcttttattatggttaggtatggg
ccttgaatccctgatctttccaagacttttatcatgtagggctgttggat
ttcgtcaaatgctttctcggttctctttctttgttgtttttttttaatgt
ggtttagagtaattgtggctttgtagaaagaattgtgtagagtactttct
gtttttattttgtgaaataatttgaggagaattaaaattaggtcttctta
gtaggtttgatagaactctgcactaaacccatatagtcctggcctttttt
tttttttttttttttttttggttgggggactattaatgaatgcttctatt
tctttacgggatatgggactttttagattattgatctgatcctgatttaa
ctttggtacctgatatctgtttatgaagttgtccatttcatccaggtttc
acaataaggttgagtaaagccttttgtagtaggattgatgatattttgga
tttcctcaggttctattgttttgtttcccttttcacttctgattttctta
attaggatcctgtccctgtgccatcttgttagtctggctaaaggtttatc
ttcttgtgggttttcttaaagaaccagctcatgggttggttgattcttga
atagttctttttgtttccatttggttgatttcagccctgagtttgattat
ttcctgccatctactctcttgggtgaatttgcttctttttagtctagagc
tttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7385877_7386405
seq2: B6Ng01-061I14.g_403_922 (reverse)

seq1  TAAAAGCTCTAGAAAAAAAGCAAGCAAATTCACCCAAGAGGAGTAGACGG  50
      |||||||||||||  ||||  |||||||||||||||||| ||||||| ||
seq2  TAAAAGCTCTAGACTAAAAAGAAGCAAATTCACCCAAGA-GAGTAGATGG  49

seq1  CAGGAAATAATCAAACTCAGAGGTGAAATCAACCAAGTGGAAACAAGAAG  100
      |||||||||||||||||||| | ||||||||||||| ||||||||| |||
seq2  CAGGAAATAATCAAACTCAGGGCTGAAATCAACCAAATGGAAACAAAAAG  99

seq1  AACTATTCAACGAATCAACAAA---ATGAGTACCTGGTTCTTTGAGAAAA  147
      |||||||||| |||||||| ||   |||||   |||||||||| ||||||
seq2  AACTATTCAA-GAATCAACCAACCCATGAG---CTGGTTCTTTAAGAAAA  145

seq1  TCCACAAGATAGATAAACTCTTATCCAGACTCACTAGAGGGCACAGGGAC  197
       |||||||| ||||||||  ||| ||||||| || ||| |||||||||||
seq2  CCCACAAGA-AGATAAACCTTTAGCCAGACTAACAAGATGGCACAGGGAC  194

seq1  AGCATCCTAATTAACAAAATCAGAAGTGAAAAGAGAGACATAACAACAGA  247
      || ||||||||||| |||||||||||||||||| || ||| ||||| |||
seq2  AGGATCCTAATTAAGAAAATCAGAAGTGAAAAGGGAAACAAAACAATAGA  244

seq1  TCCTGAAGAAATAAAAAACACCATCAGATTCTTCTACAAAATGTTATACT  297
       ||||| |||||  |||| | ||||| || || |||||||| | | ||||
seq2  ACCTGAGGAAATCCAAAATATCATCA-ATCCTACTACAAAAGGCTTTACT  293

seq1  CAACAAAACTGGAAAACGTGGGCGGAATGGACACATTTATAGACAGTTAC  347
      ||||   | ||  |||| |||  | ||||||||  || ||| |||| || 
seq2  CAACCTTATTGTGAAACCTGGATGAAATGGACAACTTCATAAACAGATAT  343

seq1  CATGTACCAAAGTTAAACCAGGATCAGGTCAATGATCTAAACAGTCCCAT  397
      || |||||||||||||| ||||||||| ||||| ||||||| ||||||||
seq2  CAGGTACCAAAGTTAAATCAGGATCAGATCAATAATCTAAAAAGTCCCAT  393

seq1  ATCCCGCAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAAAA  447
      |||||| ||||||||||||||| |||||||||||| |||||||    |||
seq2  ATCCCGTAAAGAAATAGAAGCATTCATTAATAGTCCCCCAACC----AAA  439

seq1  AAAAAAAAAAAAAAAAAAAAAAGCCCAGGAAGAAGAAGGGTTTAGTGCAG  497
      ||||||||||||||||||||||| ||||| |  | | |||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGGCCAGG-ACTATATGGGTTTAGTGCAG  488

seq1  AGTTCTATGAGATCTTCAAAGAAGACCTAATT  529
      |||||||| | | || | ||||||||||||||
seq2  AGTTCTATCAAACCTACTAAGAAGACCTAATT  520