BAC Information

Click to search

BAC

Clone NameB6Ng01-067O09
Chromosome14 (Build37)7 (Build37)
Map Location 53,600,770 - 53,600,98796,682,498 - 96,683,591
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202
Downstream geneLOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067O09.bB6Ng01-067O09.g
ACCDH886644DH886645
length4791,092
definitionDH886644|Mus musculus domesticus DNA, BAC clone: B6Ng01-067O09, 5' end.DH886645|Mus musculus domesticus DNA, BAC clone: B6Ng01-067O09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,600,770 - 53,600,987)(96,682,498 - 96,683,591)
sequence
gaattcaaaggccacaattcaatttctttaagtttctgacattaggattt
tgctgctgttgttgttgttgttttggtttttcgagacagggtttctctgt
atagccctggctgttctggaactcactttgtagaccaggctggcctcaaa
ctcagaaatccgcctgcctctgcctcccaagtgctgggattaaaagtgtg
cgccaccactgctcggcacctgacattagttctttttcagtgatcttctg
ttcacagacttttaccttttctaacaccaccaaccccatggttctcccac
aggtgcctaaataattaacagtcttttagtcctacttaatcattcttctt
cttctccccctcctcctctccttcctccccctcgtcttcctctcctcctc
ctcctcttcctctcctcctcctcctcttcatcatctccgcctcctccttt
ccttctgtatgttttttctgtgtacttgt
gaattcctcctttacgttgactttcacaggtatttgttttactaatggac
agctgaattagcactgggatggccagctgacctgacaatagccctgccct
agaagaactcattgaccctgaaggagattgctgaattcatagttcccatg
cagctatgggtatcataagagggaagaaaagcataggctgatgggagcct
tggccacagagctatccccaaaattcttcagtggtaattggagattccat
gttcttgctgttgcctgaattcccagaatggtaccccctgactcccccaa
cctctcactggcaccaagcttcctttctctgaactctagcatggcctcct
ctttcagaactcaagacactagagactgtaggacaagcaagataaagatt
caggaatcaggagagggctatggtgccattcatggttcagaatacagact
ggataacaaagctccatggttctaattccagcatggctacttattaactt
caagaatgattatactaatcctccattatccgtgaggcattggctgcaag
accctcagggatgccaaaatcacagactcttaagtcctttatataaaatg
gcagatttccctatagtctatgcacatcctcctgaatctttaaaactctc
tctctcactcactcaactattcgtgagagttaatataataaaaatgctag
gtaaatagttgatatactggtttttgaggaaataacattcctcaaatgtt
atttgagaacatctgataataaaatacataataaatacacaaatacattt
taaaaacataaagaaaacatcttgacatattcaggacaaatgtgagtttt
aaaattttcctatgccctcttagctggaatggatttggaatgtacagata
tggaaagatggccatttgtcttgcacccaggagacgcacaggttaccata
gcacatgaaggtatcaatatctaggtggtggttacacaatgtttagttgt
tgctatttgtattttcagctgttccatggatgatcagaagtaggacgaat
tccattcctggaattttcaaaggtgggtgtcaagctctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53600770_53600987
seq2: B6Ng01-067O09.b_115_523

seq1  TTTTGGTGTTTTGAGACAGAGTTTCTCTGTATAGCCTTGGCTGTCCTGGA  50
      ||||||| ||| ||||||| |||||||||||||||| ||||||| |||||
seq2  TTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTTCTGGA  50

seq1  ACTCACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCTGCCTGCCTC  100
      ||||||| ||||||||||| ||||||  |||||||||||| |||||||||
seq2  ACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTC  100

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACTACTCC----CAAC  146
      |||||||||||||||||||||||| | ||| ||||| ||| |    || |
seq2  TGCCTCCCAAGTGCTGGGATTAAAAGTGTGCGCCACCACTGCTCGGCACC  150

seq1  AG-CTTTA-AACTTTTAAAGTTAAAGTAATGTATA-----ATATATATTT  189
       | | |||   |||||  || | |  |  |||  |      | ||  |||
seq2  TGACATTAGTTCTTTTTCAG-TGATCTTCTGTTCACAGACTTTTACCTTT  199

seq1  -------------GCCACATGGATTTTTTTCTGTGTACTTGT--------  218
                    || ||||| | |    | | || | |          
seq2  TCTAACACCACCAACCCCATGGTTCTCCCACAG-GTGCCTAAATAATTAA  248

seq1  --------------------------------------------------  218
                                                        
seq2  CAGTCTTTTAGTCCTACTTAATCATTCTTCTTCTTCTCCCCCTCCTCCTC  298

seq1  --------------------------------------------------  218
                                                        
seq2  TCCTTCCTCCCCCTCGTCTTCCTCTCCTCCTCCTCCTCTTCCTCTCCTCC  348

seq1  --------------------------------------------------  218
                                                        
seq2  TCCTCCTCTTCATCATCTCCGCCTCCTCCTTTCCTTCTGTATGTTTTTTC  398

seq1  -----------  218
                 
seq2  TGTGTACTTGT  409

seq1: chr7_96682498_96683591
seq2: B6Ng01-067O09.g_70_1161

seq1  GAATTCCTCCTTTACGTTGACTTTCACAGGTATTTGTTTTACTAATGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTTACGTTGACTTTCACAGGTATTTGTTTTACTAATGGAC  50

seq1  AGCTGAATTAGCACTGGGATGGCCAGCTGACCTGACAATAGCCCTGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATTAGCACTGGGATGGCCAGCTGACCTGACAATAGCCCTGCCCT  100

seq1  AGAAGAACTCATTGACCCTGAAGGAGATTGCTGAATTCATAGTTCCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACTCATTGACCCTGAAGGAGATTGCTGAATTCATAGTTCCCATG  150

seq1  CAGCTATGGGTATCATAAGAGGGAAGAAAAGCATAGGCTGATGGGAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGGGTATCATAAGAGGGAAGAAAAGCATAGGCTGATGGGAGCCT  200

seq1  TGGCCACAGAGCTATCCCCAAAATTCTTCAGTGGTAATTGGAGATTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAGAGCTATCCCCAAAATTCTTCAGTGGTAATTGGAGATTCCAT  250

seq1  GTTCTTGCTGTTGCCTGAATTCCCAGAATGGTACCCCCTGACTCCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCTGTTGCCTGAATTCCCAGAATGGTACCCCCTGACTCCCCCAA  300

seq1  CCTCTCACTGGCACCAAGCTTCCTTTCTCTGAACTCTAGCATGGCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTGGCACCAAGCTTCCTTTCTCTGAACTCTAGCATGGCCTCCT  350

seq1  CTTTCAGAACTCAAGACACTAGAGACTGTAGGACAAGCAAGATAAAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAACTCAAGACACTAGAGACTGTAGGACAAGCAAGATAAAGATT  400

seq1  CAGGAATCAGGAGAGGGCTATGGTGCCATTCATGGTTCAGAATACAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCAGGAGAGGGCTATGGTGCCATTCATGGTTCAGAATACAGACT  450

seq1  GGATAACAAAGCTCCATGGTTCTAATTCCAGCATGGCTACTTATTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACAAAGCTCCATGGTTCTAATTCCAGCATGGCTACTTATTAACTT  500

seq1  CAAGAATGATTATACTAATCCTCCATTATCCGTGAGGCATTGGCTGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGATTATACTAATCCTCCATTATCCGTGAGGCATTGGCTGCAAG  550

seq1  ACCCTCAGGGATGCCAAAATCACAGACACTTAAGTCCTTTATATAAAATG  600
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCCTCAGGGATGCCAAAATCACAGACTCTTAAGTCCTTTATATAAAATG  600

seq1  GCAGATTTCCCTATAGTCTATGCACATCCTCCTGAATCTTTAAAACTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCCCTATAGTCTATGCACATCCTCCTGAATCTTTAAAACTCTC  650

seq1  TCTCTCACTCACTCAACTATTCGTGAGAGTTAATATAATAAAAATGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTCACTCAACTATTCGTGAGAGTTAATATAATAAAAATGCTAG  700

seq1  GTAAATAGTTGATATACTGG-TTTTGAGGAAATAACATTCCTCAAATGTT  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTAAATAGTTGATATACTGGTTTTTGAGGAAATAACATTCCTCAAATGTT  750

seq1  ATTTGAGAACATCTGATAATAAAATACATAATAAATACACAAATACATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAACATCTGATAATAAAATACATAATAAATACACAAATACATTT  800

seq1  TAAAAACATAAAGAAAACATCTTGACATTATTCAGGACAAATGTGAGTTT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAAAAACATAAAGAAAACATCTTGACA-TATTCAGGACAAATGTGAGTTT  849

seq1  TAAAATTTTCCTATGCCCTCTTAGCTGGATTGGATTTGGAATGTACAGAT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAAATTTTCCTATGCCCTCTTAGCTGGAATGGATTTGGAATGTACAGAT  899

seq1  ATGGAAGGATGGCCATTTGTCTTGCACCCAGGAGACGCACA-GTTACCAT  948
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGAAAGATGGCCATTTGTCTTGCACCCAGGAGACGCACAGGTTACCAT  949

seq1  AGCACATGAAGGTATCAATATCTAGGTGGTGGTTACAACAATGTTTAGTT  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCACATGAAGGTATCAATATCTAGGTGGTGGTTAC-ACAATGTTTAGTT  998

seq1  GTTGCTATTTGTATTTTCAGCTG-TCCATTGATTGATCAGAAGTA-GACG  1046
      ||||||||||||||||||||||| ||||| || |||||||||||| ||||
seq2  GTTGCTATTTGTATTTTCAGCTGTTCCATGGA-TGATCAGAAGTAGGACG  1047

seq1  AATTCCATTCCTGGGAATGTCCAGACAGGGTGGTGTCCAGCTCTGTGG  1094
      |||||||||||||| | | ||   | |||  |||||| ||||||||||
seq2  AATTCCATTCCTGGAATTTTC---AAAGGTGGGTGTCAAGCTCTGTGG  1092