BAC Information

Click to search

BAC

Clone NameB6Ng01-067O15
Chromosome7 (Build37)
Map Location 12,415,599 - 12,507,111
singlet/doubletdoublet
Overlap geneEG628898, V1rg5, V1rg6, LOC665999
Upstream geneLOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
Downstream geneV1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067O15.bB6Ng01-067O15.g
ACCDH886656DH886657
length9741,113
definitionDH886656|Mus musculus domesticus DNA, BAC clone: B6Ng01-067O15, 5' end.DH886657|Mus musculus domesticus DNA, BAC clone: B6Ng01-067O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,506,136 - 12,507,111)(12,415,599 - 12,416,164)
sequence
gaattctgtgcaaatggaggtattgggttaggcttatgtttgttcctatc
tactagtaaaatttccactatacaggaaattaagaggtgtccatgtagaa
aggcttaaataatgacgggaataattttatgtctgcctgatgactcttcc
ccaaactaattatatactatcttgtacctatgcagtaggcagtccttgat
gccagcagaagcttcccaattttaaactactaccatgtgtgttgttgttt
tgcacattattgtaagtgctgcttggaaagcatgactggtttgttgtttt
gttttgttttgttttgtttgtcttttagaaaccctttgcattgttttgtt
tttctctgtaggatatgaatgttttgcctgagggataaatattgttagtg
gagttttctttggatttagccatgaaaccacatttggcaagtcttgaatg
tccatggcatctctggctagggcattgcttaacattgaacctttgtgcca
tatatgtttcttcactgagcactccaaaaacacaggggaaagggtccttc
caactcttcatatttgctttcttcaatatatctgtgtaatgttttatact
ccaagatttatacgccaagataatattatggtatagtgattggaaaagta
atttttcaatacttcaggtagatgggtacacacttgtcatgaaaataaca
attggtctgtttgtaaagaggccaggatataataaattttaagttgggta
ctcagatctgatcataatcacatgaaaaagtaagccgtttcaccatgtgt
tttcatggtgtacaacattagagtatctttctctttcatatcaagagaat
gaaacaacagactatagagagagatgtagtaggcactttggttctatttc
ttgtttttaagtgagactctaaaacatggccagttagtaagaacacctaa
aaatggaagcttcccactgctaca
gaattccatggtggtggtggatcccggggaaacctccttattggtgttcc
tccctgggccacggtttcccacgtggccagtgcgtgctgctgccgccgcc
aaagccggaagttctcagtccggtcctgcggctgcatgcggccagttttt
tttttaactatcactgacaaattctgtcctaacgtcagtccaagtccaca
gtcggcaccacacacacagtctgtcccatgatgaaaaccacaaacaaaaa
caagacagcaacacaaaaacaagacagcaagagagaataaaagacaccag
tatctaaacacactcgttactcacactgccagatgtaaaaccaaggcacg
aggtgggactcaaacccacaatctcgcaaccttaaaaccaaggcacgagg
tgagacttgaacccacgatctcagaaccctaaaatcaaggctcgaggtgg
gattcgaacccatgatctcgcaacccgaaaaccaagacacgaggtgggac
tcaaacccacgatctcacaaccctaaaaccaagcaaggcacgaggtggaa
ctcaaacccacgatctcggaaccggaaaaccaaggcacaaacaaattcat
aaaccaagacacaaattcacaaaccaagacacaaattcataatctcagac
ttgaaaaaccaagacacaaattcagcggtgccacacttagacaacagaca
acatgtaagacgcacacaaataaatgtacttccaagaggtcttttcgggg
tttcctgggtgtcacgcagatctcggtgggacctccaaatgaaagaacct
agtggggaaacccccactcaatttccgttcggtgcgcacccaagaatcat
gaacagacgaccattttgatgtaaaagcatgaggtagtttaatgacgggc
cgacacattatcttccataggagacagaggtggtcgaccacatgggtgga
gcataatggcggagcttcggttcgaaacgtatcttcacaccaggagacag
tgtttcgacgaaggtatgagtttttcattgttcttctccaatactggata
ggatattggtttagcactggacattgtcttccctcgggtgcttctttctg
gaataccatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12506136_12507111
seq2: B6Ng01-067O15.b_46_1019 (reverse)

seq1  TGTAGCAGTGAGAAGCCTCCATGTTTTAGGTGTTCCTACTACACATGACC  50
      |||||||||| ||||| ||||| |||||||||||| ||||| || || ||
seq2  TGTAGCAGTGGGAAGCTTCCAT-TTTTAGGTGTTCTTACTA-AC-TGGCC  47

seq1  ATGTTTTAGAGTCTCACTTAAAATACAAGAAATAGAACCAAAGTGCCCTA  100
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  ATGTTTTAGAGTCTCACTTAAAA-ACAAGAAATAGAACCAAAGTG-CCTA  95

seq1  CTACATCTCTCTCTATAGTCTGTTGTTTTCATTCTCTTGATATGAAAG-G  149
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  CTACATCTCTCTCTATAGTCTGTTG-TTTCATTCTCTTGATATGAAAGAG  144

seq1  AAAGATACTCTAATGTTGTACACCATGAAAACACATGGTG-AACGGCTTA  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAGATACTCTAATGTTGTACACCATGAAAACACATGGTGAAACGGCTTA  194

seq1  CTTTTTCATGTGATTATGATCAGATCTGAGTACCCAACTTAAAATTTATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATGTGATTATGATCAGATCTGAGTACCCAACTTAAAATTTATT  244

seq1  ATATCCTGGCCTCTTTACAAACAGACCAATTGTTATTTTCATGACAAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGGCCTCTTTACAAACAGACCAATTGTTATTTTCATGACAAGTG  294

seq1  TGTACCCATCTACCTGAAGTATTG-AAAATTAC-TTTCCAATCACTATAC  346
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TGTACCCATCTACCTGAAGTATTGAAAAATTACTTTTCCAATCACTATAC  344

seq1  CATAATATTATCTTGGCGTATAAATCTTGGAGTATAAAACATTACACAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTATCTTGGCGTATAAATCTTGGAGTATAAAACATTACACAGA  394

seq1  TATATTGAAGAAAGCAAATATGAAGAGTTGGAAGGACCCTTTCCCCTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGAAGAAAGCAAATATGAAGAGTTGGAAGGACCCTTTCCCCTGTG  444

seq1  TTTTTGGAGTGCTCAGTGAAGAAACATATATGGCACAAAGGTTCAATGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGTGCTCAGTGAAGAAACATATATGGCACAAAGGTTCAATGTT  494

seq1  AAGCAATGCCCTAGCCAGAGATGCCATGGACATTCAAGACTTGCCAAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGCCCTAGCCAGAGATGCCATGGACATTCAAGACTTGCCAAATG  544

seq1  TGGTTTCATGGCTAAATCCAAAGAAAACTCCACTAACAATATTTATCCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCATGGCTAAATCCAAAGAAAACTCCACTAACAATATTTATCCCT  594

seq1  CAGGCAAAACATTCATATCCTACAGAGAAAAACAAAACAATGCAAAGGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACATTCATATCCTACAGAGAAAAACAAAACAATGCAAAGGGT  644

seq1  TTCTAAAAGACAAACAAAACAAAACAAAACAAAACAACAAACCAGTCATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGACAAACAAAACAAAACAAAACAAAACAACAAACCAGTCATG  694

seq1  CTTTCCAAGCAGCACTTACAATAATGTGCAAAACAACAACACACATGGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAGCAGCACTTACAATAATGTGCAAAACAACAACACACATGGTA  744

seq1  GTAGTTTAAAATTGGGAAGCTTCTGCTGGCATCAAGGACTGCCTACTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTAAAATTGGGAAGCTTCTGCTGGCATCAAGGACTGCCTACTGCA  794

seq1  TAGGTACAAGATAGTATATAATTAGTTTGGGGAAGAGTCATCAGGCAGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACAAGATAGTATATAATTAGTTTGGGGAAGAGTCATCAGGCAGAC  844

seq1  ATAAAATTATTCCCGTCATTATTTAAGCCTTTCTACATGGACACCTCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATTCCCGTCATTATTTAAGCCTTTCTACATGGACACCTCTTA  894

seq1  ATTTCCTGTATAGTGGAAATTTTACTAGTAGATAGGAACAAACATAAGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTATAGTGGAAATTTTACTAGTAGATAGGAACAAACATAAGCC  944

seq1  TAACCCAATACCTCCATTTGCACAGAATTC  976
      ||||||||||||||||||||||||||||||
seq2  TAACCCAATACCTCCATTTGCACAGAATTC  974

seq1: chr7_12415599_12416164
seq2: B6Ng01-067O15.g_605_1182

seq1  AGGCACGAGGTGGAACTCAAACCCACGATCTCGGAACCGGAAAACCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGAGGTGGAACTCAAACCCACGATCTCGGAACCGGAAAACCAAGG  50

seq1  CACAAACAAATTCATAAACCAAGACACAAATTCACAAACCAAGACACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAAATTCATAAACCAAGACACAAATTCACAAACCAAGACACAAA  100

seq1  TTCATAATCTCAGACTTGAAAAACCAAGACACAAATTCAGCGGTGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATCTCAGACTTGAAAAACCAAGACACAAATTCAGCGGTGCCACA  150

seq1  CTTAGACAACAGACAACATGTAAGACGCACACAAATAAATGTACCTCCAA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAGACAACAGACAACATGTAAGACGCACACAAATAAATGTACTTCCAA  200

seq1  GAGGTC-TTTCGGGG-TTCCTGGGTGTCACGCAGATCTCGGTGGGACCTC  248
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTTTCGGGGTTTCCTGGGTGTCACGCAGATCTCGGTGGGACCTC  250

seq1  CAAATGAAAGAACCTAGTGGGGAAACCCCCACTCAATTTCCGTTCGGTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAGAACCTAGTGGGGAAACCCCCACTCAATTTCCGTTCGGTGC  300

seq1  GCACCCAAGAATCATGAACAGACGACCATCTTGATGTAAAAGCATGAGGT  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCACCCAAGAATCATGAACAGACGACCATTTTGATGTAAAAGCATGAGGT  350

seq1  AGTTTAATGACGGGCCGACACA-TATCTCCCATAGGAGACAGAGGT-GTC  396
      |||||||||||||||||||||| ||||| ||||||||||||||||| |||
seq2  AGTTTAATGACGGGCCGACACATTATCTTCCATAGGAGACAGAGGTGGTC  400

seq1  GACCACAT-GGTGGAGCCATAATGGCGGAGCTCCGGTTCGAAACGTATC-  444
      |||||||| ||||||| ||||||||||||||| |||||||||||||||| 
seq2  GACCACATGGGTGGAG-CATAATGGCGGAGCTTCGGTTCGAAACGTATCT  449

seq1  TCACA-CAGGAGACAGTGGTTTCGACGAAGTATTGAG-TTTTCAT--GTC  490
      ||||| ||||||||||| ||||||||||||   |||| |||||||   ||
seq2  TCACACCAGGAGACAGT-GTTTCGACGAAGGTATGAGTTTTTCATTGTTC  498

seq1  TTCTCCAATACTGGATAGGATA-TGGTTTAGCACTGAACATTTGTCT--C  537
      |||||||||||||||||||||| ||||||||||||| ||| ||||||  |
seq2  TTCTCCAATACTGGATAGGATATTGGTTTAGCACTGGACA-TTGTCTTCC  547

seq1  CTC-GGTGCTTCTTTCTGGAATA-CATGGAA  566
      ||| ||||||||||||||||||| |||||||
seq2  CTCGGGTGCTTCTTTCTGGAATACCATGGAA  578