BAC Information

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BAC

Clone NameB6Ng01-066L23
Chromosome15 (Build37)7 (Build37)
Map Location 44,045,594 - 44,046,72633,220,576 - 33,221,099
singlet/doubletsingletsinglet
Overlap geneTrhr
Upstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
Downstream geneLOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066L23.bB6Ng01-066L23.g
ACCDH885839DH885840
length1,133939
definitionDH885839|Mus musculus domesticus DNA, BAC clone: B6Ng01-066L23, 5' end.DH885840|Mus musculus domesticus DNA, BAC clone: B6Ng01-066L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,045,594 - 44,046,726)(33,220,576 - 33,221,099)
sequence
gaattcaagtgacgcacagagagagaatgacttctggctcatttctctag
tgtgttcactgcttgctatgaggtaaacacacagaatatgcttgtctgtg
aacaaggagtgaagtgctcttgaagcgaactcgctttattaagagcattt
acgtatcatggcgccacatacctttgagatgaagtcagcagcaaagtcaa
gaactgtgtgggcttttattccaagtctaatttattctaagtgtgtttcc
taaattcttcagaggcaaggagaaaaatccaaaacttctgtggtcaagag
aaaaccagctcaacaccagacatcctctggagaaaggagagtcctctctt
aagacaaggaagagggtgggggagtgtatttcttactgtgaggttttttt
gtttttgtttatttttttattttttaatttagagagggatttggccttta
ctgatttggaattagggcgtcaatggaacttttgagcaaataaagagtgc
tgggccctgtggtaatgcatacgatctgtttcactactattccttcatca
aacaggcttctccgtggtttccccttcaagatctttctccattcttcctc
ctgccgcatcttccctttgactcagttctttgtggagtttgcattcacaa
catttgggtatttctcagtgcttatctttacagttttctgaccttgactg
ctgaaatagtctcctcctggctttcctccttatactcagtactttctttt
ctctttatgatttttccatccctagaattctggttgtttaaggttccttt
cctataccccaacatttccactgtgatagagcatgttcttgggccatcat
cccatctacattctgctttctcagaactctgtattttataggataactgt
gactctgcatttgtggactctaccttatatgaaaggcaggtacaccccat
ttgaaatctgttgtcttctgtttactgtctattaactaaagcacattctt
aagggatagtgataattaatggtatttttgtttcacattccaaacattct
gacagtgattccatagacttgtacaaatcctattactttggaacaaaggt
attgctatttactctctcctggaccagatgtgc
gaattcctgatctttccaagactttttatcatgaatgggtgttgaatctt
gtcgaatgctttttccacatctaagcagatgatcatgtggtttctgtctt
tgagtttgtttatataatggattacattgatggatttttgtatattaaac
catccctgcatccctggaataaaacctacttggtcaggatggatgattgc
tttaatgtgttcttggatttggttagcgagaattttattgagtatttttg
catcgatattcataagggaaattggtctgaagttctctatctttgttgga
tctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagtt
gggtagaattccctctacttctattttgtggaatagtttgtgcagaactg
gaattagatcttctttgaaggtctgatagaactctgcactaaacccatct
ggtcctggcctttttttggctgggagactattaatgactgcttctatttc
tttagggaatatggtactgtttagatcgttaacttgatcctgatttaact
ttggtacctgatatctgtctagaaatttgtccatttcgtccaggttttcc
agttttgttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgtcgttatgtctcccttttcatttctgattttgttaa
ttaggatgttgtccctgtgccctctagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgacta
tttcctggaatccactcctcttgggtgaatttcttcctttttttctagag
ctttagatgtgttgtcagctgctagtatgtgctctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44045594_44046726
seq2: B6Ng01-066L23.b_49_1181 (reverse)

seq1  GCACATCT-GTCCAGGAGA-TGATAATGGCAATACCTTTGTTCAAAAGTA  48
      |||||||| ||||||||||  |  ||| ||||||||||||||| ||||||
seq2  GCACATCTGGTCCAGGAGAGAGTAAATAGCAATACCTTTGTTCCAAAGTA  50

seq1  ATTAGGATTAGTACAAAGTCTATGGAATCACTAGTCAGAATGTTTGGAAT  98
      | ||||||| |||| ||||||||||||||||| |||||||||||||||||
seq2  A-TAGGATTTGTAC-AAGTCTATGGAATCACT-GTCAGAATGTTTGGAAT  97

seq1  GTGGAAACAAAATAACCATTAATTATCACTATCCTTTAAGAATGTGCTTT  148
      || |||||||||  |||||||||||||||||||| |||||||||||||||
seq2  GT-GAAACAAAAATACCATTAATTATCACTATCCCTTAAGAATGTGCTTT  146

seq1  AGTTAATAGACAGTAAACAGAAGACAACAGATTTC-AATGGGGTGTACCT  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTAATAGACAGTAAACAGAAGACAACAGATTTCAAATGGGGTGTACCT  196

seq1  GCCTTTCATATTAGGTAGAGTCCACAAATGCAGAGTCACAGTTATCCTAT  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCATATAAGGTAGAGTCCACAAATGCAGAGTCACAGTTATCCTAT  246

seq1  -AAATACAGAGTTCTGAGAAAGCAGAATGTAGATGGGATGATGGCCCAAG  296
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAGAGTTCTGAGAAAGCAGAATGTAGATGGGATGATGGCCCAAG  296

seq1  AACATGCTCTATCACAGTGGAAATGTTGGGGTATAGGAAAGGAACCTTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTCTATCACAGTGGAAATGTTGGGGTATAGGAAAGGAACCTTAA  346

seq1  ACAACCAGAATTCTAGGGATGGAAAAATCATAAAGAGAAAAGAAAGTACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGAATTCTAGGGATGGAAAAATCATAAAGAGAAAAGAAAGTACT  396

seq1  GAGTATAAGGAGGAAAGCCAGGAGGAGACTATTTCAGCAGTCAAGGTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAGGAGGAAAGCCAGGAGGAGACTATTTCAGCAGTCAAGGTCAG  446

seq1  AAAACTGTAAAGATAAGCACTGAGAAATACCCAAATGTTGTGAATGCAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTAAAGATAAGCACTGAGAAATACCCAAATGTTGTGAATGCAAA  496

seq1  CTCCACAAAGAACTGAGTCAAAGGGAAGATGCGGCAGGAGGAAGAATGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAAAGAACTGAGTCAAAGGGAAGATGCGGCAGGAGGAAGAATGGA  546

seq1  GAAAGATCTTGAAGGGGAAACCACGGAGAAGCCTGTTTGATGAAGGAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTTGAAGGGGAAACCACGGAGAAGCCTGTTTGATGAAGGAATA  596

seq1  GTAGTGAAACAGATCGTATGCATTACCACAGGGCCCAGCACTCTTTATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAAACAGATCGTATGCATTACCACAGGGCCCAGCACTCTTTATTT  646

seq1  GCTCAAAAGTTCCATTGACGCCCTAATTCCAAATCAGTAAAGGCCAAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAAGTTCCATTGACGCCCTAATTCCAAATCAGTAAAGGCCAAATC  696

seq1  CCTCTCTAAATTAAAAAATAAAAAAATAAACAAAAACAAAAAAACCTCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAAATTAAAAAATAAAAAAATAAACAAAAACAAAAAAACCTCAC  746

seq1  AGTAAGAAATACACTCCCCCACCCTCTTCCTTGTCTTAAGAGAGGACTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAATACACTCCCCCACCCTCTTCCTTGTCTTAAGAGAGGACTCT  796

seq1  CCTTTCTCCAGAGGATGTCTGGTGTTGAGCTGGTTTTCTCTTGACCACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCAGAGGATGTCTGGTGTTGAGCTGGTTTTCTCTTGACCACAG  846

seq1  AAGTTTTGGATTTTTCTCCTTGCCTCTGAAGAATTTAGGAAACACACTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGGATTTTTCTCCTTGCCTCTGAAGAATTTAGGAAACACACTTA  896

seq1  GAATAAATTAGACTTGGAATAAAAGCCCACACAGTTCTTGACTTTGCTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATTAGACTTGGAATAAAAGCCCACACAGTTCTTGACTTTGCTGC  946

seq1  TGACTTCATCTCAAAGGTATGTGGCGCCATGATACGTAAATGCTCTTAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATCTCAAAGGTATGTGGCGCCATGATACGTAAATGCTCTTAAT  996

seq1  AAAGCGAGTTCGCTTCAAGAGCACTTCACTCCTTGTTCACAGACAAGCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAGTTCGCTTCAAGAGCACTTCACTCCTTGTTCACAGACAAGCAT  1046

seq1  ATTCTGTGTGTTTACCTCATAGCAAGCAGTGAACACACTAGAGAAATGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTGTTTACCTCATAGCAAGCAGTGAACACACTAGAGAAATGAG  1096

seq1  CCAGAAGTCATTCTCTCTCTGTGCGTCACTTGAATTC  1133
      |||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCATTCTCTCTCTGTGCGTCACTTGAATTC  1133

seq1: chr7_33220576_33221099
seq2: B6Ng01-066L23.g_66_589 (reverse)

seq1  CTAAACATTCCCATATCCCCTAAAGAAATAGAATCAGTCATTAGTAGTCT  50
      ||||||| | |||||| |||||||||||||||| ||||||||| ||||||
seq2  CTAAACAGTACCATATTCCCTAAAGAAATAGAAGCAGTCATTAATAGTCT  50

seq1  CCCAGCCAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTAC  100
      ||||||| |||||||| |||||||||||||||||||||||||||||||| 
seq2  CCCAGCC-AAAAAAAGGCCAGGACCAGATGGGTTTAGTGCAGAGTTCTAT  99

seq1  CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCATAAAGTATTCCACAA  150
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAA  149

seq1  AATAGAAGTAGATGGAACTCTACCCAACTCATTCTATGAAGCCACAATTA  200
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  AATAGAAGTAGAGGGAATTCTACCCAACTCATTCTATGAAGCCACAATTA  199

seq1  CTCTGATACCTAAACCACAGAAAGATCCAAAAAAGATAGAGAACTTCAGA  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGA  249

seq1  CCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGC  300
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  CCAATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTCGC  299

seq1  TAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAG  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAG  349

seq1  GTTTTATTCCAGGGATGCAGGGATGGTTTAATATTCGGAAATCCATCAAC  400
      |||||||||||||||||||||||||||||||||| |  ||||||||||| 
seq2  GTTTTATTCCAGGGATGCAGGGATGGTTTAATATACAAAAATCCATCAAT  399

seq1  GTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTC  450
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GTAATCCATTATATAAACAAACTCAAAGACAGAAACCACATGATCATCTG  449

seq1  GTTAGATGCGGAAAAAGCATTCGACAAGATCCAACACCCATTCATGAT-A  499
       ||||||| ||||||||||||||||||||| ||||||||||||||||| |
seq2  CTTAGATGTGGAAAAAGCATTCGACAAGATTCAACACCCATTCATGATAA  499

seq1  AAAGTCTTGGAAAGATCAGGAATTC  524
      |||||||||||||||||||||||||
seq2  AAAGTCTTGGAAAGATCAGGAATTC  524