BAC Information

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BAC

Clone NameB6Ng01-061K06
Chromosome7 (Build37)3 (Build37)
Map Location 19,455,826 - 19,456,47335,745,153 - 35,746,302
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2
Downstream genePglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061K06.bB6Ng01-061K06.g
ACCDH882258DH882259
length1,0461,141
definitionDH882258|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K06, 5' end.DH882259|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,455,826 - 19,456,473)(35,745,153 - 35,746,302)
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcgat
tgtacgagggatagttatatcatgttaggcgtattacaaccttgttattg
tttcatgtgaacatgagatattatttgtgtaagttgacaggggtggattg
tagtggctattctggtgtcacttgacatattggatgaacttcaatcggaa
tggaagctcaccatgaccttatctggaggcttggagatctatctgg
gaattctgtttctgacttttgaagcatccctgaacagtacaaaccctgac
tgtcaactgaggaaggtggtggcagctgtctgatggggcaacctggactc
atctactgagttgagggtagagtgagggtaaggtaagaagtcagagcagc
atcgtgatgcacggggacactgggggctcagcctgtcgctgggcatgaag
gaagtgcttctgggctgctagatagagttaagaaaagcttgaaaacaatc
taacaaactaactctgtaacagttaaatctaataagtttttttaatcagg
aagtattttctatgtattatatttttaataattcagttttatcacaagca
taacagtattattacttgaaggacaggatatttaaaaaagaaaacataaa
actgatgttttagcaatccattcaggaagtattgagctattccaagtact
tgagaggaagggctttgtctggaacttctaagtttaatgtcccatattct
gcttatagctgctgttcagcttgctgagaaggatcttctgagagtcacat
ccacaggtcacctgggtgtttgtgtccatctatgtgctgaagaacgctgg
aatctgtacctggattcaggtagatgtcttacatcacttaaacctatggc
taaatgttaaatcctaggcacccaagagagcaacatgtcaaaactgttat
ataatatcctcttttagatttagtgagtgaaataaaagtagctcccccct
gcaaaaaatgaaaagcaaaagaaatagtaacaacaaagattcaggtgcat
tgtaaatggtgactactgtaagctatctctagaaatcccgctcccgatcc
agcaaaccatccataaagctttttctaggcacatcacctatctcagcatt
caggctcagctcggcagaagctagagtctacaggagttaagtggcacagg
gtgggacagagtttcatttccttcaaagtacagagggaggctttttattt
tagtatatatgaaatctacaaaagtaatggtggtgagatgccattttctg
atcgtgactagcttgactagagcagacttttggaattagctctactctct
cagtcatccttctccaagttcttaggcaattccccaacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19455826_19456473
seq2: B6Ng01-061K06.b_457_1088

seq1  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50

seq1  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100

seq1  TGGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTC  150

seq1  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200

seq1  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250

seq1  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300

seq1  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350

seq1  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400

seq1  GAATGCCCATTGTAAATTTACTAATGCGTTTGCGATTGTACGAGGGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCATTGTAAATTTACTAATGCGTTTGCGATTGTACGAGGGATAG  450

seq1  TTATATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTGAACA  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATATCATGTTAGGCGTA-TTACAACCTTGTTATTGTTTCATGTGAACA  499

seq1  TGAGATATTATTTGTGTCAAGTTGACAAGGGGTGGATTGTAGTGGCTATT  550
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TGAGATATTATTTGTGT-AAGTTGAC-AGGGGTGGATTGTAGTGGCTATT  547

seq1  CCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGG  600
       |||| |||| ||||||| |||||  | ||||||| |||| ||||| |||
seq2  -CTGG-TGTC-ACTTGAC-ATATT--GGATGAACTTCAAT-CGGAA-TGG  589

seq1  AAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGG  648
      || |||||||| ||| |||||||||||||||||||||||  |||||||
seq2  AA-GCTCACCA-TGA-CCTTATCTGGAGGCTTGGAGATC--TATCTGG  632

seq1: chr3_35745153_35746302
seq2: B6Ng01-061K06.g_68_1208 (reverse)

seq1  GGGGTTGGGGATATTGCCTAGGAACTTGTGAAGAGGGTGTGCTG-GAGAG  49
      ||||||||||| |||||||| ||||||| ||  ||| ||  ||| |||||
seq2  GGGGTTGGGGA-ATTGCCTAAGAACTTG-GAGAAGGATG-ACTGAGAGAG  47

seq1  TGAGGCTAATTATCAAAATGTCTGCTCTAGTCAAAGCTAGTCACGGTACA  99
      |   ||||||  || ||| ||||||||||||| |||||||||||| | ||
seq2  TAGAGCTAAT--TCCAAAAGTCTGCTCTAGTC-AAGCTAGTCACGAT-CA  93

seq1  GAAAATGGCATCTCA-CACCATTACTTTTTGTGGTTTTCATATATACTAA  148
      ||||||||||||||| ||||||||| |||||| | |||||||||||||||
seq2  GAAAATGGCATCTCACCACCATTAC-TTTTGTAGATTTCATATATACTAA  142

seq1  AGAATAAAAAGCTTCCCTCTTGTTACTTTGAATGAAATGAAACTCTGTTC  198
        |||||||||| |||||||   ||||||||| |||||||||||||| ||
seq2  --AATAAAAAGCCTCCCTCT--GTACTTTGAAGGAAATGAAACTCTG-TC  187

seq1  CCACCCTGTTGCACTTGACTCCTGT-GGCTCTAGCTTCTGCCTGAGCTGA  247
      |||||||||  ||||| |||||||| | |||||||||||||| |||||||
seq2  CCACCCTGTGCCACTTAACTCCTGTAGACTCTAGCTTCTGCC-GAGCTGA  236

seq1  GCCTGAATGCTGAGATAGGTGATGTGCCTAG-AAAAGCTTTATGGATGGT  296
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCTGAATGCTGAGATAGGTGATGTGCCTAGAAAAAGCTTTATGGATGGT  286

seq1  TTGCTGGATCGGGAGCGGGATTTCTAGAGATAGCTTACAGTAGTCACCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGATCGGGAGCGGGATTTCTAGAGATAGCTTACAGTAGTCACCAT  336

seq1  TTACAATGCACCTGAATCTTTGTTGTTACTATTTCTTTTGCTTTTCATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGCACCTGAATCTTTGTTGTTACTATTTCTTTTGCTTTTCATTT  386

seq1  TTTGCAGGGGGG-GCTACTTTTATTTCACTCACTAAATCTAAAAGAGGAT  445
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGGGGGAGCTACTTTTATTTCACTCACTAAATCTAAAAGAGGAT  436

seq1  ATTATATAACAGTTTTGACATGTTGCTCTCTTGGGTGCCTAGGATTTAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAACAGTTTTGACATGTTGCTCTCTTGGGTGCCTAGGATTTAAC  486

seq1  ATTTAGCCATAGGTTTAAGTGATGTAAGACATCTACCTGAATCCAGGTAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCATAGGTTTAAGTGATGTAAGACATCTACCTGAATCCAGGTAC  536

seq1  AGATTCCAGCGTTCTTCAGCACATAGATGGACACAAACACCCAGGTGACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGCGTTCTTCAGCACATAGATGGACACAAACACCCAGGTGACC  586

seq1  TGTGGATGTGACTCTCAGAAGATCCTTCTCAGCAAGCTGAACAGCAGCTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGTGACTCTCAGAAGATCCTTCTCAGCAAGCTGAACAGCAGCTA  636

seq1  TAAGCAGAATATGGGACATTAAACTTAGAAGTTCCAGACAAAGCCCTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAATATGGGACATTAAACTTAGAAGTTCCAGACAAAGCCCTTCC  686

seq1  TCTCAAGTACTTGGAATAGCTCAATACTTCCTGAATGGATTGCTAAAACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTACTTGGAATAGCTCAATACTTCCTGAATGGATTGCTAAAACA  736

seq1  TCAGTTTTATGTTTTCTTTTTTAAATATCCTGTCCTTCAAGTAATAATAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTATGTTTTCTTTTTTAAATATCCTGTCCTTCAAGTAATAATAC  786

seq1  TGTTATGCTTGTGATAAAACTGAATTATTAAAAATATAATACATAGAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGCTTGTGATAAAACTGAATTATTAAAAATATAATACATAGAAAA  836

seq1  TACTTCCTGATTAAAAAAACTTATTAGATTTAACTGTTACAGAGTTAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTGATTAAAAAAACTTATTAGATTTAACTGTTACAGAGTTAGTT  886

seq1  TGTTAGATTGTTTTCAAGCTTTTCTTAACTCTATCTAGCAGCCCAGAAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATTGTTTTCAAGCTTTTCTTAACTCTATCTAGCAGCCCAGAAGC  936

seq1  ACTTCCTTCATGCCCAGCGACAGGCTGAGCCCCCAGTGTCCCCGTGCATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTCATGCCCAGCGACAGGCTGAGCCCCCAGTGTCCCCGTGCATC  986

seq1  ACGATGCTGCTCTGACTTCTTACCTTACCCTCACTCTACCCTCAACTCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCTGCTCTGACTTCTTACCTTACCCTCACTCTACCCTCAACTCAG  1036

seq1  TAGATGAGTCCAGGTTGCCCCATCAGACAGCTGCCACCACCTTCCTCAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGTCCAGGTTGCCCCATCAGACAGCTGCCACCACCTTCCTCAGT  1086

seq1  TGACAGTCAGGGTTTGTACTGTTCAGGGATGCTTCAAAAGTCAGAAACAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCAGGGTTTGTACTGTTCAGGGATGCTTCAAAAGTCAGAAACAG  1136

seq1  AATTC  1150
      |||||
seq2  AATTC  1141