BAC Information

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BAC

Clone NameB6Ng01-063G03
Chromosome7 (Build37)
Map Location 18,755,055 - 18,756,178
singlet/doubletsinglet
Overlap genenone
Upstream genePsg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12
Downstream geneIgfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063G03.bB6Ng01-063G03.g
ACCDH883499DH883500
length1,1061,175
definitionDH883499|Mus musculus domesticus DNA, BAC clone: B6Ng01-063G03, 5' end.DH883500|Mus musculus domesticus DNA, BAC clone: B6Ng01-063G03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcagtgagagattatgctacctcagagccaggtgttagaaag
acgtagcattcaaatataaggagatatgtttttgaatatctgatatcctt
catcatttataatttttcttatttggttctatttctctaccttttggtta
atttggctaaagtttgccggtcttggtgcacttttcaaagaaccaactcc
tcatcctccccccccctttcaattccatttcatccctgacttttattatt
ttttctattataatataatatctgttattggtgttgcttgtttatgtctt
tccaagacctttgtgtaaatcattattaaaatgtgatattgccagttttt
gatgtaggcacctagtacaataaaaattttctcaggatttattgtacagg
gcttcttcctcattgcaatattccctcccaatgaaaacagttagacatag
aagaaagggaaggcttacacatgaagagaaacagcaggaagaatgtaata
aatgggtttgagtttaatttatctcttatgagactgtgaacatcctggaa
agagacaatgttgtcaacaatggcagatacaaggccattgtttctccctt
cagaggtataggtctagcaggggtgaaagagatgtcacgagggggtgaga
aaccagttgtttctagaagaaaacacagaagtggctatactgaaacattt
tatatgtgcttctggatcaggttctgagatgaatcccagaggatgtcaca
cagataccaatggatagaaaatgagttgttacaggggaaatggctcttgg
gatgttcgaagaggccttgagttactccagaggaagccaaataagaaatg
cattgatgggtttcactacattgtggctaagggttgaggacagatgagca
ttactatccacagctaacactttagagactgaacttaatattgcctcaga
aagtgagtacaggaggtgcctaggtgcacagtaccaaagccaatgaaagg
tggaaaagtattgagaaaatattggaatcaacttaacttcaggcgaagat
gagcaattcccttaaatttttttgctcatgggaaaatttgtttaatatgc
cgtttg
gaattcagaaggtggaaagatctcccatgctcatggattggcaggattga
tatagtaaaaatggccattttgctgaaagcaatctacagattcaatgcaa
tctccatcaaaattacaaaacaattcttcactgagttagaaagggcaatt
tgcaaattcatctgcaattaaaaaaaaaactaggacagcaaaaactattc
ccaacaataaaagaatttctggtggattcaccatccttgaccttaagctg
tactacagagcaattgtgataaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaacctgcatggtactggtacaatgacagacaggtagatcaata
gaatagagaaaacccaaaaatgaacccatacaccgtttgtcacttgatct
ttgacaaaggagctaaaaccatacagtgaagaaaagacagcattttcaaa
aaatattgatggcccaactggaagtcagcatgcaaaaaaatgtgaattga
tcctttcatttccctgtacaaagcacaagtccagatggaccaagagcctc
tacataaaataagagacactgaaactcatagaggagaaagtggagaagag
ccttgaacatatgggcacagggggaaaattactgaaaatgaacaccaatg
ggttgtactgtaagatcaagaattgacaaatggtacctcaaaaaattgca
aaacatatctaatgcaaaggaaaactctcaataagacaaaaaggcaacca
acagattgggaaaaagatctttaccagtccattgccagtggtattgcaag
atggtacaatcactctggaaatcagtttggcggttcctccgaaaattgga
caagatactataggaggatccagcaatacactcctggcatatacccagaa
agatgcgcaacatataaataggacacatgctccactatggtcatagcagc
tatggatagtagtcagaactgaagactagacggtcctcacagagatgata
agaaatgagtacatacacaataaggtactatgcagctataaaacatgata
tgaatctaagcatgtaagatcgagatgcatctgagtgagtaccatcaaga
cacatgatactcagtatggattgacgagcctgtacggtatgcaatctgac
tgacagcagtcactgtctcgatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_18755055_18756178
seq2: B6Ng01-063G03.b_46_1151 (reverse)

seq1  CAAACTGGCATATTTTAACACATTTTTCCCATGGAGACAAAAAAAATTTA  50
      ||||| |||||| || |||| | |||||||||   ||  |||||||||||
seq2  CAAAC-GGCATA-TTAAACA-AATTTTCCCAT---GAGCAAAAAAATTTA  44

seq1  AGTGGAATTGCTCATCTTTCTGCCTGAAGTTAAGTTTGATTTTCAATATT  100
      || |||||||||||||||   ||||||||||||| |||| || |||||||
seq2  AG-GGAATTGCTCATCTT--CGCCTGAAGTTAAG-TTGA-TTCCAATATT  89

seq1  TTTCTTCAATACTTTTCCACCTATCATTGGCTTTATGTTACTGTGCACCT  150
      ||   ||||||||||||||||| ||||||||||  || ||||||||||||
seq2  TT--CTCAATACTTTTCCACCTTTCATTGGCTT--TGGTACTGTGCACCT  135

seq1  AGGCACCTCCTGTACTCACTTTCTGGAGGCAATATTAAGTTCAGTCTCTA  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGCACCTCCTGTACTCACTTTCT-GAGGCAATATTAAGTTCAGTCTCTA  184

seq1  AAGTGTTAGCCTGTGGATAGTAATGCTCATCTGTCCTCAACCCTTAGCCA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTAG-CTGTGGATAGTAATGCTCATCTGTCCTCAACCCTTAGCCA  233

seq1  CAATGTAGTGAAACCCATCAATGCATTTCTTATTTGGCTTCCTCTGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGTGAAACCCATCAATGCATTTCTTATTTGGCTTCCTCTGGAGT  283

seq1  AAACTCAAGGCCTCTTCGAACATCCCAAGAGCCATTTCCCCTGTAACAAC  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACTCAAGGCCTCTTCGAACATCCCAAGAGCCATTTCCCCTGTAACAAC  332

seq1  TCATTTTCTATCCATTGGTATCTGTGTGACATCCTCTGGGATTCATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTATCCATTGGTATCTGTGTGACATCCTCTGGGATTCATCTCA  382

seq1  GAACCTGATCCAGAAGCACATATAAAATGTTTCAGTATAGCCACTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGATCCAGAAGCACATATAAAATGTTTCAGTATAGCCACTTCTGT  432

seq1  GTTTTCTTCTAGAAACAACTGGTTTCTCACCCCCTCGTGACATCTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTCTAGAAACAACTGGTTTCTCACCCCCTCGTGACATCTCTTTC  482

seq1  ACCCCTGCTAGACCTATACCTCTGAAGGGAGAAACAATGGCCTTGTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCTAGACCTATACCTCTGAAGGGAGAAACAATGGCCTTGTATCT  532

seq1  GCCATTGTTGACAACATTGTCTCTTTCCAGGATGTTCACAGTCTCATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTTGACAACATTGTCTCTTTCCAGGATGTTCACAGTCTCATAAG  582

seq1  AGATAAATTAAACTCAAACCCATTTATTACATTCTTCCTGCTGTTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATTAAACTCAAACCCATTTATTACATTCTTCCTGCTGTTTCTCT  632

seq1  TCATGTGTAAGCCTTCCCTTTCTTCTATGTCTAACTGTTTTCATTGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTAAGCCTTCCCTTTCTTCTATGTCTAACTGTTTTCATTGGGAG  682

seq1  GGAATATTGCAATGAGGAAGAAGCCCTGTACAATAAATCCTGAGAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTGCAATGAGGAAGAAGCCCTGTACAATAAATCCTGAGAAAATT  732

seq1  TTTATTGTACTAGGTGCCTACATCAAAAACTGGCAATATCACATTTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTACTAGGTGCCTACATCAAAAACTGGCAATATCACATTTTAAT  782

seq1  AATGATTTACACAAAGGTCTTGGAAAGACATAAACAAGCAACACCAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTACACAAAGGTCTTGGAAAGACATAAACAAGCAACACCAATAA  832

seq1  CAGATATTATATTATAATAGAAAAAATAATAAAAGTCAGGGATGAAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTATATTATAATAGAAAAAATAATAAAAGTCAGGGATGAAATGG  882

seq1  AATTGAAAGGGGGGGGGAGGATGAGGAGTTGGTTCTTTGAAAAGTGCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAGGGGGGGGGAGGATGAGGAGTTGGTTCTTTGAAAAGTGCACC  932

seq1  AAGACCGGCAAACTTTAGCCAAATTAACCAAAAGGTAGAGAAATAGAACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGGCAAACTTTAGCCAAATTAACCAAAAGGTAGAGAAATAGAACC  982

seq1  AAATAAGAAAAATTATAAATGATGAAGGATATCAGATATTCAAAAACATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAAATTATAAATGATGAAGGATATCAGATATTCAAAAACATA  1032

seq1  TCTCCTTATATTTGAATGCTACGTCTTTCTAACACCTGGCTCTGAGGTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTATATTTGAATGCTACGTCTTTCTAACACCTGGCTCTGAGGTAG  1082

seq1  CATAATCTCTCACTGATGGAATTC  1124
      ||||||||||||||||||||||||
seq2  CATAATCTCTCACTGATGGAATTC  1106