BAC Information

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BAC

Clone NameB6Ng01-064J05
Chromosome7 (Build37)14 (Build37)
Map Location 49,226,220 - 49,226,69486,318,166 - 86,319,334
singlet/doubletsingletsinglet
Overlap geneGprc2a-rs1
Upstream gene4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422
Downstream geneEG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J05.bB6Ng01-064J05.g
ACCDH884321DH884322
length1,0311,146
definitionDH884321|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J05, 5' end.DH884322|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,226,220 - 49,226,694)(86,318,166 - 86,319,334)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatataaaatatctcggcgtg
actctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccct
gaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgct
catggattggcaggaccaacattgtaaaaatggctatcttgccaaaagca
atctacagattcaatgcaatccccattaaaattccaactcaattcttcaa
cgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccga
ggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcacc
atgcctgacctaaagctttactacagagcaattgtgataaaaactgcatg
gtactggtatagagacagacaagtggaccaatggaatagaattgaagacc
cagaaatgaacccacacacctatggtcacttaatcttcgacaagggagcc
aaaaccatccagtggaagaaagacagcattttcaacaattggtgctggca
caactggttgttatcatgtagaagaatgcgaatcgatccatacttatctc
cttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaacca
gagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat
gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaa
gatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcagg
caaaagacactgtctatagacaaaaagaccaccaacagactgggaaagga
tctttacctatcctaaatcagataggggactaatatccatttatgttttt
tacacagagtctctctctacccttggagctcaccaggctagttggccaca
gagctgcagtaatccccctttacttcccagt
gaattccaagagcataaaacagggagacagagactgtaaggtaaagagaa
gagagtcacaattgcaaaagttcttcataataaaacaagccaaataaata
aataaataaataaataaataaataaataaataaataaataaataagagga
tgaaaaacatctcaccatgctgagtttctgctatacaagtctcaattaat
aatcaaggttctataataccagagtgaaaaattttgagagaaagtgcaga
ttgcttcctgagagcttctgtgatgctaatagaatctttagactccattg
tcatcctgatgattcactgagaaaaggcaagcgcttttttttggccttca
ttatcagcccatttctggcctgatttgctttggatgatttagactctgct
gcacctgaactgtgtcttttcatatcagaaaagggaatgaaagatgaaca
gaagataaaaaagaagcaaaagggaaaaaaaggggggaaatgttgacttt
ttaaaaaacatcctagcatcccagcacaatgctcaaagtggatgttttat
gtttttttgcagagcttctctcaaccttatgaccccaaacatgcttctat
tatttttgtctttaaaggtcattgcttttatagtatctaaagcgaaaccc
attctgttttgccttttgtttctttcaggctgtctgcaacccacagcaga
gtatcaggagatccaactacactccagtgctgttgtcattactcactgta
ggcactctctgtaccagctgcttccatttgtcagctgaagccggacacac
atcatttgcccattactgaacaactttcgtaatttcggaagaatttttaa
ctgactccagtgcaagctcccattgcattgcaaaggagtgatctctgtca
ttgtccctggctcaagtgacaccctgaatctcctgtagtgaacatagaat
ttggagcatacaacatctcatctctctctattgaaagattcaagcgctat
cagtgacagaccagtgcacaaagaattttttttccctggattccataatc
ctggtatcattgagtgggtatcacacctcggaatggattactgcttccag
gcgcatacccatagaacagaatctcatgcactcagattattgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49226220_49226694
seq2: B6Ng01-064J05.b_126_601 (reverse)

seq1  GGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCA  50
      |||||| ||||||||||| ||||| |||||||||||||||||||||||||
seq2  GGTTTTGGCTCCCTTGTCGAAGATTAAGTGACCATAGGTGTGTGGGTTCA  50

seq1  TCTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTATCTGTCGCTATAC  100
      | ||||||||||||||||||||||||||||| |||| |||||| ||||||
seq2  TTTCTGGGTCTTCAATTCTATTCCATTGGTCCACTTGTCTGTCTCTATAC  100

seq1  GAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTC  150
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTC  150

seq1  AGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTG  200

seq1  GTATTTTAGG-TTTTTGTTATTCCAAATGAATCTGCTGATTGCCCTTTCT  249
       |||  | || |||||||||||||| |||||| |||  ||||| | ||||
seq2  CTATCCTCGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGCTCCTTCT  250

seq1  AATTCGTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCT  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTCGTTGAAGAATTGAGTTGGAATTTTAATGGGGATTGCATTGAATCT  300

seq1  GTAGACTGCTTTTGGCAAGATAGCGATTTTTACTATATTGATCCTGCCAA  349
      ||||| |||||||||||||||||| |||||||| || ||| |||||||||
seq2  GTAGATTGCTTTTGGCAAGATAGCCATTTTTACAATGTTGGTCCTGCCAA  350

seq1  TCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCT  400

seq1  TTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTTCTTAGT  449
      |||||||| ||||||||||| |||||||||||||||||||||| ||| ||
seq2  TTCTTCAGGGACTTGAAGTTTTTATCATACAGATCTTTCACTTCCTTCGT  450

seq1  TAGAATCACGCCAAAGTATTTTATAT  475
      |||| ||||||| |  ||||||||||
seq2  TAGAGTCACGCCGAGATATTTTATAT  476

seq1: chr14_86318166_86319334
seq2: B6Ng01-064J05.g_69_1214

seq1  GAATTCCAAGAGCATAAAACAGGGAGACAGAGACTGTAAGGTAAAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGCATAAAACAGGGAGACAGAGACTGTAAGGTAAAGAGAA  50

seq1  GAGAGTCACAATTGCAAAAGTTCTTCATAATAAAACAAGCCAAATAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCACAATTGCAAAAGTTCTTCATAATAAAACAAGCCAAATAAATA  100

seq1  AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGAGGA  150

seq1  TGAAAAACATCTCACCATGCTGAGTTTCTGCTATACAAGTCTCAATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACATCTCACCATGCTGAGTTTCTGCTATACAAGTCTCAATTAAT  200

seq1  AATCAAGGTTCTATAATACCAGAGTGAAAAATTTTGAGAGAAAGTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGTTCTATAATACCAGAGTGAAAAATTTTGAGAGAAAGTGCAGA  250

seq1  TTGCTTCCTGAGAGCTTCTGTGATGCTAATAGAATCTTTAGACTCCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTGAGAGCTTCTGTGATGCTAATAGAATCTTTAGACTCCATTG  300

seq1  TCATCCTGATGATTCACTGAGAAAAGGCAAGCGCTTTTTTTTGGCCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGATGATTCACTGAGAAAAGGCAAGCGCTTTTTTTTGGCCTTCA  350

seq1  TTATCAGCCCATTTCTGGCCTGATTTGCTTTGGATGATTTAGACTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGCCCATTTCTGGCCTGATTTGCTTTGGATGATTTAGACTCTGCT  400

seq1  GCACCTGAACTGTGTCTTTTCATATCAGAAAAGGGAATGAAAGATGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGAACTGTGTCTTTTCATATCAGAAAAGGGAATGAAAGATGAACA  450

seq1  GAAGATAAAAAAGAAGCAAAAGGGAAAAAAAGGGGGGAAATGTTGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAAAAAGAAGCAAAAGGGAAAAAAAGGGGGGAAATGTTGACTTT  500

seq1  TTAAAAAACATCCTAGCATCCCAGCACAATGCTCAAAGTGGATGTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACATCCTAGCATCCCAGCACAATGCTCAAAGTGGATGTTTTAT  550

seq1  GTTTTTTTGCAGAGCTTCTCTCAACCTTATGACCCCAAACATGCTTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTGCAGAGCTTCTCTCAACCTTATGACCCCAAACATGCTTCTAT  600

seq1  TATTTTTGTCTTTAAAGGTCATTGCTTTTATAGTATCTAAAGCGAAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTCTTTAAAGGTCATTGCTTTTATAGTATCTAAAGCGAAACCC  650

seq1  ATTCTGTTTTGCCTTTTGTTTCTTTCAGGCTGTCTGCAACCCACAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTTGCCTTTTGTTTCTTTCAGGCTGTCTGCAACCCACAGCAGA  700

seq1  GTATCAGGAGATCCAACTACACTCCAGTGCTGTTGTCATTACTCACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGAGATCCAACTACACTCCAGTGCTGTTGTCATTACTCACTGTA  750

seq1  GGCACTCTCTGTACCAGCTGCTTCCATTTGTCAGCTGAAGCCGGACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTCTGTACCAGCTGCTTCCATTTGTCAGCTGAAGCCGGACACAC  800

seq1  ATCATTTGCCCATTACTGAACAACTTTCGTAATTTCGGAAGAATTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGCCCATTACTGAACAACTTTCGTAATTTCGGAAGAATTTTTAA  850

seq1  CTGACTCCAGTGCAAGCTCCCATTGCATTGCAAAGGAGTGATCTCTGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCAGTGCAAGCTCCCATTGCATTGCAAAGGAGTGATCTCTGTCA  900

seq1  TTGTCCCTGGCTCAAGTGACACCCTGAATCTCCTGTAGTGAACATAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTCCCTGGCTCAAGTGACACCCTGAATCTCCTGTAGTGAACAT-AGAA  949

seq1  TTTGGAGCCATACAAACATCTCATCCTCTCTCTATTGAAAGGATTCAAGG  1000
      ||||||| ||||| |||||||||| ||||||||||||||| ||||||| |
seq2  TTTGGAG-CATAC-AACATCTCAT-CTCTCTCTATTGAAA-GATTCAA-G  994

seq1  CGCTATCAGTGACAAGACCAGTTGCACATAGAATTTTTTTGTCCCTGGAT  1050
      ||||||||||||| ||||||| |||||| ||||||||||| |||||||| 
seq2  CGCTATCAGTGAC-AGACCAG-TGCACAAAGAATTTTTTT-TCCCTGGA-  1040

seq1  TTCCATTATTCCTGGTATTCAATGAGTGAGTATCACACTCAGAAATGGAT  1100
      ||||| || |||||||| ||| |||||| |||||||||   | |||||||
seq2  TTCCA-TAATCCTGGTA-TCATTGAGTGGGTATCACACCTCGGAATGGAT  1088

seq1  TATCATTGCTTTCAAGTCGCAATACTCAATAGAACAGATATCTTCATTGC  1150
      |   | ||| ||| || ||| |||| | |||||||||| ||| ||| |||
seq2  T---ACTGC-TTCCAGGCGC-ATAC-CCATAGAACAGA-ATC-TCA-TGC  1129

seq1  ATCTAAGTATTATTGCTCA  1169
      | || || |||||||||||
seq2  A-CTCAG-ATTATTGCTCA  1146