BAC Information

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BAC

Clone NameB6Ng01-065E12
Chromosome7 (Build37)
Map Location 125,831,020 - 125,944,641
singlet/doubletdoublet
Overlap geneMir16, 6330503K22Rik, 9030624J02Rik
Upstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5
Downstream gene2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065E12.bB6Ng01-065E12.g
ACCDH884798DH884799
length1,0721,068
definitionDH884798|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E12, 5' end.DH884799|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,831,020 - 125,832,117)(125,943,571 - 125,944,641)
sequence
gaattcaactttgtgacccgcgtggtgtgaagaccctggcaagccgtcct
tccatctccacatgtgtgccacgtgcactctcacaccaaagggaatttga
aaatttttctttttgagatggggtttctctgtgtagccctgtctgtccta
gaacttgctctgtagaccagactggcctgaactcagaatctccctgcctc
tgattccaaactgctgggattaaagatgtgtaccacatctggcttaattt
aaatttgttttaaaaagaggtctagatataactctgacagacgacttacc
acaggtaaagcctaggctgaatttctagcatcgcatgctaaggcctggta
tgagggttcaacacggaaaaagtgctaccaaacccaatagtctgagttca
acgtcagggacccatgggggaaggacaaacctgcaagtcgtcttctaacg
tctggggcagcagtggtggtacgtgttgccaccccttccttcaacaacta
aaaacaacacacacacacacacacacacacacacacacacacacacacac
acagccgctttgtccctgtgggatggccagggcctggaactggacactgc
ctgtggactttatgatggactcaggtacgtccctaactgcgctgcctctg
cttcctcacctctgaagatgatgccaagcatccgtaagcgttttgcccag
ggctgcagatgactgtgcttacaaatgcctcatctagttcccagtctaga
gcaacgacagcaaaaggaacagtaagtctgagtcagggctgagccggcac
cagtctgtgcatctgcaattgagaatggaagagcagcccagatcctcaaa
ccgttctcctggttctttatctaagaacctgccagtgatcaagcttccaa
gcacgatgggaaagctgccgtctgcccctggtggtcagagtgcttacatc
aggtgacacagatattccagtctgaactaagcagaaaggctccaggcact
gtagacagaagatcatacacagttgcctctgtcacctttcatgattttat
agtgggcccagtttgaccctac
gaattcttttgttgttgttgttgttgttttgttttgttttgttttttaat
gattacggattaaacacccttagtccaaaatctgaaattttagatgttcc
caattccataattttcagaatgcctcaagttcctatcatgacattccgcg
tcattgttgctgcacggtttggcagtgtgggcacagaacatgtcaggcac
gtccctgagcttgtaccgttagtctcctgtacagaatcataaaactgctg
tatgaaactctggctctgtggaaaggtgtatatgaaacacgagtgaattc
tacgcttagatttgggtcctatgaatgtccccaaatctaacaacaaaaca
ccaagtgtgaaatccttctcgccctgagcatctggatactgggggctcaa
tgtgcagcatgtgcggtgcacacccctctgatgaggaagagaatacacag
aagtagcatttttctttcagtctgtgtgtactgtatctcctagtggtgct
tctatcactggagtatagccacttgttaagcggatagggcccgcttttac
aaaggcctgggtaacaggaaaatatgactgcgaccgaagacacgtgtctc
caaaggtcattgagagatgctactcaccactgagaaaagaactgagaaat
cgtggaagtgggcgatgactttctgaatgattgactggagctgtgaaata
gaacacacgttgcttaataaacctctgtgctcaaaacgactgcctccctt
cagcactccccaccacaatcacagcagcccgggttgtttaaggaggaaac
agctgtggttagaccctgcctcagtcgcttgtccttctctaccccgtcct
tcagtggggactgtgtcttgggcctcagccccttctcccagtggcagttg
tcccatgatgataaagtaggtcgacccgtgtgctcagggaagagcctgtt
ctgcaatgctttctgctctctttcaaaataaatggaagcccaggtggctt
gagcacaagtgtgtttgccagggatgacttggaactctatatcttcacct
ctaccccccaaaggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125831020_125832117
seq2: B6Ng01-065E12.b_42_1113

seq1  GAATTCAACTTTGTGACCCGCGTGGTGTGAAGACCCTGGCAAGCCGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTGTGACCCGCGTGGTGTGAAGACCCTGGCAAGCCGTCCT  50

seq1  TCCATCTCCACATGTGTGCCACGTGCACTCTCACACCAAAGGGAATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCACATGTGTGCCACGTGCACTCTCACACCAAAGGGAATTTGA  100

seq1  AAATTTTTCTTTTTGAGATGGGGTTTCTCTGTGTAGCCCTGTCTGTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCTTTTTGAGATGGGGTTTCTCTGTGTAGCCCTGTCTGTCCTA  150

seq1  GAACTTGCTCTGTAGACCAGACTGGCCTGAACTCAGAATCTCCCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCTCTGTAGACCAGACTGGCCTGAACTCAGAATCTCCCTGCCTC  200

seq1  TGATTCCAAACTGCTGGGATTAAAGATGTGTACCACATCTGGCTTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAAACTGCTGGGATTAAAGATGTGTACCACATCTGGCTTAATTT  250

seq1  AAATTTGTTTTAAAAAGAGGTCTAGATATAACTCTGACAGACGACTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTTTAAAAAGAGGTCTAGATATAACTCTGACAGACGACTTACC  300

seq1  ACAGGTAAAGCCTAGGCTGAATTTCTAGCATCGCATGCTAAGGCCTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAAGCCTAGGCTGAATTTCTAGCATCGCATGCTAAGGCCTGGTA  350

seq1  TGAGGGTTCAACACGGAAAAAGTGCTACCAAACCCAATAGTCTGAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTCAACACGGAAAAAGTGCTACCAAACCCAATAGTCTGAGTTCA  400

seq1  ACGTCAGGGACCCATGGGGGAAGGACAAACCTGCAAGTCGTCTTCTAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGGGACCCATGGGGGAAGGACAAACCTGCAAGTCGTCTTCTAACG  450

seq1  TCTGGGGCAGCAGTGGTGGTACGTGTTGCCACCCCTTCCTTCAACAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCAGCAGTGGTGGTACGTGTTGCCACCCCTTCCTTCAACAACTA  500

seq1  AAAACAACACACACACACACACACACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACACACACACACACACACACACACACACACACACACACACACAC  550

seq1  ACAGCCGCTTTGTCCCTGTGGGATGGCCAGGGCCTGGAACTGGACACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGCTTTGTCCCTGTGGGATGGCCAGGGCCTGGAACTGGACACTGC  600

seq1  CTGTGGACTTTATGATGGACTCAGGTACGTCCCTAACTGCGCTGCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACTTTATGATGGACTCAGGTACGTCCCTAACTGCGCTGCCTCTG  650

seq1  CTTCCTCACCTCTGAAGATGATGCCAAGCATCCGTAAGCGTTTTGCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCACCTCTGAAGATGATGCCAAGCATCCGTAAGCGTTTTGCCCAG  700

seq1  GGCTGCAGATGACTGTGCTTACAAATGCCTCATCTAGTTCCCAGTCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGATGACTGTGCTTACAAATGCCTCATCTAGTTCCCAGTCTAGA  750

seq1  GCAACGACAGCAAAAGGAACAGTAGGTCTGAGTCAGGGCTGAGGCCGGCA  800
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  GCAACGACAGCAAAAGGAACAGTAAGTCTGAGTCAGGGCTGA-GCCGGCA  799

seq1  CCAGTCTGTGCATCTGCAATTGAGAAATGAAGAGCAGCCCAGATCCTCAG  850
      ||||||||||||||||||||||||||  ||||||||||||||||||||| 
seq2  CCAGTCTGTGCATCTGCAATTGAGAATGGAAGAGCAGCCCAGATCCTCA-  848

seq1  ACCCGTTCTCCTGGTTCTTTATCTAAGAACCTGCCAGTGATCAGGCTTCC  900
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACCGTTCTCCTGGTTCTTTATCTAAGAACCTGCCAGTGATCAAGCTTCC  898

seq1  AAGCACGATGGGAAAGCTGCCGCTCTGCCCCCTGGTGGTCAGAAGTGCTT  950
      |||||||||||||||||||||| |||| |||||||||||||| |||||||
seq2  AAGCACGATGGGAAAGCTGCCG-TCTG-CCCCTGGTGGTCAG-AGTGCTT  945

seq1  ACATCAAGATGACACAGATAATTCCAAGTCTTGAAACTAAAGCAGGAAAG  1000
      ||||| || |||||||||| ||||| |||||   |||| ||||| |||||
seq2  ACATC-AGGTGACACAGAT-ATTCC-AGTCT--GAACT-AAGCA-GAAAG  988

seq1  GCCTCCCAGGCACTGTAGGACCAGAAGATCAGTACACAGTTTGCCCTCTG  1050
      ||   |||||||||||||   |||||||||| |||||||||   ||||||
seq2  GC--TCCAGGCACTGTAG--ACAGAAGATCA-TACACAGTT--GCCTCTG  1031

seq1  TTCACCTTTCAATGATTTTATTAGTGTGGTCACAAGTTTGACACCTAC  1098
       ||||||||| ||||||||| ||||| |    | |||||||| |||||
seq2  -TCACCTTTC-ATGATTTTA-TAGTGGG---CCCAGTTTGAC-CCTAC  1072

seq1: chr7_125943571_125944641
seq2: B6Ng01-065E12.g_68_1135 (reverse)

seq1  TCAGCATTGGGGAGGTAGAGGTGGAAGGATTAGAGGTTCCAAGTCATCCC  50
      ||||| || ||| ||||||||| ||||   |||| |||||||||||||||
seq2  TCAGCCTTTGGGGGGTAGAGGT-GAAGATATAGA-GTTCCAAGTCATCCC  48

seq1  TGGC-AACACACTGTGGCTCAAGCCACCCTGGGCTTCCTTTTATTTTGAA  99
      |||| ||||||||   |||||||||| ||||||||||| |||||||||||
seq2  TGGCAAACACACTTGTGCTCAAGCCA-CCTGGGCTTCCATTTATTTTGAA  97

seq1  AGAGAAGCAGAAAGCATTGCAGAACAGGCTCTTCCCTGAGCACACGGGTC  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAG-AGCAGAAAGCATTGCAGAACAGGCTCTTCCCTGAGCACACGGGTC  146

seq1  GACCTACTTAATCATCATGGGAC-ACTGCCACTGGGGAGAAGGGGCTGAG  198
      ||||||||| ||||||||||||| ||||||||| ||||||||||||||||
seq2  GACCTACTTTATCATCATGGGACAACTGCCACT-GGGAGAAGGGGCTGAG  195

seq1  G-CCAAGACACAGTCCCCACTGAAGGACGGGGTAGAGAAGGACAAGCGAC  247
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGACACAGTCCCCACTGAAGGACGGGGTAGAGAAGGACAAGCGAC  245

seq1  TGAGGCAGGGTCTAACCACAGCTGTTTCCTTCCTTAAACAACCCGGGCTG  297
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAGGCAGGGTCTAACCACAGCTGTTTCC-TCCTTAAACAACCCGGGCTG  294

seq1  CTGTGATTGTGGTGGGGAGTGCTGAAGGAGGGCAGTCGTTTTGAGCACAG  347
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTGTGATTGTGGTGGGGAGTGCTGAAGGGAGGCAGTCGTTTTGAGCACAG  344

seq1  AGGTTTATTAAGCAACGTGTGTTCTATTTCACAGCTCCAGTCAATCATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTAAGCAACGTGTGTTCTATTTCACAGCTCCAGTCAATCATTC  394

seq1  AGAAAGTCATCGCCCACTTCCACGATTTCTCAGTTCTTTTCTCAGTGGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCATCGCCCACTTCCACGATTTCTCAGTTCTTTTCTCAGTGGTG  444

seq1  AGTAGCATCTCTCAATGACCTTTGGAGACACGTGTCTTCGGTCGCAGTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATCTCTCAATGACCTTTGGAGACACGTGTCTTCGGTCGCAGTCA  494

seq1  TATTTTCCTGTTACCCAGGCCTTTGTAAAAGCGGGCCCTATCCGCTTAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTGTTACCCAGGCCTTTGTAAAAGCGGGCCCTATCCGCTTAAC  544

seq1  AAGTGGCTATACTCCAGTGATAGAAGCACCACTAGGAGATACAGTACACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTATACTCCAGTGATAGAAGCACCACTAGGAGATACAGTACACA  594

seq1  CAGACTGAAAGAAAAATGCTACTTCTGTGTATTCTCTTCCTCATCAGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAAAGAAAAATGCTACTTCTGTGTATTCTCTTCCTCATCAGAGG  644

seq1  GGTGTGCACCGCACATGCTGCACATTGAGCCCCCAGTATCCAGATGCTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCACCGCACATGCTGCACATTGAGCCCCCAGTATCCAGATGCTCA  694

seq1  GGGCGAGAAGGATTTCACACTTGGTGTTTTGTTGTTAGATTTGGGGACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGAAGGATTTCACACTTGGTGTTTTGTTGTTAGATTTGGGGACAT  744

seq1  TCATAGGACCCAAATCTAAGCGTAGAATTCACTCGTGTTTCATATACACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGACCCAAATCTAAGCGTAGAATTCACTCGTGTTTCATATACACC  794

seq1  TTTCCACAGAGCCAGAGTTTCATACAGCAGTTTTATGATTCTGTACAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAGAGCCAGAGTTTCATACAGCAGTTTTATGATTCTGTACAGGA  844

seq1  GACTAACGGTACAAGCTCAGGGACGTGCCTGACATGTTCTGTGCCCACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACGGTACAAGCTCAGGGACGTGCCTGACATGTTCTGTGCCCACAC  894

seq1  TGCCAAACCGTGCAGCAACAATGACGCGGAATGTCATGATAGGAACTTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAACCGTGCAGCAACAATGACGCGGAATGTCATGATAGGAACTTGA  944

seq1  GGCATTCTGAAAATTATGGAATTGGGAACATCTAAAATTTCAGATTTTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCTGAAAATTATGGAATTGGGAACATCTAAAATTTCAGATTTTGG  994

seq1  ACTAAGGGTGTTTAATCCGTAATCATTAAAAAACAAAACAAAACAAAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGTGTTTAATCCGTAATCATTAAAAAACAAAACAAAACAAAACA  1044

seq1  ACAACAACAACAACAAAAGAATTC  1071
      ||||||||||||||||||||||||
seq2  ACAACAACAACAACAAAAGAATTC  1068