BAC Information

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BAC

Clone NameB6Ng01-066G09
Chromosome7 (Build37)
Map Location 6,754,561 - 6,767,005
singlet/doubletdoublet
Overlap geneUsp29
Upstream geneV1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066G09.bB6Ng01-066G09.g
ACCDH885589DH885590
length2721,050
definitionDH885589|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G09, 5' end.DH885590|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,766,734 - 6,767,005)(6,754,561 - 6,755,619)
sequence
ataaaagagaaaatgtatgacttttgagaaataggagcagattttctaac
ctacttatctttttatgtacatttctattcataaggtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgttagcccatgcatgtgt
atgccacgtgtaaaggacagaggaaagctttcatggagttggtcctctca
ttccacatgcacttggttctggaacctgagttcaggttgtcaagcttaca
tcatagagggttaaggccttga
gaattccagccttggagttgcaagcaagagatccctgaagcaagatgact
agctagaagagccgtgctggcgggctctgagtttgcttgccagaccctgt
cttgatgagaaagttgtcagagcaatggaggattgctgacatcaatctca
gacatctggatgtacatgtgcacccacgtatgtgtgccgacatacaagca
acaagcaacaaaatcgtgcacctacacacacacacacacacacacacaca
cacacacacacacacacaccacaccacacacccatgaatgggaaagggga
gggaggtgaaggtagctataaaccagggatagtttgatggaggagaccca
tgaaggaataattgagggtcagactatagcttctgtttgtggatcaatat
ttccaatgggaacattgataagatagacctgagaagaggtagaaacgggt
ccacaagtaaaactctattggactacaattctgaccactcccaatatact
ctccctgattgctttcatgctatagtgacagagttcaataactgagttcc
aaccacacagcccaccaaaactaaaatattcactatgtggcttttgacaa
aaagccattccaggctgcagagtcaaacagtttataaacctgcacagatc
tagcttccagggaaatgccacagagtccaatatagctgctaccccaaatt
cctctaaagagaaaacataggaacacccatttttgaaactcacatagcct
aaactttgactattttttaatttatcataaccagaaaactatatacaatt
acagtgcgcaacatgatgttcaaattacatatattctttgtgtgagtatc
ttctcagtcagattggcttacctatccattatgcatccatcatttttttt
ttaagaactttcagcaattttctgttgttgctgtcttttttttttttttt
ttttgcgatagggtaatttggttcccgtggagctctggctttcctggaac
tccttttaacaacagactggcttgacttcagaagcgccagcctctgtctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6766734_6767005
seq2: B6Ng01-066G09.b_53_324 (reverse)

seq1  TCAAGGCCTTAACCCTCTATGATGTAAGCTTGACAACCTGAACTCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCTTAACCCTCTATGATGTAAGCTTGACAACCTGAACTCAGGTT  50

seq1  CCAGAACCAAGTGCATGTGGAATGAGAGGACCAACTCCATGAAAGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCAAGTGCATGTGGAATGAGAGGACCAACTCCATGAAAGCTTTC  100

seq1  CTCTGTCCTTTACACGTGGCATACACATGCATGGGCTAACACCACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTTTACACGTGGCATACACATGCATGGGCTAACACCACACACA  150

seq1  CACACACACACACACACACACACACACACACACACACCTTATGAATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACCTTATGAATAGAA  200

seq1  ATGTACATAAAAAGATAAGTAGGTTAGAAAATCTGCTCCTATTTCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATAAAAAGATAAGTAGGTTAGAAAATCTGCTCCTATTTCTCAAA  250

seq1  AGTCATACATTTTCTCTTTTAT  272
      ||||||||||||||||||||||
seq2  AGTCATACATTTTCTCTTTTAT  272

seq1: chr7_6754561_6755619
seq2: B6Ng01-066G09.g_66_1115

seq1  GAATTCCAGCCTTGGAGTTGCAAGCAAGAGATCCCTGAAGCAAGATGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTTGGAGTTGCAAGCAAGAGATCCCTGAAGCAAGATGACT  50

seq1  AGCTAGAAGAGCCGTGCTGGCGGGCTCTGAGTTTGCTTGCCAGACCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAAGAGCCGTGCTGGCGGGCTCTGAGTTTGCTTGCCAGACCCTGT  100

seq1  CTTGATGAGAAAGTTGTCAGAGCAATGGAGGATTGCTGACATCAATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGAGAAAGTTGTCAGAGCAATGGAGGATTGCTGACATCAATCTCA  150

seq1  GACATCTGGATGTACATGTGCACCCACGTATGTGTGCCGACATACAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGGATGTACATGTGCACCCACGTATGTGTGCCGACATACAAGCA  200

seq1  ACAAGCAACAAAATCGTGCACCTACACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAACAAAATCGTGCACCTACACACACACACACACACACACACACA  250

seq1  CACACACACACACACACACCACACCACACACCCATGAATGGGAAAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCACACCACACACCCATGAATGGGAAAGGGGA  300

seq1  GGGAGGTGAAGGTAGCTATAAACCAGGGATAGTTTGATGGAGGAGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGAAGGTAGCTATAAACCAGGGATAGTTTGATGGAGGAGACCCA  350

seq1  TGAAGGAATAATTGAGGGTCAGACTATAGCTTCTGTTTGTGGATCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAATAATTGAGGGTCAGACTATAGCTTCTGTTTGTGGATCAATAT  400

seq1  TTCCAATGGGAACATTGATAAGATAGACCTGAGAAGAGGTAGAAACGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGGGAACATTGATAAGATAGACCTGAGAAGAGGTAGAAACGGGT  450

seq1  CCACAAGTAAAACTCTATTGGACTACAATTCTGACCACTCCCAATATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGTAAAACTCTATTGGACTACAATTCTGACCACTCCCAATATACT  500

seq1  CTCCCTGATTGCTTTCATGCTATAGTGACAGAGTTCAATAACTGAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGATTGCTTTCATGCTATAGTGACAGAGTTCAATAACTGAGTTCC  550

seq1  AACCACACAGCCCACCAAAACTAAAATATTCACTATGTGGCTTTTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACAGCCCACCAAAACTAAAATATTCACTATGTGGCTTTTGACAA  600

seq1  AAAGCCATTCCAGGCTGCAGAGTCAAACAGTTTATAAACCTGCACAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTCCAGGCTGCAGAGTCAAACAGTTTATAAACCTGCACAGATC  650

seq1  TAGCTTCCAGGGAAATGCCACAGAGTCCAATATAGCTGCTACCCCAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCAGGGAAATGCCACAGAGTCCAATATAGCTGCTACCCCAAATT  700

seq1  CCTCTAAAGAGAAAACATAGGAACACCCATTTTTGAAACTCACATAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAGAGAAAACATAGGAACACCCATTTTTGAAACTCACATAGCCT  750

seq1  AAACTTTGACTA-TTTTTAATTTATCATAACCAGAAAACTATATACAATT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGACTATTTTTTAATTTATCATAACCAGAAAACTATATACAATT  800

seq1  ACAGTGCGCAACATGATGTTCAAATTACATATATTCTTTGTGTGAGTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCGCAACATGATGTTCAAATTACATATATTCTTTGTGTGAGTATC  850

seq1  TTCTCAGTCAGATTGGCTTACCTATCCATTATGCATCCATCATTTTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCAGATTGGCTTACCTATCCATTATGCATCCATCATTTTTTTT  900

seq1  TTAAGAACTTTCAGCAATTTTCTGTTGTTGCTGTCTTTTTTTTTTTTTTT  949
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTAAGAACTTTCAGCAATTTTCTGTTGTTGCTGTC--TTTTTTTTTTTTT  948

seq1  TTTTTTGCGATAGGGTTATTTTGTTCTCTGTGTAGCTCTGGCTGTCCTGG  999
      |||||||||||||||| |||| |||| | ||| |||||||||| ||||||
seq2  TTTTTTGCGATAGGGTAATTTGGTTC-CCGTGGAGCTCTGGCTTTCCTGG  997

seq1  AACTCGCTTTGTAGACTACCAGACTGGCTTTGATCTCAGAGAGCTGCCAG  1049
      ||||| |||| || || | ||||||||| ||||  ||||| ||| |||||
seq2  AACTC-CTTT-TA-AC-AACAGACTGGC-TTGACTTCAGA-AGC-GCCAG  1040

seq1  CCTCTGTCTC  1059
      ||||||||||
seq2  CCTCTGTCTC  1050