BAC Information

Click to search

BAC

Clone NameB6Ng01-066J17
Chromosome7 (Build37)X (Build37)
Map Location 24,141,331 - 24,141,85051,202,928 - 51,203,066
singlet/doubletsingletsinglet
Overlap geneNlrp4e
Upstream geneLOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664
Downstream geneLOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J17.bB6Ng01-066J17.g
ACCDH885739DH885740
length1,055924
definitionDH885739|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J17, 5' end.DH885740|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,141,331 - 24,141,850)(51,202,928 - 51,203,066)
sequence
gaattcatttctaacttgaattttaaaaatattttatggtgtcccttccc
caaacaccaatcacctaacgtagcccctcagtgagaggtggggtttcatg
ataagatatgcttactggtatagcattggcaggattattattggtgtgat
catcttattattgaattactagcattttgggtgtgtgtgtataagtaggc
agaggccagaggccaacctcaggtattgccagggcactctggtggagtca
gcttgtgaggcagaaatgccaaaaagctgctcatgagaaatgaatttcta
ggactctcctcctggatgtctggcgaaagtcagctctccagtttgggtca
gtttgacaggcgaaaagcctggaagctgtttcatgaggataagagttcca
tggaaatttctctcctggagttatggcattttttcccttacccatattaa
tcaaatttccatcacgttagtctaatgtatagattcacgtgcactctatt
aagcattaccttatagtaaatgccttttaagattgtattctaacatagct
aaagccttttcccagtgttcttagattccagatagcagcaaggagcttaa
cccattcagtaactaattaagcactagccattaattcagttgtctgcaga
aagagtctaaaattctcactgagatagaaatttgtattacagagtatatt
ccatgccaagagcaattagtatactatactaaaaatggatagtctccaga
tatagataagaattaacgaggcctagagaattttggggtcagtgacacta
cattattcttgaggcgtgtcaagagttaactaccctggggctattaactc
taagtgtaaaactcttgcctggcagaaagtgctaatctctaatgtaaaca
tttacctggtccctacaaattccctttgtagtcactccccttgcatctgt
gctaatctctagtgttaaacattatctggttccttttgaagtcactcctt
ttgcacctggaaaattcatggtgccttattctgttatgatttgcaattta
ttttg
gaattctcacctgaggaataccgaatgacagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaattaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgagaatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggttgtttctca
gaaaagtgaacatggtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatattccaactagtaagaaagaaacatgctccactct
gttcatagcagccttatttataatagccagaagatggaaagaacccagat
gcccctcagcagagaatggataccgaaaatgcggtatatttacagaatgg
agtactactcagctattaaacagaatgctttcatgaaattcctaggcaaa
tgaatggacctggagggcatcatcctgagtgaggtaactcaatcacaaaa
gaactcacatgatatgtactcactgataagtggatattagtccagaagct
agaatactcaagatacaagattcaaagaacatgaaactcaagaagaacga
aaatcaaagtgtggacactttgcccattctcagaattgggaacaaacacc
catggaaggagttacaaatcaagtttggagctgagacaaaaggatggact
atctagagattaccatatccggaatccatcccataatcagcttccaaaca
ctgacaccattgcatcactagaagatttgctgaaagacctgatatagttg
ctcttgtgaactattcagggctagcaccgagaatgatgctcacagtagct
atggaggatcatggctccatggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24141331_24141850
seq2: B6Ng01-066J17.b_44_563 (reverse)

seq1  TTTACTATAAGGTAATGCTTAATAGAGTGCACGTGAATCTATACATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATAAGGTAATGCTTAATAGAGTGCACGTGAATCTATACATTAGA  50

seq1  CTAACGTGATGGAAATTTGATTAATATGGGTAAGGGAAAAAATGCCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGTGATGGAAATTTGATTAATATGGGTAAGGGAAAAAATGCCATAA  100

seq1  CTCCAGGAGAGAAATTTCCATGGAACTCTTATCCTCATGAAACAGCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAGAGAAATTTCCATGGAACTCTTATCCTCATGAAACAGCTTCC  150

seq1  AGGCTTTTCGCCTGTCAAACTGACCCAAACTGGAGAGCTGACTTTCGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTCGCCTGTCAAACTGACCCAAACTGGAGAGCTGACTTTCGCCA  200

seq1  GACATCCAGGAGGAGAGTCCTAGAAATTCATTTCTCATGAGCAGCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAGGAGGAGAGTCCTAGAAATTCATTTCTCATGAGCAGCTTTTT  250

seq1  GGCATTTCTGCCTCACAAGCTGACTCCACCAGAGTGCCCTGGCAATACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCTGCCTCACAAGCTGACTCCACCAGAGTGCCCTGGCAATACCT  300

seq1  GAGGTTGGCCTCTGGCCTCTGCCTACTTATACACACACACCCAAAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGCCTCTGGCCTCTGCCTACTTATACACACACACCCAAAATGCT  350

seq1  AGTAATTCAATAATAAGATGATCACACCAATAATAATCCTGCCAATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCAATAATAAGATGATCACACCAATAATAATCCTGCCAATGCTA  400

seq1  TACCAGTAAGCATATCTTATCATGAAACCCCACCTCTCACTGAGGGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTAAGCATATCTTATCATGAAACCCCACCTCTCACTGAGGGGCTA  450

seq1  CGTTAGGTGATTGGTGTTTGGGGAAGGGACACCATAAAATATTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGGTGATTGGTGTTTGGGGAAGGGACACCATAAAATATTTTTAAAA  500

seq1  TTCAAGTTAGAAATGAATTC  520
      ||||||||||||||||||||
seq2  TTCAAGTTAGAAATGAATTC  520

seq1: chrX_51202928_51203066
seq2: B6Ng01-066J17.g_871_989 (reverse)

seq1  CTCCATTGGGAGCCCGGTGATCCATCCATTAGCTGACTGTGAGCATCCAC  50
      ||||||  ||||||   |||||| |||| ||||| ||||||||||||   
seq2  CTCCAT--GGAGCC--ATGATCC-TCCA-TAGCT-ACTGTGAGCATC--A  41

seq1  TTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCT  100
      ||||  |  ||||||  ||| | ||||| ||||||||| || ||| ||| 
seq2  TTCTCGG--TGCTAG--CCCTGAATAGT-TCACAAGAG-CAACTATATCA  85

seq1  GGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGT  139
      ||   ||||| |  ||||||| |||||| ||||||||||
seq2  GG--TCTTTC-AGCAAATCTT-CTAGTG-ATGCAATGGT  119