BAC Information

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BAC

Clone NameB6Ng01-066E03
Chromosome7 (Build37)
Map Location 50,696,537 - 50,846,512
singlet/doubletdoublet
Overlap geneCldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719
Upstream gene4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7
Downstream gene4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066E03.bB6Ng01-066E03.g
ACCDH885485DH885486
length942387
definitionDH885485|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E03, 5' end.DH885486|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,845,911 - 50,846,512)(50,696,537 - 50,696,929)
sequence
gaattctgcaggaaacccttttcacctttgttacggacgaaaggtttccc
cctactgtgaattttacaatgtctgtagaaagaagacttatcactgaagg
ccttcccacattcagcacacacatatggtttctcgcctgtgtgaatccgt
tgatgctctttgagattggcttttgaagacattgctttcccacagtcact
gcatatgtaaggcttctctccagtgtgaattctctgatgtgtgctgagaa
ctgacctatcattgaaagcctttccacactcagaacacacgaaaggtttc
tccccagtgtgaattcgatgatgcaccttcaggtgagatgctctccggaa
tgacttcccacagtcagaacatttgtaaggcttctccccagtatgagttt
gctgatgcatttgtaggtgagagtttcttctgaatgactttccgcagtca
tcacatttgtaaggtctctcaccagtgtgaatgcgatgatgcacgtgtag
gtgcgacttcacactgtatgatttcccacagtcatggcatttgtaaggct
tctcccctgtgtgaaatcgacagtgcttcttcagatctgaagcataaaga
aacaacttcccacagtcactacatgggtaacatttctctccactgtgaat
tctctgatgtgtggtgaggactgacttttggctgaaggccattccacagt
cagaacatacaaaagatctacgatcagtgtgaatttgatggtgtaccttc
aattgggatattttcctgaatgattctccacagtgaaagcatttgtaagg
tccttcactggtgtgaattcgatggtgtgcaagcaggttagatttaatac
tgaaagatttcccacagtcagggcactcataagcttttcccctgtgtgaa
tcgacaatgttttgttagatctgatgcacaaacaaacatttt
actatgtaagtgaaaaatgaccttgaacttctaatccttctgcccctatc
tcccaagtgctgggatgacacgtgtgccccaccatgacggttttatatta
aactaaggaatgtgcccagggccgtgtgcatgctgggcaatcactctact
actaagctaccttccttgctcctcttttattttgtattgttttgcttgtt
ttaattgagataggctctcacactgtagtctgcctggcccagaactcatt
acattactcatggcctgcccttgggcttgtgatgtcttgcctcagcctca
ctgaggctaggatcccaggcaagtggctgctgttggggacgttgaggttg
ccaggcaagagtgcttggggggcggggggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50845911_50846512
seq2: B6Ng01-066E03.b_44_645 (reverse)

seq1  TTTCTTTATGCTTCAGATCTGAAGAAGCACTGTCGATTTCACACAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATGCTTCAGATCTGAAGAAGCACTGTCGATTTCACACAGGGGA  50

seq1  GAAGCCTTACAAATGCCATGACTGTGGGAAATCATACAGTGTGAAGTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTACAAATGCCATGACTGTGGGAAATCATACAGTGTGAAGTCGC  100

seq1  ACCTACACGTGCATCATCGCATTCACACTGGTGAGAGACCTTACAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACGTGCATCATCGCATTCACACTGGTGAGAGACCTTACAAATGT  150

seq1  GATGACTGCGGAAAGTCATTCAGAAGAAACTCTCACCTACAAATGCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGCGGAAAGTCATTCAGAAGAAACTCTCACCTACAAATGCATCA  200

seq1  GCAAACTCATACTGGGGAGAAGCCTTACAAATGTTCTGACTGTGGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCATACTGGGGAGAAGCCTTACAAATGTTCTGACTGTGGGAAGT  250

seq1  CATTCCGGAGAGCATCTCACCTGAAGGTGCATCATCGAATTCACACTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCGGAGAGCATCTCACCTGAAGGTGCATCATCGAATTCACACTGGG  300

seq1  GAGAAACCTTTCGTGTGTTCTGAGTGTGGAAAGGCTTTCAATGATAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCTTTCGTGTGTTCTGAGTGTGGAAAGGCTTTCAATGATAGGTC  350

seq1  AGTTCTCAGCACACATCAGAGAATTCACACTGGAGAGAAGCCTTACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGCACACATCAGAGAATTCACACTGGAGAGAAGCCTTACATAT  400

seq1  GCAGTGACTGTGGGAAAGCAATGTCTTCAAAAGCCAATCTCAAAGAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACTGTGGGAAAGCAATGTCTTCAAAAGCCAATCTCAAAGAGCAT  450

seq1  CAACGGATTCACACAGGCGAGAAACCATATGTGTGTGCTGAATGTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGATTCACACAGGCGAGAAACCATATGTGTGTGCTGAATGTGGGAA  500

seq1  GGCCTTCAGTGATAAGTCTTCTTTCTACAGACATTGTAAAATTCACAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAGTGATAAGTCTTCTTTCTACAGACATTGTAAAATTCACAGTA  550

seq1  GGGGGAAACCTTTCGTCCGTAACAAAGGTGAAAAGGGTTTCCTGCAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAACCTTTCGTCCGTAACAAAGGTGAAAAGGGTTTCCTGCAGAAT  600

seq1  TC  602
      ||
seq2  TC  602

seq1: chr7_50696537_50696929
seq2: B6Ng01-066E03.g_66_458

seq1  GAATTCACTATGTAAGTGAAAAATGACCTTGAACTTCTAATCCTTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAAGTGAAAAATGACCTTGAACTTCTAATCCTTCTGCC  50

seq1  CCTATCTCCCAAGTGCTGGGATGACACGTGTGCCCCACCATGACGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCCCAAGTGCTGGGATGACACGTGTGCCCCACCATGACGGTTTT  100

seq1  ATATTAAACTAAGGAATGTGCCCAGGGCCGTGTGCATGCTGGGCAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAACTAAGGAATGTGCCCAGGGCCGTGTGCATGCTGGGCAATCAC  150

seq1  TCTACTACTAAGCTACCTTCCTTGCTCCTCTTTTATTTTGTATTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACTAAGCTACCTTCCTTGCTCCTCTTTTATTTTGTATTGTTTTG  200

seq1  CTTGTTTTAATTGAGATAGGCTCTCACACTGTAGTCTGCCTGGCCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTAATTGAGATAGGCTCTCACACTGTAGTCTGCCTGGCCCAGAA  250

seq1  CTCATTACATTACTCATGGCCTGCCCTTGGGCTTGTGATGTCTTGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACATTACTCATGGCCTGCCCTTGGGCTTGTGATGTCTTGCCTCA  300

seq1  GCCTCACTGAGGCTAGGATCCCAGGCAAGTGGCTGCTGTTGGGGACGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTGAGGCTAGGATCCCAGGCAAGTGGCTGCTGTTGGGGACGTTG  350

seq1  AGGTTGCCAGGCAAGAGTGCTTGGGGGGCGGGGGGTGGGGGGG  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCCAGGCAAGAGTGCTTGGGGGGCGGGGGGTGGGGGGG  393