BAC Information

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BAC

Clone NameB6Ng01-063P17
Chromosome7 (Build37)
Map Location 122,664,574 - 122,769,634
singlet/doubletdoublet
Overlap geneSox6
Upstream genePde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063P17.bB6Ng01-063P17.g
ACCDH883909DH883910
length1,0971,142
definitionDH883909|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P17, 5' end.DH883910|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,768,516 - 122,769,634)(122,664,574 - 122,665,737)
sequence
gaattcaagagcagggagctgcgttccagaaaggaagatgaggtgggatt
gatggccttccatctgctctctaacaccttcctgcacaccttgccgtgga
gcaagactcctccattgctttcctggagtgtactaagagggttcaagatt
gaagatcctgggtagaagcttactcttggaaatttgtttattctttctgc
tgattcagctgccaaggaaattactgtagcatcgacagtggaccatcaat
gtgcaagtgtatccatctaggaaaatcactgaataacataccttgtctat
ttatataaaacgactatgctcgaaaattgcaataaagcacaaaagctttg
aacttccagcaaaataagcacattaagatgttttggggctaaaatgacct
ggaggttcatttgtcattccatcctataatatatgtaaacacactggcag
gaaggatgccttggagttgatgtggagacaagagggtgctcttgagaagc
tggcaaacttagcaaaaatgccccagaagctttgctaggagaagggcaaa
atgcagaggtaaacaagtcctctggcttatgtggtggagcattcacagta
gccacatgcaaggaaacacaagggacgttgctgtgtataaaatttgtgcc
aatactaagctcaccactggagtaaaggttatctttttatttgcttttcc
ttttgaatgttgggggaagggcaattagctgaggacaagagggaaattgt
tggggactgctgtaagataaactattttgtctttgtgttgacattatatt
ggctacagcctacacagaggggattgcctggaaaggaaaaaaaagtcagg
aaagagaggcattactattttttagcgtgtgtgggtgcacccgcagcaga
ggggcccgtgttttcttatggctcagatggcaaagctaagcattcagcta
cgcagaaaaagtgccttttttgttttctgactgcagagtcagcattccca
gggaccatgaatgccattttgtcacacgttcatagacataaatctcttgt
ttttcatcattattcttgccgtcatgggtgcaatgacatttgagcgt
gaattcccacttcctagcaggagcccagccctggctagaaggttattcta
ttgttcaactgatttacataccttaatttgcatttatctatcttttaata
ttaaatatatctacatataaacacttaaatatatttaattgcttttgtaa
aaattctgaaaaataatttcattttgtttaaaagtaaaaccaaaataaaa
gaagaaagggaggttattttagcaggatttagtagctggcgtgcctaatc
tgatataaagccaacaaggcagacattacatctttagagccagctgagga
gccacaggaacacacccataagacagttgtaatatgtatgccctatggtc
ttggtggcagaagaaaaaggaatgcaaaaagaagtcaacaacagattttg
tcaagaagaaatgcttcagttggcttaattataatgccgtctaggaagag
aatggcgttttaggaaaaagtataagatttggaattctacattcagaaaa
ctcaaagaagctgtacagcatccaaatagaaaatgcacactgagtaggag
atgaagttgatcagggagagagttacagcacagccggtcaggcaagctat
gtcgatgcttgctgttcaccatgcaggtggcaagatcctttgcgtgctta
aaaatggaagtaagatctggctaccacatgatttctcgaactaaggccta
aatttagttctgagatgcttagtcaaggtaacaggaatgcatctctactt
gtataggtcatctattaatgcaggagaatagatagttttagataatgctg
ttaatgtttagcttagaatatgtagtaataatgtctttaactgtatattt
tactaatttggttttcctttctttccttcttctttttcttttgcaaagaa
ttcacacatatactctctcatctagtcttttatctgagagtttattactc
tacccccacctcagtctctgtctttctggaaagcactcacacatacactt
ttattattcactatatccatgcacagcatttgcttaccattttttgatgg
gagtgatcagtatcttatttttaaggtatgattatctcaccccaggttaa
tgctaaaatataaggatttcttatgcctcacagttttttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122768516_122769634
seq2: B6Ng01-063P17.b_49_1145 (reverse)

seq1  ACGCTCAAATGTCATGTGCACACCCAATGACGGGCAAGAATAATGATGAA  50
      ||||||||||||||| ||||   || ||||| |||||||||||||||| |
seq2  ACGCTCAAATGTCAT-TGCA---CCCATGAC-GGCAAGAATAATGATG-A  44

seq1  AAAACAAGAGATCTATGTCTATGAAACCGTGTTGGACAAAATGGGCCATT  100
      |||||||||||| ||||||||||||  |||||  ||||||||||  ||||
seq2  AAAACAAGAGATTTATGTCTATGAA--CGTGT--GACAAAATGG--CATT  88

seq1  CATTGTGTTCCCCTGGGAATGCCTGGACTCTGCAGTCAGAAAACAAAAAA  150
      ||| ||    ||||||||||||   |||||||||||||||||||||||||
seq2  CATGGT----CCCTGGGAATGC--TGACTCTGCAGTCAGAAAACAAAAAA  132

seq1  GGCACTTTTTTCCTGCCGTAGGCTGAATGCTTAGCTTTGCCATCTGAGCC  200
      ||||||||||  ||| |||| |||||||||||||||||||||||||||||
seq2  GGCACTTTTT--CTG-CGTA-GCTGAATGCTTAGCTTTGCCATCTGAGCC  178

seq1  ATAAGAAAACACGGGCCCCTCTGCTGCGGGTGCACCCACACACGCTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAACACGGGCCCCTCTGCTGCGGGTGCACCCACACACGCTAAAA  228

seq1  AATAGTAATGCCTCTCTTTCCTGACTTTTTTTTCCTTTCCAGGCAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAATGCCTCTCTTTCCTGACTTTTTTTTCCTTTCCAGGCAATCCC  278

seq1  CTCTGTGTAGGCTGTAGCCAATATAATGTCAACACAAAGACAAAATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGGCTGTAGCCAATATAATGTCAACACAAAGACAAAATAGTT  328

seq1  TATCTTACAGCAGTCCCCAACAATTTCCCTCTTGTCCTCAGCTAATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACAGCAGTCCCCAACAATTTCCCTCTTGTCCTCAGCTAATTGCC  378

seq1  CTTCCCCCAACATTCAAAAGGAAAAGCAAATAAAAAGATAACCTTTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAACATTCAAAAGGAAAAGCAAATAAAAAGATAACCTTTACTC  428

seq1  CAGTGGTGAGCTTAGTATTGGCACAAATTTTATACACAGCAACGTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGAGCTTAGTATTGGCACAAATTTTATACACAGCAACGTCCCTT  478

seq1  GTGTTTCCTTGCATGTGGCTACTGTGAATGCTCCACCACATAAGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCTTGCATGTGGCTACTGTGAATGCTCCACCACATAAGCCAGAG  528

seq1  GACTTGTTTACCTCTGCATTTTGCCCTTCTCCTAGCAAAGCTTCTGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTTACCTCTGCATTTTGCCCTTCTCCTAGCAAAGCTTCTGGGGC  578

seq1  ATTTTTGCTAAGTTTGCCAGCTTCTCAAGAGCACCCTCTTGTCTCCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTAAGTTTGCCAGCTTCTCAAGAGCACCCTCTTGTCTCCACAT  628

seq1  CAACTCCAAGGCATCCTTCCTGCCAGTGTGTTTACATATATTATAGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCAAGGCATCCTTCCTGCCAGTGTGTTTACATATATTATAGGATG  678

seq1  GAATGACAAATGAACCTCCAGGTCATTTTAGCCCCAAAACATCTTAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAAATGAACCTCCAGGTCATTTTAGCCCCAAAACATCTTAATGT  728

seq1  GCTTATTTTGCTGGAAGTTCAAAGCTTTTGTGCTTTATTGCAATTTTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTGCTGGAAGTTCAAAGCTTTTGTGCTTTATTGCAATTTTCGA  778

seq1  GCATAGTCGTTTTATATAAATAGACAAGGTATGTTATTCAGTGATTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTCGTTTTATATAAATAGACAAGGTATGTTATTCAGTGATTTTCC  828

seq1  TAGATGGATACACTTGCACATTGATGGTCCACTGTCGATGCTACAGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGATACACTTGCACATTGATGGTCCACTGTCGATGCTACAGTAAT  878

seq1  TTCCTTGGCAGCTGAATCAGCAGAAAGAATAAACAAATTTCCAAGAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGCAGCTGAATCAGCAGAAAGAATAAACAAATTTCCAAGAGTAA  928

seq1  GCTTCTACCCAGGATCTTCAATCTTGAACCCTCTTAGTACACTCCAGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACCCAGGATCTTCAATCTTGAACCCTCTTAGTACACTCCAGGAA  978

seq1  AGCAATGGAGGAGTCTTGCTCCACGGCAAGGTGTGCAGGAAGGTGTTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGAGGAGTCTTGCTCCACGGCAAGGTGTGCAGGAAGGTGTTAGA  1028

seq1  GAGCAGATGGAAGGCCATCAATCCCACCTCATCTTCCTTTCTGGAACGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATGGAAGGCCATCAATCCCACCTCATCTTCCTTTCTGGAACGCA  1078

seq1  GCTCCCTGCTCTTGAATTC  1119
      |||||||||||||||||||
seq2  GCTCCCTGCTCTTGAATTC  1097

seq1: chr7_122664574_122665737
seq2: B6Ng01-063P17.g_69_1210

seq1  GAATTCCCACTTCCTAGCAGGAGCCCAGCCCTGGCTAGAAGGTTATTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTTCCTAGCAGGAGCCCAGCCCTGGCTAGAAGGTTATTCTA  50

seq1  TTGTTCAACTGATTTACATACCTTAATTTGCATTTATCTATCTTTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAACTGATTTACATACCTTAATTTGCATTTATCTATCTTTTAATA  100

seq1  TTAAATATATCTACATATAAACACTTAAATATATTTAATTGCTTTTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATCTACATATAAACACTTAAATATATTTAATTGCTTTTGTAA  150

seq1  AAATTCTGAAAAATAATTTCATTTTGTTTAAAAGTAAAACCAAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGAAAAATAATTTCATTTTGTTTAAAAGTAAAACCAAAATAAAA  200

seq1  GAAGAAAGGGAGGTTATTTTAGCAGGATTTAGTAGCTGGCGTGCCTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGAGGTTATTTTAGCAGGATTTAGTAGCTGGCGTGCCTAATC  250

seq1  TGATATAAAGCCAACAAGGCAGACATTACATCTTTAGAGCCAGCTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAGCCAACAAGGCAGACATTACATCTTTAGAGCCAGCTGAGGA  300

seq1  GCCACAGGAACACACCCATAAGACAGTTGTAATATGTATGCCCTATGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGAACACACCCATAAGACAGTTGTAATATGTATGCCCTATGGTC  350

seq1  TTGGTGGCAGAAGAAAAAGGAATGCAAAAAGAAGTCAACAACAGATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCAGAAGAAAAAGGAATGCAAAAAGAAGTCAACAACAGATTTTG  400

seq1  TCAAGAAGAAATGCTTCAGTTGGCTTAATTATAATGCCGTCTAGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGAAATGCTTCAGTTGGCTTAATTATAATGCCGTCTAGGAAGAG  450

seq1  AATGGCGTTTTAGGAAAAAGTATAAGATTTGGAATTCTACATTCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGTTTTAGGAAAAAGTATAAGATTTGGAATTCTACATTCAGAAAA  500

seq1  CTCAAAGAAGCTGTACAGCATCCAAATAGAAAATGCACACTGAGTAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAGCTGTACAGCATCCAAATAGAAAATGCACACTGAGTAGGAG  550

seq1  ATGAAGTTGATCAGGGAGAGAGTTACAGCACAGCCGGTCAGGCAAGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTGATCAGGGAGAGAGTTACAGCACAGCCGGTCAGGCAAGCTAT  600

seq1  GTCGATGCTTGCTGTTCACCATGCAGGTGGCAAGATCCTTTGCGTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATGCTTGCTGTTCACCATGCAGGTGGCAAGATCCTTTGCGTGCTTA  650

seq1  AAAATGGAAGTAAGATCTGGCTACCACATGATTTCTCGAACTAAGGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAGTAAGATCTGGCTACCACATGATTTCTCGAACTAAGGCCTA  700

seq1  AATTTAGTTCTGAGATGCTTAGTCAAGGTAACAGGAATGCATCTCTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTTCTGAGATGCTTAGTCAAGGTAACAGGAATGCATCTCTACTT  750

seq1  GTATAGGTCATCTATTAATGCAGGAGAATAGATAGTTTTAGATAATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGTCATCTATTAATGCAGGAGAATAGATAGTTTTAGATAATGCTG  800

seq1  TTAATGTTTAGCTTAGAATATGTAGTAATAATGTCTTTAACTGTTATATT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTAATGTTTAGCTTAGAATATGTAGTAATAATGTCTTTAACTG-TATATT  849

seq1  TTACTAATTT-GTTTTCCTTTCTTTCCTTCTTCTTTTTCTTTTTGCAAAG  899
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TTACTAATTTGGTTTTCCTTTCTTTCCTTCTTCTTTTTC-TTTTGCAAAG  898

seq1  AATTCACACATATACTCTCTCATCTAGTCCTTTATCTGAGAGTTTATTAC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTCACACATATACTCTCTCATCTAGTCTTTTATCTGAGAGTTTATTAC  948

seq1  TCTACCCCCACCTCAGTCTCTGTCTTTCTGGAAAAGCACTCACACATACA  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTACCCCCACCTCAGTCTCTGTCTTTCTGG-AAAGCACTCACACATACA  997

seq1  ACCTTTTATTTAATCACTATAATCCCATGGCACCAGCATTTGCTTACCCA  1049
        |||||| ||| ||||||||   |||| ||| ||||||||||||| |||
seq2  --CTTTTA-TTATTCACTATA--TCCAT-GCA-CAGCATTTGCTTA-CCA  1039

seq1  TTTTATGGATTGGGAGGTGATACAGTAATCATATTTTAGAGTTATGAAAT  1099
      |||| ||   ||||| ||||| |||| ||| ||||||  || |||||   
seq2  TTTTTTG--ATGGGA-GTGAT-CAGT-ATCTTATTTTTAAGGTATGA---  1081

seq1  TTATCTCACCACAGTTTAATGGTTAAAAATATAAAGATATTCTTATGCCT  1149
      |||||||||| ||| |||||| |  ||||||||| ||| |||||||||||
seq2  TTATCTCACCCCAGGTTAATGCT--AAAATATAAGGAT-TTCTTATGCCT  1128

seq1  CACCACTGTTTTCTA  1164
      || || | |||||||
seq2  CA-CAGTTTTTTCTA  1142