BAC Information

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BAC

Clone NameB6Ng01-063E03
Chromosome7 (Build37)
Map Location 123,515,592 - 123,652,812
singlet/doubletdoublet
Overlap genePik3c2a, LOC100042798, Nucb2
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13
Downstream geneLOC100043320, EG668484, LOC668485, LOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063E03.bB6Ng01-063E03.g
ACCDH883407DH883408
length1,154942
definitionDH883407|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E03, 5' end.DH883408|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,515,592 - 123,516,770)(123,652,021 - 123,652,812)
sequence
gaattccaaatcttcattacatatttcatctataaattgttttgtatttc
ccaaaaaataaacaatttcagggccgaggagacggttcagttggtaaatg
ctttctctacaagcatgatccgagcctgatctccagagctcatattaaga
agccaaggatgccaggtatatttgcaatctcagcgatgagggaagtggac
atagtggtgggttcctggagctcattggctagtcagtctgagaccctgtg
cctcagatataaggtaatgaatggcaatcatggttgtacttgaaactcca
catgcacatatgaggttactatccccaggaaagatctttagaactcttag
atcaagggctcataacactaaggacttgttagtgagttagaactgtttaa
tattgttctatctctgaaaatggagaaaggtgagaattataaaaaataga
ttttagaatcaagaactgatacagccattgcattgtgtcataatatactt
tacagaaatgacagtgtttggctaccgcttttctcctggatcagtgagtg
acaagccatcctttgcatattcaccagctaactctgagactacagcagag
agactactttctctagctcaaagcttatgcctgtcactgcttccaacctg
gcctccagcctgtttttgatgtacagagtatcagagaactcaccatcaca
attcagttaacactcaccgtttaaaatcaaatagagttaaagaaactttg
cccagagcttctggcccctttctctgtttattagaatcaggggaacttcc
actgctctgatttaaaactccaaacagagtaagatgaagaactgattcta
atggcaactgcgatatctggataggaaaaatgattctgtggggcagagaa
aaattttgttggtgttaagaaaaaaaaaagattaaagtaagattagtatc
acttatgaagacaaatttaagggtttatttcacttataaaacaatcttta
gttctgagtactttagctaagtagcaagtatggctaacttgtaagttaca
tcttaaatttcattatcagtataaacttcaaatgaaaaattctttcctgt
aaaatgtctagactaagttaggcagttgatattaggcaaataatagacct
tact
gaattctagcactagaggcagaggcaggaggatctctggtgagttcaagg
ccagcctggtttacataatgagttccaagatagccggggctatgaagagg
atcaggtctcgaaaatcttttaaaaaaaaaaaaaaagagtatccaatttt
tatgacctctcaaagtactgataaaatagacaaaggacagaacaaacaga
tcttgtgtacaatggctaagctgttctgccctggaaagaactcaagataa
gagcataaggctttctcagcaaacagataaactttaagatatacagttag
gggtttgaatgagaatggctcccttaggttcaaacatttaaatgcttatg
gaatagcactatttaaaaggaccaggaggtatggccttacaggaagaagt
gtgtcactaggggtaggctttgagttttcaaaagcccaagccaggcccag
tggttctctcttgctgctgcatgtggatccagatgtagaactctcagttc
cttttctagcatctgcctgcctgataccatgctccccaccagaatactgg
actaaacctctggaactgtaagcaaggcccagttaaatgttttcctttat
aagagttgccacggtcatggtgtctcttcatagcaacagaccattggctt
agacataggtaacgtcttcttttaaaaaaaaaagtatttgtttttatttt
atgtgtacatgtgggtgcctgcatgtaagtacccatgtgcaacatttgca
tccctgtggtcctggagaccaaaattggagttatagccaccatgagggta
ctggggaccaaaccaggtcccctacaagagcaataaatactcttaacctc
aaggggctatccagctccaaggataacttgttctgttaaatccttagctg
gaaagccaggtatggtactaccgacctgttgatccagcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123515592_123516770
seq2: B6Ng01-063E03.b_46_1199

seq1  GAATTCCAAATCTTCATTACATATTTCATCTATAAATTGTTTTGTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATCTTCATTACATATTTCATCTATAAATTGTTTTGTATTTC  50

seq1  CCAAAAAATAAACAATTTCAGGGCCGAGGAGACGGTTCAGTTGGTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATAAACAATTTCAGGGCCGAGGAGACGGTTCAGTTGGTAAATG  100

seq1  CTTTCTCTACAAGCATGATCCGAGCCTGATCTCCAGAGCTCATATTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTACAAGCATGATCCGAGCCTGATCTCCAGAGCTCATATTAAGA  150

seq1  AGCCAAGGATGCCAGGTATATTTGCAATCTCAGCGATGAGGGAAGTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGATGCCAGGTATATTTGCAATCTCAGCGATGAGGGAAGTGGAC  200

seq1  ATAGTGGTGGGTTCCTGGAGCTCATTGGCTAGTCAGTCTGAGACCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGTGGGTTCCTGGAGCTCATTGGCTAGTCAGTCTGAGACCCTGTG  250

seq1  CCTCAGATATAAGGTAATGAATGGCAATCATGGTTGTACTTGAAACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATATAAGGTAATGAATGGCAATCATGGTTGTACTTGAAACTCCA  300

seq1  CATGCACATATGAGGTTACTATCCCCAGGAAAGATCTTTAGAACTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACATATGAGGTTACTATCCCCAGGAAAGATCTTTAGAACTCTTAG  350

seq1  ATCAAGGGCTCATAACACTAAGGACTTGTTAGTGAGTTAGAACTGTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGCTCATAACACTAAGGACTTGTTAGTGAGTTAGAACTGTTTAA  400

seq1  TATTGTTCTATCTCTGAAAATGGAGAAAGGTGAGAATTATAAAAAATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCTATCTCTGAAAATGGAGAAAGGTGAGAATTATAAAAAATAGA  450

seq1  TTTTAGAATCAAGAACTGATACAGCCATTGCATTGTGTCATAATATACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATCAAGAACTGATACAGCCATTGCATTGTGTCATAATATACTT  500

seq1  TACAGAAATGACAGTGTTTGGCTACCGCTTTTCTCCTGGATCAGTGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAATGACAGTGTTTGGCTACCGCTTTTCTCCTGGATCAGTGAGTG  550

seq1  ACAAGCCATCCTTTGCATATTCACCAGCTAACTCTGAGACTACAGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCATCCTTTGCATATTCACCAGCTAACTCTGAGACTACAGCAGAG  600

seq1  AGACTACTTTCTCTAGCTCAAAGCTTATGCCTGTCACTGCTTCCAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACTTTCTCTAGCTCAAAGCTTATGCCTGTCACTGCTTCCAACCTG  650

seq1  GCCTCCAGCCTGTTTTTGATGTACAGAGTATCAGAGAACTCACCATCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGCCTGTTTTTGATGTACAGAGTATCAGAGAACTCACCATCACA  700

seq1  ATTCAGTTAACACTCACCGTTTAAAATCAAATAGAGTTAAAGAAACTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTAACACTCACCGTTTAAAATCAAATAGAGTTAAAGAAACTTTG  750

seq1  CCCAGAGCTTCTGGCCCCTTTCTCTGTTTATTAGAATCAGGGGAACTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTTCTGGCCCCTTTCTCTGTTTATTAGAATCAGGGGAACTTCC  800

seq1  ACTGCTCTGATTTAAAACTCCAAACAGAGTAAGATGAAGAACTGATTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTGATTTAAAACTCCAAACAGAGTAAGATGAAGAACTGATTCTA  850

seq1  ATGGCAACTGCGATATCTGGATAGGAAAAATGATTCTGTGGGGCAGAGAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGGCAACTGCGATATCTGGATAGGAAAAATGATTCTGTGGGGCAGAG-A  899

seq1  AAAATTTTGTTGGTGTTAAGAAAAAAAAAAAGATTAAAAGTAAAGATTAG  950
      |||||||||||||||||||| |||||||||||||| ||||| ||||||||
seq2  AAAATTTTGTTGGTGTTAAG-AAAAAAAAAAGATT-AAAGT-AAGATTAG  946

seq1  TAATCACTTAATGAAGACAAATTTTAGGTGTTTTATTTCACTTATAAAAC  1000
      | ||||||| |||||||||||||| ||  | |||||||||||||||||||
seq2  T-ATCACTT-ATGAAGACAAATTTAAG--GGTTTATTTCACTTATAAAAC  992

seq1  AATCTTTAGTTCTGAGTAACTTTTAGCTAAGTAGCAAGTATGGCTAACTT  1050
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  AATCTTTAGTTCTGAGTA--CTTTAGCTAAGTAGCAAGTATGGCTAACTT  1040

seq1  GTAAAGTTACATCTTAAATTTCATTATCAGTATAAAACTTCAAAAATGTA  1100
      || |||||||||||||||||||||||||||||| |||||||  ||||| |
seq2  GT-AAGTTACATCTTAAATTTCATTATCAGTAT-AAACTTC--AAATG-A  1085

seq1  ACAATTCTTT-CTGTAAAAATGTCTAAGAACTTAAAGTTAGGCAGTTTGA  1149
      | |||||||| |||| ||||||||||   |||  ||||||||||| ||||
seq2  AAAATTCTTTCCTGT-AAAATGTCTA--GACT--AAGTTAGGCAG-TTGA  1129

seq1  TAATTAGGCAAAATAAAATTAGACCTTACT  1179
      | ||||||| ||||||   |||||||||||
seq2  T-ATTAGGC-AAATAA---TAGACCTTACT  1154

seq1: chr7_123652021_123652812
seq2: B6Ng01-063E03.g_66_857 (reverse)

seq1  TGGTGGCTATAACTCCAATTTTGGTCTCCAGGACCACAGGGATGCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTATAACTCCAATTTTGGTCTCCAGGACCACAGGGATGCAAATG  50

seq1  TTGCACATGGGTACTTACATGCAGGCACCCACATGTACACATAAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATGGGTACTTACATGCAGGCACCCACATGTACACATAAAATAAA  100

seq1  AACAAATACTTTTTTTTTTAAAAGAAGACGTTACCTATGTCTAAGCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATACTTTTTTTTTTAAAAGAAGACGTTACCTATGTCTAAGCCAAT  150

seq1  GGTCTGTTGCTATGAAGAGACACCATGACCGTGGCAACTCTTATAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTTGCTATGAAGAGACACCATGACCGTGGCAACTCTTATAAAGGA  200

seq1  AAACATTTAACTGGGCCTTGCTTACAGTTCCAGAGGTTTAGTCCAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTAACTGGGCCTTGCTTACAGTTCCAGAGGTTTAGTCCAGTATT  250

seq1  CTGGTGGGGAGCATGGTATCAGGCAGGCAGATGCTAGAAAAGGAACTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGGAGCATGGTATCAGGCAGGCAGATGCTAGAAAAGGAACTGAG  300

seq1  AGTTCTACATCTGGATCCACATGCAGCAGCAAGAGAGAACCACTGGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACATCTGGATCCACATGCAGCAGCAAGAGAGAACCACTGGGCCT  350

seq1  GGCTTGGGCTTTTGAAAACTCAAAGCCTACCCCTAGTGACACACTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGCTTTTGAAAACTCAAAGCCTACCCCTAGTGACACACTTCTTC  400

seq1  CTGTAAGGCCATACCTCCTGGTCCTTTTAAATAGTGCTATTCCATAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGCCATACCTCCTGGTCCTTTTAAATAGTGCTATTCCATAAGCA  450

seq1  TTTAAATGTTTGAACCTAAGGGAGCCATTCTCATTCAAACCCCTAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTTTGAACCTAAGGGAGCCATTCTCATTCAAACCCCTAACTGT  500

seq1  ATATCTTAAAGTTTATCTGTTTGCTGAGAAAGCCTTATGCTCTTATCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAAAGTTTATCTGTTTGCTGAGAAAGCCTTATGCTCTTATCTTG  550

seq1  AGTTCTTTCCAGGGCAGAACAGCTTAGCCATTGTACACAAGATCTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCCAGGGCAGAACAGCTTAGCCATTGTACACAAGATCTGTTTG  600

seq1  TTCTGTCCTTTGTCTATTTTATCAGTACTTTGAGAGGTCATAAAAATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCTTTGTCTATTTTATCAGTACTTTGAGAGGTCATAAAAATTGG  650

seq1  ATACTCTTTTTTTTTTTTTTTAAAAGATTTTCGAGACCTGATCCTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTTTTTTTTTTTTTTAAAAGATTTTCGAGACCTGATCCTCTTCA  700

seq1  TAGCCCCGGCTATCTTGGAACTCATTATGTAAACCAGGCTGGCCTTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCGGCTATCTTGGAACTCATTATGTAAACCAGGCTGGCCTTGAAC  750

seq1  TCACCAGAGATCCTCCTGCCTCTGCCTCTAGTGCTAGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGATCCTCCTGCCTCTGCCTCTAGTGCTAGAATTC  792