BAC Information

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BAC

Clone NameB6Ng01-068L06
Chromosome7 (Build37)
Map Location 17,404,867 - 17,540,585
singlet/doubletdoublet
Overlap geneStrn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128
Upstream geneEG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp
Downstream gene0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068L06.bB6Ng01-068L06.g
ACCDH887213DH887214
length1,008781
definitionDH887213|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L06, 5' end.DH887214|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,540,006 - 17,540,585)(17,404,867 - 17,405,647)
sequence
gaattctagcatgtgctacaaagggagaacatgcctggggcaggaggggt
gtggaatacaaatgagcatgaggctcctctgggaccagtgaggtggctca
gcgggtagaggcacttgccactaagtcttacgagtcaagttttctcccta
ggacccacgtggtggaaggagaaaatggactcataaaacctgtcctctga
tggcgtccctgtgcactaaggcacgcgtacacatttgtacaggagaacac
acacatgcaacaatggctggctgtggtgctgcatcacacgccttttatcc
cagcactcaggaggcagaagcaggtggaactctgtgaatttgaggctagc
ctggtctatatagcaagttcccaaacagccagggctacacagagagaccc
tgcctcaaaataacaacagcaacaataattttatctgttacttgaaattt
tcatacgtgcatactttgtcttttaatcttatttacccccctactacttc
ctccaactctccctggcaaccctcaactcatttccttcccaacttcatgt
cagctttttaacttactgttattaagaaccccctgagtccaatgttgcct
atgtgctcatggctatgagacacccactgggcaacctagcagcaaccaca
cccccaaaggctaatgactctcccggatccacagccacccactgccagaa
gtcctctccctacatttttttattatctattcgtgtgtgtgcactcacac
gcatggccacacctgtggaggtcagtgagtccaccatgttggtcctggaa
atgggattcacgtcatcagtgccagtggccagtgtccctgctcaatgaac
catttgcactggcccaaaaaggattatcatttttagaaaggtgtaataat
aaacatggtattggtacccatcctctccagacctctcatcttattttcag
acagcttttttctttctttcttttcttttttttagtttggttcaattttc
aattatta
gaattccatatgtagagtggtagattagactggccttaaattcctgttgg
ctcatcccccattcccaatacttctggctcccgagtgctggaattagatg
tgcccaataccccatctggcccctttttgtttttttttgagtcaggtctt
tactatgtatcctaggatggccttgaactcacaatctttgtgcctcagcc
tctggagggctagaattacagtcttgcaccattacaggagtaaccccatc
ctttgtaatgggtgtgcaccaacacatctcacaagcagtatcccttctta
cctaccttccttctacccagcactcacaccttctgaagggcaacttctgt
gagacccttcatgactgggcagtgtcagtactgaggagctggccctggct
gtttttgataagaggcccactgtgcagtcagtgcccaggacaccggtagg
gagagggctagccaagagactccagagatcagagcggagaagaggtggag
tgtgctgtgataacgagtggaaatgtgttgggatgggtggcttctgagga
gtagataatgtggctcctgcccctcagaagcttctagaccagctaaggag
attgcagagaactgtctgcactcatgcataaagtcggttgtggggctccg
ttgtgtgcttctgaaagggagccctttggggagaggtctgaaccttgatg
ttcttgaggtgtggaaaatagataaagacattaggaaaaaggactgtgta
gtcccttcttccctccacctcctatggaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17540006_17540585
seq2: B6Ng01-068L06.b_53_632 (reverse)

seq1  GGTTCTTAATAACAGTAAGTTAAAAAGCTGACATGAAGTTGGGAAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTAATAACAGTAAGTTAAAAAGCTGACATGAAGTTGGGAAGGAAA  50

seq1  TGAGTTGAGGGTTGCCAGGGAGAGTTGGAGGAAGTAGTAGGGGGGTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGAGGGTTGCCAGGGAGAGTTGGAGGAAGTAGTAGGGGGGTAAAT  100

seq1  AAGATTAAAAGACAAAGTATGCACGTATGAAAATTTCAAGTAACAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAAAGACAAAGTATGCACGTATGAAAATTTCAAGTAACAGATAA  150

seq1  AATTATTGTTGCTGTTGTTATTTTGAGGCAGGGTCTCTCTGTGTAGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTTGCTGTTGTTATTTTGAGGCAGGGTCTCTCTGTGTAGCCCT  200

seq1  GGCTGTTTGGGAACTTGCTATATAGACCAGGCTAGCCTCAAATTCACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTGGGAACTTGCTATATAGACCAGGCTAGCCTCAAATTCACAGA  250

seq1  GTTCCACCTGCTTCTGCCTCCTGAGTGCTGGGATAAAAGGCGTGTGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCTGCTTCTGCCTCCTGAGTGCTGGGATAAAAGGCGTGTGATGC  300

seq1  AGCACCACAGCCAGCCATTGTTGCATGTGTGTGTTCTCCTGTACAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACAGCCAGCCATTGTTGCATGTGTGTGTTCTCCTGTACAAATGT  350

seq1  GTACGCGTGCCTTAGTGCACAGGGACGCCATCAGAGGACAGGTTTTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCGTGCCTTAGTGCACAGGGACGCCATCAGAGGACAGGTTTTATGA  400

seq1  GTCCATTTTCTCCTTCCACCACGTGGGTCCTAGGGAGAAAACTTGACTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTTCTCCTTCCACCACGTGGGTCCTAGGGAGAAAACTTGACTCG  450

seq1  TAAGACTTAGTGGCAAGTGCCTCTACCCGCTGAGCCACCTCACTGGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTAGTGGCAAGTGCCTCTACCCGCTGAGCCACCTCACTGGTCCC  500

seq1  AGAGGAGCCTCATGCTCATTTGTATTCCACACCCCTCCTGCCCCAGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCCTCATGCTCATTTGTATTCCACACCCCTCCTGCCCCAGGCAT  550

seq1  GTTCTCCCTTTGTAGCACATGCTAGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  GTTCTCCCTTTGTAGCACATGCTAGAATTC  580

seq1: chr7_17404867_17405647
seq2: B6Ng01-068L06.g_70_850

seq1  GAATTCCATATGTAGAGTGGTAGATTAGACTGGCCTTAAATTCCTGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTAGAGTGGTAGATTAGACTGGCCTTAAATTCCTGTTGG  50

seq1  CTCATCCCCCATTCCCAATACTTCTGGCTCCCGAGTGCTGGAATTAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCCCATTCCCAATACTTCTGGCTCCCGAGTGCTGGAATTAGATG  100

seq1  TGCCCAATACCCCATCTGGCCCCTTTTTGTTTTTTTTTGAGTCAGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAATACCCCATCTGGCCCCTTTTTGTTTTTTTTTGAGTCAGGTCTT  150

seq1  TACTATGTATCCTAGGATGGCCTTGAACTCACAATCTTTGTGCCTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTATCCTAGGATGGCCTTGAACTCACAATCTTTGTGCCTCAGCC  200

seq1  TCTGGAGGGCTAGAATTACAGTCTTGCACCATTACAGGAGTAACCCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGGCTAGAATTACAGTCTTGCACCATTACAGGAGTAACCCCATC  250

seq1  CTTTGTAATGGGTGTGCACCAACACATCTCACAAGCAGTATCCCTTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAATGGGTGTGCACCAACACATCTCACAAGCAGTATCCCTTCTTA  300

seq1  CCTACCTTCCTTCTACCCAGCACTCACACCTTCTGAAGGGCAACTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTCCTTCTACCCAGCACTCACACCTTCTGAAGGGCAACTTCTGT  350

seq1  GAGACCCTTCATGACTGGGCAGTGTCAGTACTGAGGAGCTGGCCCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTTCATGACTGGGCAGTGTCAGTACTGAGGAGCTGGCCCTGGCT  400

seq1  GTTTTTGATAAGAGGCCCACTGTGCAGTCAGTGCCCAGGACACCGGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGATAAGAGGCCCACTGTGCAGTCAGTGCCCAGGACACCGGTAGG  450

seq1  GAGAGGGCTAGCCAAGAGACTCCAGAGATCAGAGCGGAGAAGAGGTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCTAGCCAAGAGACTCCAGAGATCAGAGCGGAGAAGAGGTGGAG  500

seq1  TGTGCTGTGATAACGAGTGGAAATGTGTTGGGATGGGTGGCTTCTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGATAACGAGTGGAAATGTGTTGGGATGGGTGGCTTCTGAGGA  550

seq1  GTAGATAATGTGGCTCCTGCCCCTCAGAAGCTTCTAGACCAGCTAAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAATGTGGCTCCTGCCCCTCAGAAGCTTCTAGACCAGCTAAGGAG  600

seq1  ATTGCAGAGAACTGTCTGCACTCATGCATAAAGTCGGTTGTGGGGCTCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGAGAACTGTCTGCACTCATGCATAAAGTCGGTTGTGGGGCTCCG  650

seq1  TTGTGTGCTTCTGAGAAGGGAGCCC-TTGGGGAGAGGTCTGAACC-TGAT  698
      |||||||||||||| |||||||||| ||||||||||||||||||| ||||
seq2  TTGTGTGCTTCTGA-AAGGGAGCCCTTTGGGGAGAGGTCTGAACCTTGAT  699

seq1  GTTCTTGAGGTGTGGAAAATAGAT-AAGACATTAAGGAAAAAGGACTGTG  747
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GTTCTTGAGGTGTGGAAAATAGATAAAGACATT-AGGAAAAAGGACTGTG  748

seq1  TAGTCCCTTCGTTCCCTCCACCTCCTATGGAAGC  781
      |||||||||| |||||||||||||||||||||||
seq2  TAGTCCCTTC-TTCCCTCCACCTCCTATGGAAGC  781