BAC Information

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BAC

Clone NameB6Ng01-068H01
Chromosome7 (Build37)
Map Location 139,663,320 - 139,777,196
singlet/doubletdoublet
Overlap geneLOC100043683, Oat
Upstream geneHmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
Downstream geneNkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068H01.bB6Ng01-068H01.g
ACCDH887027DH887028
length824871
definitionDH887027|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H01, 5' end.DH887028|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,776,374 - 139,777,196)(139,663,320 - 139,664,189)
sequence
gaattcccatggaatttacacacaaggttgcccagtgaatgttgagtctc
tctctctctctttctttttctcgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgcactttgccttgatttgaaaattaaacac
atatgttatcatccaaactaaaaggattggctgactgggaagagaaaagt
cccataggagaattaaaagatttacccttatagatcccaagatgaggccc
accaccccacctccgcagttttgaaaacatactccttctgcgaatgactg
gagtttggttccttgcactggtatcaggtagctcacaagcttccaaaata
cccactctagggggatctgttgcttctatacatatgtgcacataccccct
ctacgcacccagaatactaatcgaaaatatataataaatctttcttttta
aaaaagactcatattttccaatttacagaatttaaaggtctcccgtgctt
cctctgacatcaatctttagacacttgggaagaactggaactatattttg
gtggactgcctgtccagcaactctgggccccttccgtgggttgaccacaa
ctttcctgtggaaagatcctagataagggcatggttagtggcccttggga
aacccaactctttgtagtgcctcacgagctatgtatactgcccgattcaa
tagatagaacacgagggatatagtggtataggctctctcatataactgcc
ttttccaatatataaaagagacctgtcttagtgacatatcggtatctgga
aaatcaacaggacggctgtgattc
gaattcaaaggtgaaatgactccccccagacagaccttgcctggtcttgt
ttcctccaatcaagttactgatggagattttttttaaaaataaaaataaa
aggagacaggccaagctgggacctcctcatgggtcagtctgggagcctcc
ctcgagggcagaaatcagaggtgggttggcctggaaaatggtacctcctg
tcctagcatctaagaaggtccagagctaagaggcgcaagcagcaagagaa
gtgtaccctacctcactcagggtgccaaagccactgagaaggagctcagg
gtacccacatatacctgaacaccgagcacacgggtatgagctacacagat
tcggtgtcaaacgcttgggggtacgtgtagaacaactgcagtgtagtcag
cccaaaatgcaaacctcgatcgttagcttctactttacctgacagccttc
ctcccacggtgctatagcaagcttagggtgaacttggtgccaaaaacgta
ctccttttctcacacaagagccaggttggaatgtagaaacgtaaaaatcc
agcaggcttctaagggtgactcctggtaccactagatagaagaatggggt
ttagattggagcagactggccctgtctctggcatgtgaccttagcagagc
actttttctatatccataagcttcttccatgctcttgggaggatcatttc
tttcaggacagacagaaacacagcccatgtcaccatgtggtacctactaa
taccaagtgactagtaatgagaagctgaaatacctttgtgcctcaaggtc
agtgttctctctagggcggtgttttgtgtatatacatgcaaacagggtat
tcttagaggtagtgtttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_139776374_139777196
seq2: B6Ng01-068H01.b_42_865 (reverse)

seq1  GAATCACAGCCGTACTCTTGCTTTCCAAGGTACCAATATACCACAAAGAC  50
      ||||||||||||| || ||| ||| | || |||| ||||  ||| |||||
seq2  GAATCACAGCCGTCCTGTTGATTTTCCAGATACCGATATGTCACTAAGAC  50

seq1  CTGTCTGCTTGAATAATGTGGAAAAAGGCAGCTATATGAGA-AGGCTATG  99
        |||| |||  || || | | ||||||||| ||||||||| || |||| 
seq2  AGGTCT-CTTTTAT-ATATTGGAAAAGGCAGTTATATGAGAGAGCCTATA  98

seq1  CCACTATATCCCTCGTGTTCTCTCTGCTGTTTCGTGCAGTCTACAGAGTT  149
      ||||||||||||||||||||| |||  ||  ||| ||||| |||| || |
seq2  CCACTATATCCCTCGTGTTCTATCTATTGAATCGGGCAGTATACATAGCT  148

seq1  CCTGTTGCACTTCACTGAGTTGGCTTTCCCAA-GGCCACTAACCATGCTC  198
      | ||  ||||| ||  ||||||| |||||||| ||||||||||||||| |
seq2  CGTGAGGCACTACAAAGAGTTGGGTTTCCCAAGGGCCACTAACCATGCCC  198

seq1  CTCT-TAGGATCTTTCCAAAGGAAAGTTGTGGTCAACCCAGGGAAGTGGC  247
       | | ||||||||||||| ||||||||||||||||||||| ||||| |||
seq2  TTATCTAGGATCTTTCCACAGGAAAGTTGTGGTCAACCCACGGAAGGGGC  248

seq1  CCAGAGTTGCTGGACAGACAGACCACCAAAATATAGTTCCAGTTCTTCCC  297
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  CCAGAGTTGCTGGACAGGCAGTCCACCAAAATATAGTTCCAGTTCTTCCC  298

seq1  AAGTGTCTAAAGACTGATGTCAGAGGAAGCACTGGAGACCTTTAAATTCT  347
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  AAGTGTCTAAAGATTGATGTCAGAGGAAGCACGGGAGACCTTTAAATTCT  348

seq1  GTAAATTGGAAAATCTGAGTCTTTTTTTAAAAGAAAGATTTATTTTATAT  397
      |||||||||||||| |||||||||||| |||||||||||||||| |||||
seq2  GTAAATTGGAAAATATGAGTCTTTTTTAAAAAGAAAGATTTATTATATAT  398

seq1  TTTCGATTAGGAGTCTGTGTCTGTAGAGGGGGTATGTGCACATATGTATA  447
      |||||||||| | |||| ||  ||||||||||||||||||||||||||||
seq2  TTTCGATTAGTATTCTGGGTGCGTAGAGGGGGTATGTGCACATATGTATA  448

seq1  GAAGCATTGGATCCCCCTAGAGTTGGTATTACTGATGCTTGTGAGCTACC  497
      ||||||   |||||||||||||| ||||||   || ||||||||||||||
seq2  GAAGCAACAGATCCCCCTAGAGTGGGTATTTTGGAAGCTTGTGAGCTACC  498

seq1  TGATACCAGTGCAAGGAACCAAACTCCAGTCCTTCGCAGAAGGAGTATGC  547
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TGATACCAGTGCAAGGAACCAAACTCCAGTCATTCGCAGAAGGAGTATGT  548

seq1  TCTCCTAACTGCTGAGCTGTTGTGCTGGGCCTCCTCTTGTGATCTTTAAG  597
      | ||  |||||| ||| ||  ||| |||||||| ||||| ||||| ||||
seq2  TTTCAAAACTGCGGAGGTGGGGTGGTGGGCCTCATCTTGGGATCTATAAG  598

seq1  GTTTTATCTTTTAATTCTCCTATGGGACTTTTCTCTTCCCAGCCAGCCAA  647
      | |  ||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTAAATCTTTTAATTCTCCTATGGGACTTTTCTCTTCCCAGTCAGCCAA  648

seq1  TCCTTTTAGTTTGGTAGATAACATATGTGCTTAATTTACAAATCAAGGCA  697
      ||||||||||||||  ||||||||||||| ||||||| ||||||||||||
seq2  TCCTTTTAGTTTGGATGATAACATATGTGTTTAATTTTCAAATCAAGGCA  698

seq1  AAGTGCACACACACACACACACACACACACACACACACACACACACACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACACACACACACACACACACACACACACACACACACACACACAC  748

seq1  ACACGAGAAAAAGAAAGAGAGAGAGAGAGACTCAACATTCACTGGGCAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGAAAAAGAAAGAGAGAGAGAGAGACTCAACATTCACTGGGCAAC  798

seq1  CTTGTGTGTAAATTCCATGGGAATTC  823
      ||||||||||||||||||||||||||
seq2  CTTGTGTGTAAATTCCATGGGAATTC  824

seq1: chr7_139663320_139664189
seq2: B6Ng01-068H01.g_67_937

seq1  GAATTCAAAGGTGAAATGACTCCCCCCAGACAGACCTTGCCTGGTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGTGAAATGACTCCCCCCAGACAGACCTTGCCTGGTCTTGT  50

seq1  TTCCTCCAATCAAGTTACTGATGGAGATTTTTTTTAAAAATAAAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAATCAAGTTACTGATGGAGATTTTTTTTAAAAATAAAAATAAA  100

seq1  AGGAGACAGGCCAAGCTGGGACCTCCTCATGGGTCAGTCTGGGAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAGGCCAAGCTGGGACCTCCTCATGGGTCAGTCTGGGAGCCTCC  150

seq1  CTCGAGGGCAGAAATCAGAGGTGGGTTGGCCTGGAAAATGGTACCTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGCAGAAATCAGAGGTGGGTTGGCCTGGAAAATGGTACCTCCTG  200

seq1  TCCTAGCATCTAAGAAGGTCCAGAGCTAAGAGGCGCAAGCAGCAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCATCTAAGAAGGTCCAGAGCTAAGAGGCGCAAGCAGCAAGAGAA  250

seq1  GTGTACCCTACCTCACTCAGGGTGCCAAAGCCACTGAGAAGGAGCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCCTACCTCACTCAGGGTGCCAAAGCCACTGAGAAGGAGCTCAGG  300

seq1  GTACCCACATATACCTGAACACCGAGCACACGGGTATGAGCTACACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACATATACCTGAACACCGAGCACACGGGTATGAGCTACACAGAT  350

seq1  TCGGTGTCAAACGCTTGGGGGTACGTGTAGAACAACTGCAGTGTAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTCAAACGCTTGGGGGTACGTGTAGAACAACTGCAGTGTAGTCAG  400

seq1  CCCAAAATGCAAACCTCGATCGTTAGCTTCTACTTTACCTGACAGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATGCAAACCTCGATCGTTAGCTTCTACTTTACCTGACAGCCTTC  450

seq1  CTCCCACGGTGCTATAGCAAGCTTAGGGTGAACTTGGTGCCAAAAACGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACGGTGCTATAGCAAGCTTAGGGTGAACTTGGTGCCAAAAACGTA  500

seq1  CTCCTTTTCTCACACAAGAGCCAGGTTGGAATGTAGAAACGTAAAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTCACACAAGAGCCAGGTTGGAATGTAGAAACGTAAAAATCC  550

seq1  AGCAGGCTTCTAAGGGTGACTCCTGGTACCACTAGATAGAAGAATGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTCTAAGGGTGACTCCTGGTACCACTAGATAGAAGAATGGGGT  600

seq1  TTAGATTGGAGCAGACTGGCCCTGTCTCTGGCATGTGACCTTAGCAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGGAGCAGACTGGCCCTGTCTCTGGCATGTGACCTTAGCAGAGC  650

seq1  ACTTTTTCTATATCCATAAGCTTCTTCCATGCTCTTGGGAGGATCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTATATCCATAAGCTTCTTCCATGCTCTTGGGAGGATCATTTC  700

seq1  -TTCAGGACAGACAGAAACACAGCCCATGTCACCATGTGGTACCTACTAA  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGACAGACAGAAACACAGCCCATGTCACCATGTGGTACCTACTAA  750

seq1  TACCAAGTGACTAGTAATGAGAAGCTGAAATACCTTTGTGCCTCAAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGTGACTAGTAATGAGAAGCTGAAATACCTTTGTGCCTCAAGGTC  800

seq1  AGTGTTCTCTCTAGGGCCGGTGTTTTGTGTATATACATGCAAACAGGGTA  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGTTCTCTCTAGGG-CGGTGTTTTGTGTATATACATGCAAACAGGGTA  849

seq1  TTC-TAGAGGTAGTGTGTGTGT  870
      ||| |||||||||||| |||||
seq2  TTCTTAGAGGTAGTGTTTGTGT  871